Translational control by 5′-untranslated regions of eukaryotic mRNAs
Open accessAbstract
The eukaryotic 5′ untranslated region (UTR) is critical for ribosome recruitment to the messenger RNA (mRNA) and start codon choice and plays a major role in the control of translation efficiency and shaping the cellular proteome. The ribosomal initiation complex is assembled on the mRNA via a cap-dependent or cap-independent mechanism. We describe various mechanisms controlling ribosome scanning and initiation codon selection by 5′ upstream open reading frames, translation initiation factors, and primary and secondary structures of the 5′UTR, including particular sequence motifs. We also discuss translational control via phosphorylation of eukaryotic initiation factor 2, which is implicated in learning and memory, neurodegenerative diseases, and cancer.
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The translation initiation efficiency of mRNA is affected by the sequence and structure of the 5′ UTR region.
“The translation initiation efficiency of mRNA is affected by the sequence and structure of the 5′ UTR region.5”
From Evaluation of synthetic mRNA with selected UTR sequences and alternative poly(A) tail, in vitro and in vivo (2025) · cites this paper as [5]
The paper's data captured and quantitated the repressive effect of secondary structure on ribosome load.
“By calculating UTR minimum free energies (MFE)26 and comparing them to UTR MRLs, we captured and quantitated this repressive effect of secondary structure on ribosome load (Supplementary Fig. 2c)17,25.”
From Human 5′ UTR design and variant effect prediction from a massively parallel translation assay (2019) · cites this paper as [17]
Translation initiation is largely dependent on start codons and their context and position relative to a CDS.
“Translation initiation is largely dependent on start codons and their context and position relative to a CDS12,17.”
From Human 5′ UTR design and variant effect prediction from a massively parallel translation assay (2019) · cites this paper as [17]
Translation initiation and elongation is affected by RNA secondary structure that forms within 5′ UTRs and coding sequences, with strong structures showing the most negative effect on translation.
“Translation initiation and elongation is also affected by RNA secondary structure that forms within 5′ UTRs and coding sequences, with strong structures showing the most negative effect on translation17,25.”
From Human 5′ UTR design and variant effect prediction from a massively parallel translation assay (2019) · cites this paper as [17]
The 5′ UTR plays a key role in translation initiation and pre-initiation complex assembly.
“In this context, the 5′ UTR is of particular interest, as it plays a key role in translation initiation and pre-initiation complex assembly [17].”
From Identification of novel 5’ UTR variants for enhanced mRNA translation and vaccine immunogenicity (2026) · cites this paper as [17]
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Translation inhibitors cause abnormalities in ribosome profiling experiments
Gerashchenko, M. V., & Gladyshev, V. N. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku671 · Cited by 262 · see citing works
Rubio, C. A., Weisburd, B., Holderfield, M., Arias, C., Fang, E., DeRisi, J. L., & Fanidi, A. (2014) · Genome Biology · doi:10.1186/s13059-014-0476-1 · Cited by 200 · see citing works
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- Authors
- Hinnebusch, A. G., Ivanov, I. P., & Sonenberg, N.
- Affiliations
- National Institutes of Health (US)
- McGill University (CA)
- Corresponding author
- Sonenberg, Nahum
- Venue
- Science
- Published
- 2016-06-17
- Volume
- 352
- Issue
- 6292
- Pages
- 1413-1416
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC7422601
- OpenAlex
- W2427010553
- Cited by
- 1,079
- References
- 2
- Citations by year
- 2026: 98 · 2025: 118 · 2024: 120 · 2023: 98 · 2022: 118 · 2021: 97 · 2020: 116 · 2019: 111 · 2018: 96 · 2017: 88 · 2016: 19
- FWCI
- 9.51
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- eScholarship@McGill (McGill) (publishedVersion)
- PubMed Central (acceptedVersion)
- eScholarship@McGill (McGill) (submittedVersion)
- Funders
- National Institutes of Health
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (Z01HD001004)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
- Keywords
- 5' untranslated region, translational regulation, translation initiation, ribosome scanning, start codon selection, upstream open reading frames, translation initiation factors, eIF2α phosphorylation, cap-dependent translation, cap-independent translation, mRNA secondary structure
- MeSH terms
- Animals, Humans, Memory, Neoplasms, Peptide Chain Initiation, Translational, Ribosomes, Eukaryotic Initiation Factor-2, Open Reading Frames, Codon, Initiator, Neurodegenerative Diseases, 5' Untranslated Regions, Regulatory Elements, Transcriptional
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