Local connectivity and synaptic dynamics in mouse and human neocortex
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Abstract
We present a unique, extensive, and open synaptic physiology analysis platform and dataset. Through its application, we reveal principles that relate cell type to synaptic properties and intralaminar circuit organization in the mouse and human cortex. The dynamics of excitatory synapses align with the postsynaptic cell subclass, whereas inhibitory synapse dynamics partly align with presynaptic cell subclass but with considerable overlap. Synaptic properties are heterogeneous in most subclass-to-subclass connections. The two main axes of heterogeneity are strength and variability. Cell subclasses divide along the variability axis, whereas the strength axis accounts for substantial heterogeneity within the subclass. In the human cortex, excitatory-to-excitatory synaptic dynamics are distinct from those in the mouse cortex and vary with depth across layers 2 and 3.
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From a circuit perspective, Sst interneurons are uniquely positioned to exert control over both excitation and inhibition in the cortex as they target excitatory and all other subclasses of inhibitory cortical neurons, but not themselves.
“From a circuit perspective, Sst interneurons are uniquely positioned to exert control over both excitation and inhibition in the cortex as they target excitatory and all other subclasses of inhibitory cortical neurons, but not themselves91.”
From Integrated multimodal cell atlas of Alzheimer’s disease (2024) · cites this paper as [91]
The Discussion section on conserved mouse intralaminar circuitry describes Sst cells as broadly inhibiting nearby cells, which supports the claim's broad targeting premise. But the Results section on intralaminar connectivity explicitly reports connections between Sst neurons in every layer and confirms connections between transcriptionally identified Sst cells. Thus, the claim that they do not target themselves is contrary to the paper's findings. (LLM, conf=0.89)
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Cites
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- Authors
- Campagnola, L., Seeman, S. C., Chartrand, T., Kim, L., Hoggarth, A., Gamlin, C., Ito, S., Trinh, J., Davoudian, P., Radaelli, C., Kim, M.-H., Hage, T., Braun, T., Alfiler, L., Andrade, J., Bohn, P., Dalley, R., Henry, A., Kebede, S., Mukora, A., Sandman, D., Williams, G., Larsen, R., Teeter, C., Daigle, T. L., Berry, K., Dotson, N., Enstrom, R., Gorham, M., Hupp, M., Dingman Lee, S., Ngo, K., Nicovich, P. R., Potekhina, L., Ransford, S., Gary, A., Goldy, J., McMillen, D., Pham, T., Tieu, M., Siverts, L., Walker, M., Farrell, C., Schroedter, M., Slaughterbeck, C., Cobb, C., Ellenbogen, R., Gwinn, R. P., Keene, C. D., Ko, A. L., Ojemann, J. G., Silbergeld, D. L., Carey, D., Casper, T., Crichton, K., Clark, M., Dee, N., Ellingwood, L., Gloe, J., Kroll, M., Sulc, J., Tung, H., Wadhwani, K., Brouner, K., Egdorf, T., Maxwell, M., McGraw, M., Pom, C. A., Ruiz, A., Bomben, J., Feng, D., Hejazinia, N., Shi, S., Szafer, A., Wakeman, W., Phillips, J., Bernard, A., Esposito, L., D’Orazi, F. D., Sunkin, S., Smith, K., Tasic, B., Arkhipov, A., Sorensen, S., Lein, E., Koch, C., Murphy, G., Zeng, H., & Jarsky, T.
- Affiliations
- Allen Institute for Brain Science (US)
- Byte Physics, Berlin, Germany.
- Allen Institute for Brain Science, Seattle, WA, USA.
- Swedish Medical Center (US)
- University of Washington (US)
- Corresponding author
- Campagnola, Luke
- Seeman, Stephanie C.
- Jarsky, Tim
- ORCID
- Campagnola, Luke
- Seeman, Stephanie C.
- Chartrand, Thomas
- Kim, Lisa
- Hoggarth, Alex
- Gamlin, Clare
- Ito, Shinya
- Trinh, Jessica
- Davoudian, Pasha
- Radaelli, Cristina
- Kim, Mean-Hwan
- Hage, Travis
- Braun, Thomas
- Alfiler, Lauren
- Bohn, Phillip
- Dalley, Rachel
- Henry, Alex
- Kebede, Sara
- Mukora, Alice
- Sandman, David
- Williams, Grace
- Larsen, Rachael
- Teeter, Corinne
- Daigle, Tanya L.
- Berry, Kyla
- Dotson, Nadia
- Enstrom, Rachel
- Gorham, Melissa
- Hupp, Madie
- Nicovich, Philip R.
- Potekhina, Lydia
- Ransford, Shea
- Gary, Amanda
- Goldy, Jeff
- McMillen, Delissa
- Pham, Trangthanh
- Tieu, Michael
- Siverts, La’Akea
- Walker, Miranda
- Farrell, Colin
- Schroedter, Martin
- Slaughterbeck, Cliff
- Cobb, Charles
- Ellenbogen, Richard
- Gwinn, Ryder P.
- Keene, C. Dirk
- Ko, Andrew L.
- Ojemann, Jeffrey G.
- Silbergeld, Daniel L.
- Carey, Daniel
- Casper, Tamara
- Crichton, Kirsten
- Clark, Michael
- Dee, Nick
- Ellingwood, Lauren
- Gloe, Jessica
- Kroll, Matthew
- Sulc, Josef
- Tung, Herman
- Wadhwani, Katherine
- Brouner, Krissy
- Egdorf, Tom
- Maxwell, Michelle
- McGraw, Medea
- Pom, Christina Alice
- Ruiz, Augustin
- Bomben, Jasmine
- Feng, David
- Hejazinia, Nika
- Szafer, Aaron
- Wakeman, Wayne
- Phillips, John
- Bernard, Amy
- Esposito, Luke
- D’Orazi, Florence D.
- Sunkin, Susan
- Smith, Kimberly
- Tasic, Bosiljka
- Arkhipov, Anton
- Sorensen, Staci
- Lein, Ed
- Koch, Christof
- Murphy, Gabe
- Zeng, Hongkui
- Jarsky, Tim
- Venue
- Science
- Published
- 2022-03-11
- Volume
- 375
- Issue
- 6585
- Pages
- eabj5861-eabj5861
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC9970277
- OpenAlex
- W4220896689
- Cited by
- 363
- References
- 23
- Citations by year
- 2026: 68 · 2025: 93 · 2024: 99 · 2023: 67 · 2022: 33 · 2021: 1 · 2020: 2
- FWCI
- 32.28
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (1rf1mh121274-01, 5u01mh114812-03)
- National Institute on Aging (P30AG066509)
- National Institute of Mental Health (RF1 MH121274, U01MH105982, U01MH114812, U19MH114830)
- National Institute on Drug Abuse (R01DA036909)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Neuroscience › Cognitive Neuroscience › Neural dynamics and brain function
- Life Sciences › Neuroscience › Cognitive Neuroscience › Memory and Neural Mechanisms
- Keywords
- synaptic dynamics, neocortex, local connectivity, excitatory synapses, inhibitory synapses, synaptic heterogeneity, synaptic efficacy, synaptic variability, human cortex, mouse cortex, cortical depth
- MeSH terms
- Adult, Animals, Female, Humans, Male, Mice, Transgenic, Models, Neurological, Neural Pathways, Synaptic Transmission, Neurons, Synapses, Temporal Lobe, Visual Cortex, Neocortex, Excitatory Postsynaptic Potentials, Mice, Inhibitory Postsynaptic Potentials, Datasets as Topic
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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