Dense connectomic reconstruction in layer 4 of the somatosensory cortex

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Volume electron microscopy

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Functional connectomics spanning multiple areas of mouse visual cortex

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Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission

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Spine dynamics in the brain, mental disorders and artificial neural networks

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Neurite Exchange Imaging (NEXI): a minimal model of diffusion in gray matter with inter‐compartment water exchange

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Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set

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Neuronal circuits in barrel cortex for whisker sensory perception

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Challenges for biophysical modeling of microstructure

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neuPrint: an open access tool for EM connectomics

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Oligodendrocyte precursor cells ingest axons in the mouse neocortex

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Neuropathic pain caused by miswiring and abnormal end organ targeting

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Whole-body integration of gene expression and single-cell morphology

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Vision-dependent specification of cell types and function in the developing cortex

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Binary and analog variation of synapses between cortical pyramidal neurons

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Diffusion time dependence, power‐law scaling, and exchange in gray matter

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A multi-scale brain map derived from whole-brain volumetric reconstructions

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Integrating cellular electron microscopy with multimodal data to explore biology across space and time

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MitoEM Dataset: Large-Scale 3D Mitochondria Instance Segmentation from EM Images

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Cell-type specific innervation of cortical pyramidal cells at their apical dendrites

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Postnatal connectomic development of inhibition in mouse barrel cortex

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Structure and function of axo-axonic inhibition

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Bio‐Inspired 3D Artificial Neuromorphic Circuits

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Light-microscopy-based connectomic reconstruction of mammalian brain tissue

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Synaptic wiring motifs in posterior parietal cortex support decision-making

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The fractal brain: scale-invariance in structure and dynamics

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CAVE: Connectome Annotation Versioning Engine

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The impact of neuron morphology on cortical network architecture

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Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning

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Inhibitory specificity from a connectomic census of mouse visual cortex

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Local shape descriptors for neuron segmentation

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Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortexPreprint

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Emerging memristive neurons for neuromorphic computing and sensing

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Ultrastructural Imaging of Activity-Dependent Synaptic Membrane-Trafficking Events in Cultured Brain Slices

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neu Print: Analysis Tools for EM Connectomics

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Ultrastructural analysis of dendritic spine necks reveals a continuum of spine morphologies

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Binary and analog variation of synapses between cortical pyramidal neurons

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3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries

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Light microscopy based approach for mapping connectivity with molecular specificity

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Petascale neural circuit reconstruction: automated methods

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Synaptic architecture of a memory engram in the mouse hippocampus

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A set of hub neurons and non-local connectivity features support global brain dynamics in C. elegans

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BrainPy, a flexible, integrative, efficient, and extensible framework for general-purpose brain dynamics programming

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A single-cell transcriptomic atlas of complete insect nervous systems across multiple life stages

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Diffusion-based deep learning method for augmenting ultrastructural imaging and volume electron microscopy

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Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron microtomography and volume electron microscopy

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The present and the future of microstructure MRI: From a paradigm shift to normal science

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Dense 4D nanoscale reconstruction of living brain tissue

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A multimodal computational pipeline for 3D histology of the human brain

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Photoacoustic Neuroimaging - Perspectives on a Maturing Imaging Technique and its Applications in Neuroscience

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Primate Neuronal Connections are Sparse as Compared to Mouse

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Artificial Intelligence-Human Hybrid Workflow Enhances Teleophthalmology for the Detection of Diabetic Retinopathy

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How innovations in methodology offer new prospects for volume electron microscopy

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Brain wiring determinants uncovered by integrating connectomes and transcriptomes

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Bio-instantiated recurrent neural networks: Integrating neurobiology-based network topology in artificial networks

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Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques

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CAVE: Connectome Annotation Versioning Engine

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Looking at neurodevelopment through a big data lens

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Connectomics of the Octopus vulgaris vertical lobe provides insight into conserved and novel principles of a memory acquisition network

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Chandelier cell anatomy and function reveal a variably distributed but common signalPreprint

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Multiscale and multimodal reconstruction of cortical structure and functionPreprint

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Layer-specific anatomical and physiological features of the retina’s neurovascular unit

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Dense Circuit Reconstruction to Understand Neuronal Computation: Focus on Zebrafish

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Multi-scale light microscopy/electron microscopy neuronal imaging from brain to synapse with a tissue clearing method, ScaleSF

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Partial connectomes of labeled dopaminergic circuits reveal non-synaptic communication and axonal remodeling after exposure to cocaine

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Multi-layered maps of neuropil with segmentation-guided contrastive learning

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Tinnitus handicap inventory.

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High-contrast en bloc staining of mouse whole-brain and human brain samples for EM-based connectomics

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Homophilic wiring principles underpin neuronal network topology in vitro

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Connectomic reconstruction of a cortical columnPreprint

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RoboEM: automated 3D flight tracing for synaptic-resolution connectomics

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An anatomical substrate of credit assignment in reinforcement learningPreprint

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Connectome-constrained deep mechanistic networks predict neural responses across the fly visual system at single-neuron resolution

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The future of cerebral organoids in drug discovery

Salick, M. R., Lubeck, E., Riesselman, A., & Kaykas, A. (2021) · Seminars in Cell & Developmental Biology · doi:10.1016/j.semcdb.2020.05.024 · Cited by 29

Coordination-driven structure reconstruction in polymer of intrinsic microporosity membranes for efficient propylene/propane separation

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An interactive deep learning-based approach reveals mitochondrial cristae topologies

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Oligodendrocyte precursor cells prune axons in the mouse neocortexPreprint

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New light on cortical neuropeptides and synaptic network plasticity

Smith, S. J., Hawrylycz, M., Rossier, J., & Sümbül, U. (2020) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2020.04.002 · Cited by 26

An ultrastructural connectomic analysis of a higher‐order thalamocortical circuit in the mouse

Sampathkumar, V., Miller-Hansen, A. J., Sherman, S. M., & Kasthuri, N. (2020) · European Journal of Neuroscience · doi:10.1111/ejn.15092 · Cited by 7

Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation

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Bringing Anatomical Information into Neuronal Network Models

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Advanced Deep Networks for 3d Mitochondria Instance Segmentation

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Three-dimensional SEM, TEM, and STEM for analysis of large-scale biological systems

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Connectomic analysis of thalamus-driven disinhibition in cortical layer 4

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Predicting modular functions and neural coding of behavior from a synaptic wiring diagram

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Neuronal diversity and stereotypy at multiple scales through whole brain morphometry

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High-throughput segmentation of unmyelinated axons by deep learning

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Partial connectomes of labeled dopaminergic circuits reveal non-synaptic communication and axonal remodeling after exposure to cocaine

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Upscaling X-ray nanoimaging to macroscopic specimens

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Perisomatic ultrastructure efficiently classifies cells in mouse cortex

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Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics

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Nanoscale 3D EM Reconstructions Reveal Intrinsic Mechanisms of Structural Diversity of Chemical Synapses

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Connectomic reconstruction of a cortical columnPreprint

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Connectomics: The dense reconstruction of neuronal circuits

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Brain anatomy revealed in startling detail

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Dissecting origins of wiring specificity in dense reconstructions of neural tissuePreprint

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Sparse reconstruction of brain circuits: Or, how to survive without a microscopic connectome

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