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Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria
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Abstract
Host and parasite RNA sequencing is combined with parasite load estimates to reveal mechanisms associated with human severe malaria.
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“Moreover, RNA-seq analyses of the human host can be used to identify novel or underappreciated host–microbial interactions directly from clinical samples, as previously shown for patients with Lyme disease68, dengue80 or malaria81.”
From Clinical metagenomics (2019) · cites this paper as [81]
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Cites
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
Benjamini, Y., & Hochberg, Y. (1995) · Journal of the Royal Statistical Society Series B: Statistical Methodology · doi:10.1111/j.2517-6161.1995.tb02031.x · Cited by 109,482
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
Robinson, M. D., McCarthy, D. J., & Smyth, G. K. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp616 · Cited by 41,364
WGCNA: an R package for weighted correlation network analysis
Langfelder, P., & Horvath, S. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-559 · Cited by 27,252
HTSeq—a Python framework to work with high-throughput sequencing data
Anders, S., Pyl, P. T., & Huber, W. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btu638 · Cited by 21,464
Adjusting batch effects in microarray expression data using empirical Bayes methods
Johnson, W. E., Li, C., & Rabinovic, A. (2007) · Biostatistics · doi:10.1093/biostatistics/kxj037 · Cited by 8,658
REVIGO summarizes and visualizes long lists of gene ontology terms
Supek, F., Bošnjak, M., Škunca, N., & Šmuc, T. (2011) · PLoS ONE · doi:10.1371/journal.pone.0021800 · Cited by 6,264
GENCODE: The reference human genome annotation for The ENCODE Project
Harrow, J., Frankish, A., Gonzalez, J. M., Tapanari, E., Diekhans, M., Kokocinski, F., Aken, B. L., Barrell, D., Zadissa, A., Searle, S., et al. (2012) · Genome Research · doi:10.1101/gr.135350.111 · Cited by 4,585
The immunopathology of sepsis and potential therapeutic targets
van der Poll, T., van de Veerdonk, F. L., Scicluna, B. P., & Netea, M. G. (2017) · Nature Reviews Immunology · doi:10.1038/nri.2017.36 · Cited by 1,957
Neutrophil Function: From Mechanisms to Disease
Amulic, B., Cazalet, C., Hayes, G. L., Metzler, K. D., & Zychlinsky, A. (2012) · Annual Review of Immunology · doi:10.1146/annurev-immunol-020711-074942 · Cited by 1,782
Immunometabolism governs dendritic cell and macrophage function
O'Neill, L. A. J., & Pearce, E. J. (2015) · The Journal of Experimental Medicine · doi:10.1084/jem.20151570 · Cited by 1,779
An emerging role for neutrophil extracellular traps in noninfectious disease
Jorch, S. K., & Kubes, P. (2017) · Nature Medicine · doi:10.1038/nm.4294 · Cited by 1,244
PlasmoDB: a functional genomic database for malaria parasites
Aurrecoechea, C., Brestelli, J. E., Brunk, B. P., Dommer, J., Fischer, S., Gajria, B., Gao, X., Gingle, A. R., Grant, G. R., Harb, O. S., et al. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn814 · Cited by 1,221
Indicators of Life-Threatening Malaria in African Children
Marsh, K., Forster, D., Waruiru, C., Mwangi, I., Winstanley, M., Marsh, V., Newton, C. R. J. C., Winstanley, P., Warn, P. A., Peshu, N. M., et al. (1995) · New England Journal of Medicine · doi:10.1056/nejm199505253322102 · Cited by 1,093
Ranson, H., & Lissenden, N. (2016) · Trends in Parasitology · doi:10.1016/j.pt.2015.11.010 · Cited by 989
RNA-SeQC: RNA-seq metrics for quality control and process optimization
DeLuca, D. S., Levin, J. Z., Sivachenko, A., Fennell, T., Nazaire, M.-D., Williams, C., Reich, M., Winckler, W., & Getz, G. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts196 · Cited by 899
Dual RNA-seq of pathogen and host
Westermann, A. J., Gorski, S. A., & Vogel, J. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2852 · Cited by 782
Phillips, M. A., Burrows, J. N., Manyando, C., van Huijsduijnen, R. H., Voorhis, W. C. V., & Wells, T. N. C. (2017) · Nature Reviews Disease Primers · doi:10.1038/nrdp.2017.50 · Cited by 648
Antimalarial drug resistance: linking Plasmodium falciparum parasite biology to the clinic
Blasco, B., Leroy, D., & Fidock, D. A. (2017) · Nature Medicine · doi:10.1038/nm.4381 · Cited by 585
Maier, A. G., Rug, M., O’Neill, M. T., Brown, M. A., Chakravorty, S. J., Szestak, T., Chesson, J. M., Wu, Y., Hughes, K. R., Coppel, R. L., et al. (2008) · Cell · doi:10.1016/j.cell.2008.04.051 · Cited by 523
The UCSC Genome Browser database: 2018 update
Casper, J., Zweig, A. S., Villarreal, C., Tyner, C., Speir, M. L., Rosenbloom, K. R., Raney, B. J., Lee, C. M., Lee, B. T., Karolchik, D., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1020 · Cited by 475
Estimation of the Total Parasite Biomass in Acute Falciparum Malaria from Plasma PfHRP2
Dondorp, A. M., Desakorn, V., Ngum, W. P., Sahassananda, D., Silamut, K., Chotivanich, K., Newton, P. N., Pitisuttithum, P., Smithyman, A. M., White, N. J., et al. (2005) · PLoS Medicine · doi:10.1371/journal.pmed.0020204 · Cited by 450
A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium
Sinha, A., Hughes, K. R., Modrzynska, K., Otto, T. D., Pfander, C., Dickens, N. J., Religa, A. A., Bushell, E., Graham, A., Cameron, R., et al. (2014) · Nature · doi:10.1038/nature12970 · Cited by 435
Self-citationHistones induce rapid and profound thrombocytopenia in mice
Fuchs, T. A., Bhandari, A. A., & Wagner, D. D. (2011) · Blood · doi:10.1182/blood-2011-01-332676 · Cited by 429
Granulopoiesis and granules of human neutrophils
Cowland, J. B., & Borregaard, N. (2016) · Immunological Reviews · doi:10.1111/imr.12440 · Cited by 405
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
Otto, T. D., Wilinski, D., Assefa, S. A., Keane, T., Sarry, L. R., Böhme, U., Lemieux, J. E., Barrell, B. G., Pain, A., Berriman, M., et al. (2010) · Molecular Microbiology · doi:10.1111/j.1365-2958.2009.07026.x · Cited by 394
Self-citationAbbas, A. R., Baldwin, D. T., Ma, Y., Ouyang, W., Gurney, A. L., Martin, F., Fong, S. S., Campagne, M. V. L., Godowski, P. J., Williams, P. M., et al. (2005) · Genes and Immunity · doi:10.1038/sj.gene.6364173 · Cited by 377
López-Barragán, M. J., Lemieux, J., Quiñones, M., Williamson, K., Molina-Cruz, A., Cui, K.-R., Barillas-Mury, C., Zhao, K.-J., & Su, X.-Z. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-587 · Cited by 373
Weighted gene coexpression network analysis strategies applied to mouse weight
Fuller, T. F., Ghazalpour, A., Aten, J. E., Drake, T. A., Lusis, A. J., & Horvath, S. (2007) · Mammalian Genome · doi:10.1007/s00335-007-9043-3 · Cited by 372
Innate sensing of malaria parasites
Gazzinelli, R. T., Kalantari, P., Fitzgerald, K. A., & Golenbock, D. T. (2014) · Nature reviews. Immunology · doi:10.1038/nri3742 · Cited by 372
Glenister, F. K., Coppel, R. L., Cowman, A. F., Mohandas, N., & Cooke, B. M. (2002) · Blood · doi:10.1182/blood.v99.3.1060 · Cited by 329
The Role of Animal Models for Research on Severe Malaria
Craig, A. G., Grau, G. E., Janse, C. J., Kazura, J. W., Milner, D. A., Barnwell, J. W., Turner, G. D. H., & Langhorne, J. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002401 · Cited by 321
Churcher, T. S., Lissenden, N., Griffin, J. T., Worrall, E., & Ranson, H. (2016) · eLife · doi:10.7554/elife.16090 · Cited by 312
Resolving host–pathogen interactions by dual RNA-seq
Westermann, A. J., Barquist, L., & Vogel, J. (2017) · PLoS Pathogens · doi:10.1371/journal.ppat.1006033 · Cited by 301
Computational deconvolution: extracting cell type-specific information from heterogeneous samples
Shen-Orr, S. S., & Gaujoux, R. (2013) · Current Opinion in Immunology · doi:10.1016/j.coi.2013.09.015 · Cited by 287
Distinct physiological states of Plasmodium falciparum in malaria-infected patients
Daily, J. P., Scanfeld, D., Pochet, N. L. M. M., Roch, K. G. L., Plouffe, D., Kamal, M., Sarr, O., Mboup, S., Ndir, O., Wypij, D., et al. (2007) · Nature · doi:10.1038/nature06311 · Cited by 274
Cytokines and Chemokines in Cerebral Malaria Pathogenesis
Dunst, J., Kamena, F., & Matuschewski, K. (2017) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2017.00324 · Cited by 264
Innate Immune Recognition of an AT-Rich Stem-Loop DNA Motif in the Plasmodium falciparum Genome
Sharma, S., DeOliveira, R. B., Kalantari, P., Parroche, P., Goutagny, N., Jiang, Z., Chan, J., Bartholomeu, D. C., Lauw, F. N., Hall, J. P., et al. (2011) · Immunity · doi:10.1016/j.immuni.2011.05.016 · Cited by 258
Protective and Harmful Immunity to RSV Infection
Openshaw, P., Chiu, C., Culley, F. J., & Johansson, C. (2017) · Annual Review of Immunology · doi:10.1146/annurev-immunol-051116-052206 · Cited by 252
Variant surface antigens of Plasmodium falciparum and their roles in severe malaria
Wahlgren, M., Goel, S., & Akhouri, R. R. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.47 · Cited by 237
Malaria: mechanisms of erythrocytic infection and pathological correlates of severe disease.
Haldar, K., Murphy, S., Milner, D., & Taylor, T. (2007) · Annual Review of Pathology · doi:10.1146/annurev.pathol.2.010506.091913 · Cited by 232
Walther, M. R., Jeffries, D. J., Finney, O. C., Njie, M., Ebonyi, A. O., Deininger, S., Lawrence, E., Ngwa-Amambua, A., Jayasooriya, S., Cheeseman, I. H., et al. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000364 · Cited by 223
Self-citationSexual development in Plasmodium parasites: knowing when it's time to commit
Josling, G., & Llinás, M. (2015) · Nature Reviews Microbiology · doi:10.1038/nrmicro3519 · Cited by 223
Modrzynska, K., Pfander, C., Chappell, L., Yu, L., Suárez, C., Dundas, K., Gomes, A. R., Goulding, D., Rayner, J. C., Choudhary, J. S., et al. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2016.12.003 · Cited by 218
The Cellular and Molecular Basis of Translational Immunometabolism
Norata, G. D., Caligiuri, G., Chavakis, T., Matarese, G., Netea, M. G., Nicoletti, A., O'Neill, L. A. J., & Marelli‐Berg, F. M. (2015) · Immunity · doi:10.1016/j.immuni.2015.08.023 · Cited by 197
Schubert‐Unkmeir, A., Konrad, C., Slanina, H., Czapek, F., Hebling, S., & Frosch, M. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1000874 · Cited by 197
OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data
Hu, Y., Yan, C., Hsu, C.-H., Chen, Q., Niu, K., Komatsoulis, G. A., & Meerzaman, D. M. (2014) · Cancer Informatics · doi:10.4137/cin.s13495 · Cited by 195
Baker, V. S., Imade, G., Molta, N. B., Tawde, P., Pam, S. D., Obadofin, M. O., Sagay, S. A., Egah, D. Z., Iya, D., Afolabi, B. B., et al. (2008) · Malaria Journal · doi:10.1186/1475-2875-7-41 · Cited by 186
Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis
Wong, W., Bai, X., Sleebs, B. E., Triglia, T., Brown, A., Thompson, J. K., Jackson, K. E., Hanssen, E. G., Marapana, D. S., Fernández, I. S., et al. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2017.31 · Cited by 182
Plasmodium species: master renovators of their host cells
de Koning‐Ward, T. F., Dixon, M. W. A., Tilley, L. M., & Gilson, P. R. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.79 · Cited by 174
Nutrient sensing modulates malaria parasite virulence
Mancio-Silva, L., Slavic, K., Grilo Ruivo, M. T., Grosso, A. R., Modrzynska, K. K., Vera, I. M., Sales-Dias, J., Gomes, A. R., MacPherson, C. R., Crozet, P., et al. (2017) · Nature · doi:10.1038/nature23009 · Cited by 169
Hendriksen, I. C. E., Mwanga‐Amumpaire, J., von Seidlein, L., Mtove, G. A., White, L. J., Olaosebikan, R., Lee, S. J., Tshefu, A. K., Woodrow, C. J., Amos, B., et al. (2012) · PLoS Medicine · doi:10.1371/journal.pmed.1001297 · Cited by 145
Severe malaria: what’s new on the pathogenesis front?
Wassmer, S. C., & Grau, G. E. (2016) · International Journal for Parasitology · doi:10.1016/j.ijpara.2016.08.002 · Cited by 142
Sasai, M., Oshiumi, H., Matsumoto, M., Inoue, N., Fujita, F., Nakanishi, M., & Seya, T. (2005) · The Journal of Immunology · doi:10.4049/jimmunol.174.1.27 · Cited by 135
Immunobiology of Ebola and Lassa virus infections
Prescott, J. B., Marzi, A., Safronetz, D., Robertson, S. J., Feldmann, H., & Best, S. M. (2017) · Nature reviews. Immunology · doi:10.1038/nri.2016.138 · Cited by 135
Genomewide Analysis of the Host Response to Malaria in Kenyan Children
Griffiths, M., Shafi, M. J., Popper, S. J., Hemingway, C. A., Kortok, M., Wathen, A., Rockett, K. A., Mott, R., Levin, M., Newton, C. R. J. C., et al. (2005) · The Journal of Infectious Diseases · doi:10.1086/429297 · Cited by 130
Self-citationVandenbroucke, R. E., Dejonckheere, E., Lint, P. V., Demeestere, D., Wonterghem, E. V., Vanlaere, I., Puimège, L., Hauwermeiren, F. V., Rycke, R. M. D., Guire, C. M., et al. (2012) · Journal of Neuroscience · doi:10.1523/jneurosci.0967-12.2012 · Cited by 121
Chikina, M. D., Zaslavsky, E., & Sealfon, S. C. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv015 · Cited by 118
Type I IFN signaling in CD8– DCs impairs Th1-dependent malaria immunity
Haque, A., Best, S. E., de, M. M., James, K. R., Ammerdorffer, A., Edwards, C. L., Rivera, F. D. L., Amante, F. H., Bunn, P. T., Sheel, M., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci70698 · Cited by 111
Evidence for additive and interaction effects of host genotype and infection in malaria
Idaghdour, Y., Quinlan, J., Goulet, J.-P., Berghout, J., Gbeha, E., Bruat, V., de Malliard, T., Grenier, J., Gomez, S., Gros, P., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1204945109 · Cited by 107
Porcherie, A., Mathieu, C., Péronet, R., Schneider, E., Claver, J., Commère, P., Kiefer‐Biasizzo, H., Karasuyama, H., Milon, G., Dy, M., et al. (2011) · The Journal of Experimental Medicine · doi:10.1084/jem.20110845 · Cited by 107
Haque, A., Best, S. E., Ammerdorffer, A., Desbarrieres, L., de, M. M., Amante, F. H., Rivera, F. D. L., Hertzog, P. J., Boyle, G. M., Hill, G. R., et al. (2011) · European Journal of Immunology · doi:10.1002/eji.201141539 · Cited by 107
Feintuch, C. M., Saidi, A., Seydel, K. B., Chen, G., Goldman-Yassen, A. E., Mita-Mendoza, N. K., Kim, R. S., Frenette, P. S., Taylor, T. E., & Daily, J. P. (2016) · mBio · doi:10.1128/mbio.01300-15 · Cited by 103
Pathogenic CD8+ T cells in experimental cerebral malaria
Howland, S. W., Claser, C., Poh, C. M., Gun, S. Y., & Rénia, L. (2015) · Seminars in Immunopathology · doi:10.1007/s00281-015-0476-6 · Cited by 99
Walther, M., De Caul, A., Aka, P., Njie, M., Amambua-Ngwa, A., Walther, B., Predazzi, I. M., Cunnington, A., Deininger, S., Takem, E. N., et al. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002579 · Cited by 98
Self-citationLemieux, J. E., Gomez‐Escobar, N., Feller, A., Carret, C., Amambua‐Ngwa, A., Pinches, R. A., Day, F. R., Kyes, S., Conway, D. J., Holmes, C. C., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0811829106 · Cited by 97
Self-citationHendriksen, I. C. E., White, L. J., Veenemans, J., Mtove, G., Woodrow, C., Amos, B., Saiwaew, S., Gesase, S., Nadjm, B., Silamut, K., et al. (2013) · The Journal of Infectious Diseases · doi:10.1093/infdis/jis675 · Cited by 93
Comparative Transcriptional and Genomic Analysis of Plasmodium falciparum Field Isolates
Mackinnon, M. J., Li, J., Mok, S., Kortok, M., Marsh, K., Preiser, P. R., & Bozdech, Z. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000644 · Cited by 90
Transcriptional profiling defines dynamics of parasite tissue sequestration during malaria infection
Pellé, K. G., Oh, K., Buchholz, K., Narasimhan, V. M., Cordy, R. J., Milner, D. A., Brancucci, N. M. B., Ma, S., Voss, T. S., Ketman, K., et al. (2015) · Genome Medicine · doi:10.1186/s13073-015-0133-7 · Cited by 90
Nacher, M., Singhasivanon, P., Silachamroon, U., Treeprasertsuk, S., Tosukhowong, T., Vannaphan, S., Gay, F., Mazier, D., & Looareesuwan, S. (2002) · Journal of Parasitology · doi:10.1645/0022-3395(2002)088[0097:dhchas]2.0.co;2 · Cited by 86
Interactive transcriptome analysis of malaria patients and infectingPlasmodium falciparumPreprint
Yamagishi, J., Natori, A., Tolba, M. E. M., Mongan, A. E., Sugimoto, C., Katayama, T., Kawashima, S., Makałowski, W., Maeda, R., Eshita, Y., et al. (2014) · Genome Research · doi:10.1101/gr.158980.113 · Cited by 80
Blankley, S., Berry, M. P. R., Graham, C. M., Bloom, C. I., Lipman, M. C. I., & O’Garra, A. (2014) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2013.0427 · Cited by 78
Zander, R., Guthmiller, J. J., Graham, A. C., Pope, R. L., Burke, B. E., Carr, D. J. J., & Butler, N. S. (2016) · PLoS Pathogens · doi:10.1371/journal.ppat.1005945 · Cited by 75
Higgins, S. J., Kain, K. C., & Liles, W. C. (2011) · Expert Review of Anti-infective Therapy · doi:10.1586/eri.11.96 · Cited by 72
Vembar, S. S., Droll, D., & Scherf, A. (2016) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1365 · Cited by 71
Iranmanesh, S. M., & Guo, N. L. (2014) · Cancer Informatics · doi:10.4137/cin.s14055 · Cited by 70
Stuck in a rut? Reconsidering the role of parasite sequestration in severe malaria syndromes
Cunnington, A. J., Riley, E. M., & Walther, M. R. (2013) · Trends in Parasitology · doi:10.1016/j.pt.2013.10.004 · Cited by 69
Self-citationChimma, P., Roussilhon, C., Sratongno, P., Ruangveerayuth, R., Pattanapanyasat, K., Pérignon, J., Roberts, D. J., & Druilhe, P. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000631 · Cited by 68
Marcil, V., Seidman, E. G., Sinnett, D., Boudreau, F., Gendron, F., Beaulieu, J., Ménard, D., Précourt, L., Amre, D. K., & Levy, E. H. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.155358 · Cited by 64
Emerging roles for hemostatic dysfunction in malaria pathogenesis
O’Sullivan, J. M., Preston, R. J. S., O’Regan, N., & O’Donnell, J. S. (2016) · Blood · doi:10.1182/blood-2015-11-636464 · Cited by 64
Cerebral malaria: gamma-interferon redux
Hunt, N. H., Ball, H. J., Hansen, A. M., Khaw, L. T., Guo, J. T., Bakmiwewa, S. M., Mitchell, A. J., Combes, V., & Grau, G. E. (2014) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2014.00113 · Cited by 62
Berens‐Riha, N., Kroidl, I., Schunk, M., Alberer, M., Beißner, M., Pritsch, M., Kroidl, A., Fröschl, G., Hanus, I., Bretzel, G., et al. (2014) · Malaria Journal · doi:10.1186/1475-2875-13-155 · Cited by 59
Dietmann, A., Helbok, R., Lackner, P., Issifou, S., Lell, B., Matsiegui, P., Reindl, M., Schmutzhard, E., & Kremsner, P. G. (2008) · The Journal of Infectious Diseases · doi:10.1086/587943 · Cited by 59
Piecing Together the Puzzle of Severe Malaria
Cunnington, A. J., Walther, M. R., & Riley, E. M. (2013) · Science Translational Medicine · doi:10.1126/scitranslmed.3007432 · Cited by 58
Self-citationBalu, B., Singh, N., Maher, S., & Adams, J. (2010) · PLoS ONE · doi:10.1371/journal.pone.0013282 · Cited by 58
Histone-Associated Thrombocytopenia in Patients Who Are Critically Ill
Alhamdi, Y., Abrams, S. T., Lane, S., Wang, G., & Toh, C. (2016) · JAMA · doi:10.1001/jama.2016.0136 · Cited by 54
Hamon, P., Loyher, P.-L., de Chanville, C. B., Licata, F., Combadière, C., & Boissonnas, A. (2016) · Blood · doi:10.1182/blood-2016-08-732164 · Cited by 53
Inferring Developmental Stage Composition from Gene Expression in Human Malaria
Cordy, R. J., Narasimhan, V. M., Montgomery, J. L., Sidhu, A. B. S., Oh, K., Meyer, E. C., Pierre-Louis, W., Seydel, K. B., Milner, D. A., Williamson, K. C., et al. (2013) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003392 · Cited by 52
Nakashima, A., Tanimura-Ito, K., Oshiro, N., Eguchi, S., Miyamoto, T., Momonami, A., Kamada, S., Yonezawa, K., & Kikkawa, U. (2013) · FEBS Letters · doi:10.1016/j.febslet.2013.07.027 · Cited by 49
Cunnington, A. J., Bretscher, M. T., Nogaro, S. I., Riley, E. M., & Walther, M. R. (2013) · Journal of Infection · doi:10.1016/j.jinf.2013.04.013 · Cited by 48
Self-citationTranscriptome Analysis Using RNA-Seq
Hoeijmakers, W. A. M., Bártfai, R., & Stunnenberg, H. G. (2012) · Methods in molecular biology · doi:10.1007/978-1-62703-026-7_15 · Cited by 45
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Metadata
- Authors
- Lee, H. J., Georgiadou, A., Walther, M., Nwakanma, D., Stewart, L. B., Levin, M., Otto, T. D., Conway, D. J., Coin, L. J., & Cunnington, A. J.
- Affiliations
- The University of Queensland (AU)
- London School of Hygiene & Tropical Medicine (GB)
- MRC Unit the Gambia (GM)
- Imperial College London (GB)
- Wellcome Sanger Institute (GB)
- Corresponding author
- Cunnington, Aubrey J.
- ORCID
- Venue
- Science Translational Medicine
- Published
- 2018-06-27
- Volume
- 10
- Issue
- 447
- ISSN
- 1946-6234 (ISSN-L)
- 1946-6242
- PMC
- PMC6326353
- OpenAlex
- W2766874071
- Cited by
- 141
- References
- 105
- Citations by year
- 2026: 4 · 2025: 11 · 2024: 17 · 2023: 24 · 2022: 24 · 2021: 14 · 2020: 23 · 2019: 19 · 2018: 5
- FWCI
- 14.75
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Locations
- Science Translational Medicine (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (acceptedVersion, cc-by-sa)
- LSHTM Research Online (London School of Hygiene and Tropical Medicine) (acceptedVersion)
- Spiral (Imperial College London) (submittedVersion)
- Funders
- Wellcome Trust (098051)
- Medical Research Council (MR/L006529/1)
- Topics
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Malaria Research and Control
- Health Sciences › Medicine › Genetics (clinical) › Hemoglobinopathies and Related Disorders
- Life Sciences › Immunology and Microbiology › Parasitology › Bird parasitology and diseases
- Keywords
- severe malaria, Plasmodium falciparum, host-pathogen interaction, transcriptome, pathogen load, translation genes, granulopoiesis, interferon-gamma, type I interferon signaling, disease severity, gene co-regulation
- MeSH terms
- Child, Child, Preschool, Female, Gene Expression Regulation, Humans, Male, Neutrophils, Plasmodium falciparum, Species Specificity, Malaria, Falciparum, Sequence Analysis, RNA, Parasitemia, Gene Expression Profiling, Gene Regulatory Networks, Host-Pathogen Interactions
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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