The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Lactose-Inducible System for Metabolic Engineering of Clostridium ljungdahlii
Open accessAbstract
The development of tools for genetic manipulation of Clostridium ljungdahlii has increased its attractiveness as a chassis for autotrophic production of organic commodities and biofuels from syngas and microbial electrosynthesis and established it as a model organism for the study of the basic physiology of acetogenesis. In an attempt to expand the genetic toolbox for C. ljungdahlii, the possibility of adapting a lactose-inducible system for gene expression, previously reported for Clostridium perfringens, was investigated. The plasmid pAH2, originally developed for C. perfringens with a gusA reporter gene, functioned as an effective lactose-inducible system in C. ljungdahlii. Lactose induction of C. ljungdahlii containing pB1, in which the gene for the aldehyde/alcohol dehydrogenase AdhE1 was downstream of the lactose-inducible promoter, increased expression of adhE1 30-fold over the wild-type level, increasing ethanol production 1.5-fold, with a corresponding decrease in acetate production. Lactose-inducible expression of adhE1 in a strain in which adhE1 and the adhE1 homolog adhE2 had been deleted from the chromosome restored ethanol production to levels comparable to those in the wild-type strain. Inducing expression of adhE2 similarly failed to restore ethanol production, suggesting that adhE1 is the homolog responsible for ethanol production. Lactose-inducible expression of the four heterologous genes necessary to convert acetyl coenzyme A (acetyl-CoA) to acetone diverted ca. 60% of carbon flow to acetone production during growth on fructose, and 25% of carbon flow went to acetone when carbon monoxide was the electron donor. These studies demonstrate that the lactose-inducible system described here will be useful for redirecting carbon and electron flow for the biosynthesis of products more valuable than acetate. Furthermore, this tool should aid in optimizing microbial electrosynthesis and for basic studies on the physiology of acetogenesis.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Gene expression reporter systems that function under anaerobic conditions have emerged, including the β-glucuronidase gene (gusA) (Girbal et al., 2003; Dong et al., 2012; Banerjee et al., 2014), chloramphenicol acetyltransferase gene (catP) (Heap et al., 2007; Zhang et al., 2015b), flavin-based fluorescent proteins (Drepper et al., 2007, 2010; Mukherjee and Schroeder, 2015), luxA-luxB reporter”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
In the citing paper
“A lactose-inducible system (bgaR-PbgaL) from Clostridium perfringens was successfully adapted for use in C. ljungdahlii (Banerjee et al., 2014) and a tetracycline inducible system (Tet3no) has been demonstrated in C. autoethanogenum (Walker and Köpke, 2015).”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
In the citing paper
“| C. ljungdahlii | Plasmid expression of C. acetobutylicum acetone biosynthetic genes (thlA-ctfAB-adc) under lactose inducible promoter | Production of up to 871 mg/L acetone from CO in bottles | Banerjee et al., 2014 |”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
In the citing paper
“Acetone production increased over 500x from H2/CO2 in C. ljungdahlii using the same genes but under control of an inducible system (Banerjee et al., 2014) and in A. woodii by combinatorial testing of different promoter and plasmid combinations (Hoffmeister et al., 2016).”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Acetone-butanol fermentation revisited
Jones, D. T., & Woods, D. (1986) · Microbiological Reviews · doi:10.1128/mr.50.4.484-524.1986 · Cited by 1,966
Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation
Ragsdale, S. W., & Pierce, E. (2008) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2008.08.012 · Cited by 1,409
Nevin, K. P., Woodard, T. L., Franks, A. E., Summers, Z. M., & Lovley, D. R. (2010) · mBio · doi:10.1128/mbio.00103-10 · Cited by 1,068
Self-citationNevin, K. P., Hensley, S. A., Franks, A. E., Summers, Z. M., Ou, J., Woodard, T. L., Snoeyenbos-West, O., & Lovley, D. R. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.02642-10 · Cited by 722
Self-citationThe ClosTron: a universal gene knock-out system for the genus Clostridium
Heap, J. T., Pennington, O. J., Cartman, S. T., Carter, G. P., & Minton, N. P. (2007) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2007.05.021 · Cited by 663
Clostridium ljungdahlii represents a microbial production platform based on syngas
Köpke, M., Held, C., Hujer, S., Liesegang, H., Wiezer, A., Wollherr, A., Ehrenreich, A., Liebl, W., Gottschalk, G., & Dürre, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1004716107 · Cited by 660
Potential for Direct Interspecies Electron Transfer in Methanogenic Wastewater Digester Aggregates
Morita, M., Malvankar, N. S., Franks, A. E., Summers, Z. M., Giloteaux, L., Rotaru, A., Rotaru, C., & Lovley, D. R. (2011) · mBio · doi:10.1128/mbio.00159-11 · Cited by 575
Self-citationKöpke, M., Mihalcea, C., Liew, F. E., Tizard, J. H., Ali, M., Conolly, J. J., Al‐Sinawi, B., & Simpson, S. D. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.00355-11 · Cited by 418
Tracy, B. P., Jones, S. W., Fast, A. G., Indurthi, D. C., & Papoutsakis, E. T. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.10.008 · Cited by 408
Enzymology of the Wood–Ljungdahl Pathway of Acetogenesis
Ragsdale, S. W. (2008) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1419.015 · Cited by 405
Lovley, D. R., & Nevin, K. P. (2013) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2013.02.012 · Cited by 353
Self-citationClostridium ljungdahlii sp. nov., an Acetogenic Species in Clostridial rRNA Homology Group I
Tanner, R. S., Miller, L. M., & Yang, D. (1993) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-43-2-232 · Cited by 303
Fast, A. G., & Papoutsakis, E. T. (2012) · Current Opinion in Chemical Engineering · doi:10.1016/j.coche.2012.07.005 · Cited by 251
A shift in the current: New applications and concepts for microbe-electrode electron exchange
Lovley, D. R., & Nevin, K. P. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.01.009 · Cited by 236
Self-citationTremblay, P., Zhang, T., Dar, S. A., Leang, C., & Lovley, D. R. (2012) · mBio · doi:10.1128/mbio.00406-12 · Cited by 206
Self-citationFermentative production of ethanol from carbon monoxide
Köpke, M., Mihalcea, C., Bromley, J. C., & Simpson, S. D. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.01.005 · Cited by 203
Leang, C., Ueki, T., Nevin, K. P., & Lovley, D. R. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.02891-12 · Cited by 202
Self-citationLeang, C., Malvankar, N. S., Franks, A. E., Nevin, K. P., & Lovley, D. R. (2013) · Energy & Environmental Science · doi:10.1039/c3ee40441b · Cited by 163
Self-citationTummala, S. B., Welker, N. E., & Papoutsakis, E. T. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.9.3793-3799.1999 · Cited by 130
Al-Hinai, M. A., Fast, A. G., & Papoutsakis, E. T. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.02214-12 · Cited by 122
Cotter, J. L., Chinn, M. S., & Grunden, A. M. (2008) · Bioprocess and Biosystems Engineering · doi:10.1007/s00449-008-0256-y · Cited by 115
Cotter, J. L., Chinn, M. S., & Grunden, A. M. (2008) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2008.11.002 · Cited by 114
Acetogenic bacteria: what are the in situ consequences of their diverse metabolic versatilities?
Drake, H. L., Daniel, S. L., Küsel, K., Matthies, C., Kuhner, C. H., & Braus‐Stromeyer, S. A. (1997) · BioFactors · doi:10.1002/biof.5520060103 · Cited by 110
Hartman, A. H., Liu, H., & Melville, S. B. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.01536-10 · Cited by 94
Expression from the Clostridium perfringens cpe promoter in C. perfringens and Bacillus subtilis
Melville, S. B., Labbé, R. G., & Sonenshein, A. L. (1994) · Infection and Immunity · doi:10.1128/iai.62.12.5550-5558.1994 · Cited by 82
Girbal, L., Mortier-Barrière, I., Raynaud, F., Rouanet, C., Croux, C., & Soucaille, P. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.8.4985-4988.2003 · Cited by 74
Nuyts, S., Mellaert, L. V., Theys, J., Landuyt, W., Lambin, P., & Anné, J. (2001) · Radiation Research · doi:10.1667/0033-7587(2001)155[0716:tuorib]2.0.co;2 · Cited by 69
Dong, H., Tao, W., Zhang, Y., & Li, Y. (2012) · Metabolic Engineering · doi:10.1016/j.ymben.2011.10.004 · Cited by 65
Zhang, Y., Shang, X., Lai, S., Zhang, G., Liang, Y., & Wen, T. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01147-12 · Cited by 59
Characterization and Development of Two Reporter Gene Systems for Clostridium acetobutylicum
Feustel, L., Nakotte, S., & Dürre, P. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.2.798-803.2004 · Cited by 55
Nariya, H., Miyata, S., Kuwahara, T., & Okabe, A. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.05668-11 · Cited by 42
Improving Butanol Fermentation To Enter the Advanced Biofuel Market
Tracy, B. P. (2012) · mBio · doi:10.1128/mbio.00518-12 · Cited by 36
Overview of Regulatory Strategies and Molecular Elements in Metabolic Engineering of Bacteria
Wang, T., Ma, X., Du, G., & Chen, J. (2012) · Molecular Biotechnology · doi:10.1007/s12033-012-9514-y · Cited by 23
Influence of Carbon Source Pre-Adaptation on Clostridium ljungdahlii Growth and Product Formation
Tirado-Acevedo, O., Cotter, J. L., Chinn, M. S., & Grunden, A. M. (2011) · Journal of Bioprocessing & Biotechniques · doi:10.4172/2155-9821.s2-001 · Cited by 14
Flagged first, then by citations
Cited by
Sorted by citations
Schuchmann, K., & Müller, V. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3365 · Cited by 845
Kracke, F., Vassilev, I., & Krömer, J. O. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00575 · Cited by 748
Industrial biomanufacturing: The future of chemical production
Clomburg, J. M., Crumbley, A. M., & González, R. (2017) · Science · doi:10.1126/science.aag0804 · Cited by 565
Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
Liew, F. E., Nogle, R., Abdalla, T., Rasor, B. J., Canter, C. E., Jensen, R. O., Wang, L., Strutz, J., Chirania, P., Tissera, S. L. D., et al. (2022) · Nature Biotechnology · doi:10.1038/s41587-021-01195-w · Cited by 496
Self-citationLiew, F., Martin, M. E., Tappel, R. C., Heijstra, B. D., Mihalcea, C., & Köpke, M. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00694 · Cited by 485
Metadata
- Authors
- Banerjee, A., Leang, C., Ueki, T., Nevin, K. P., & Lovley, D. R.
- Affiliations
- University of Massachusetts Amherst (US)
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2014-04-15
- Volume
- 80
- Issue
- 8
- Pages
- 2410-2416
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- PMC
- PMC3993169
- OpenAlex
- W2120580364
- Cited by
- 126
- References
- 34
- Citations by year
- 2026: 7 · 2025: 9 · 2024: 7 · 2023: 5 · 2022: 16 · 2021: 15 · 2020: 7 · 2019: 13 · 2018: 7 · 2017: 12 · 2016: 10 · 2015: 14 · 2014: 4
- FWCI
- 5.47
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Applied and Environmental Microbiology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- U.S. Department of Energy (DEAR0000159)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Physical Sciences › Engineering › Biomedical Engineering › Biofuel production and bioconversion
- Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
- Keywords
- Clostridium ljungdahlii, aldehyde/alcohol dehydrogenase, ethanol production, acetate production, acetone production, acetogenesis, syngas fermentation, microbial electrosynthesis
- MeSH terms
- Acetone, Acetyl Coenzyme A, Alcohol Dehydrogenase, Ethanol, Carbon, Clostridium, Fructose, Lactose, Transcriptional Activation, Gene Expression, Gene Expression Regulation, Bacterial, Acetic Acid, Metabolic Engineering, Metabolic Flux Analysis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review