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Lactose-Inducible System for Metabolic Engineering of Clostridium ljungdahlii
Open accessAbstract
The development of tools for genetic manipulation of Clostridium ljungdahlii has increased its attractiveness as a chassis for autotrophic production of organic commodities and biofuels from syngas and microbial electrosynthesis and established it as a model organism for the study of the basic physiology of acetogenesis. In an attempt to expand the genetic toolbox for C. ljungdahlii, the possibility of adapting a lactose-inducible system for gene expression, previously reported for Clostridium perfringens, was investigated. The plasmid pAH2, originally developed for C. perfringens with a gusA reporter gene, functioned as an effective lactose-inducible system in C. ljungdahlii. Lactose induction of C. ljungdahlii containing pB1, in which the gene for the aldehyde/alcohol dehydrogenase AdhE1 was downstream of the lactose-inducible promoter, increased expression of adhE1 30-fold over the wild-type level, increasing ethanol production 1.5-fold, with a corresponding decrease in acetate production. Lactose-inducible expression of adhE1 in a strain in which adhE1 and the adhE1 homolog adhE2 had been deleted from the chromosome restored ethanol production to levels comparable to those in the wild-type strain. Inducing expression of adhE2 similarly failed to restore ethanol production, suggesting that adhE1 is the homolog responsible for ethanol production. Lactose-inducible expression of the four heterologous genes necessary to convert acetyl coenzyme A (acetyl-CoA) to acetone diverted ca. 60% of carbon flow to acetone production during growth on fructose, and 25% of carbon flow went to acetone when carbon monoxide was the electron donor. These studies demonstrate that the lactose-inducible system described here will be useful for redirecting carbon and electron flow for the biosynthesis of products more valuable than acetate. Furthermore, this tool should aid in optimizing microbial electrosynthesis and for basic studies on the physiology of acetogenesis.
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“Gene expression reporter systems that function under anaerobic conditions have emerged, including the β-glucuronidase gene (gusA) (Girbal et al., 2003; Dong et al., 2012; Banerjee et al., 2014), chloramphenicol acetyltransferase gene (catP) (Heap et al., 2007; Zhang et al., 2015b), flavin-based fluorescent proteins (Drepper et al., 2007, 2010; Mukherjee and Schroeder, 2015), luxA-luxB reporter”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
In the citing paper
“A lactose-inducible system (bgaR-PbgaL) from Clostridium perfringens was successfully adapted for use in C. ljungdahlii (Banerjee et al., 2014) and a tetracycline inducible system (Tet3no) has been demonstrated in C. autoethanogenum (Walker and Köpke, 2015).”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
In the citing paper
“| C. ljungdahlii | Plasmid expression of C. acetobutylicum acetone biosynthetic genes (thlA-ctfAB-adc) under lactose inducible promoter | Production of up to 871 mg/L acetone from CO in bottles | Banerjee et al., 2014 |”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
In the citing paper
“Acetone production increased over 500x from H2/CO2 in C. ljungdahlii using the same genes but under control of an inducible system (Banerjee et al., 2014) and in A. woodii by combinatorial testing of different promoter and plasmid combinations (Hoffmeister et al., 2016).”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Banerjee et al., 2014
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Citations
Cites
Acetone-butanol fermentation revisited
Jones, D. T., & Woods, D. (1986) · Microbiological Reviews · doi:10.1128/mr.50.4.484-524.1986 · Cited by 1,966
Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation
Ragsdale, S. W., & Pierce, E. (2008) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2008.08.012 · Cited by 1,409
Nevin, K. P., Woodard, T. L., Franks, A. E., Summers, Z. M., & Lovley, D. R. (2010) · mBio · doi:10.1128/mbio.00103-10 · Cited by 1,068
Self-citationNevin, K. P., Hensley, S. A., Franks, A. E., Summers, Z. M., Ou, J., Woodard, T. L., Snoeyenbos-West, O., & Lovley, D. R. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.02642-10 · Cited by 722
Self-citationThe ClosTron: a universal gene knock-out system for the genus Clostridium
Heap, J. T., Pennington, O. J., Cartman, S. T., Carter, G. P., & Minton, N. P. (2007) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2007.05.021 · Cited by 663
Clostridium ljungdahlii represents a microbial production platform based on syngas
Köpke, M., Held, C., Hujer, S., Liesegang, H., Wiezer, A., Wollherr, A., Ehrenreich, A., Liebl, W., Gottschalk, G., & Dürre, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1004716107 · Cited by 660
Potential for Direct Interspecies Electron Transfer in Methanogenic Wastewater Digester Aggregates
Morita, M., Malvankar, N. S., Franks, A. E., Summers, Z. M., Giloteaux, L., Rotaru, A., Rotaru, C., & Lovley, D. R. (2011) · mBio · doi:10.1128/mbio.00159-11 · Cited by 575
Self-citationKöpke, M., Mihalcea, C., Liew, F. E., Tizard, J. H., Ali, M., Conolly, J. J., Al‐Sinawi, B., & Simpson, S. D. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.00355-11 · Cited by 418
Tracy, B. P., Jones, S. W., Fast, A. G., Indurthi, D. C., & Papoutsakis, E. T. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.10.008 · Cited by 408
Enzymology of the Wood–Ljungdahl Pathway of Acetogenesis
Ragsdale, S. W. (2008) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1419.015 · Cited by 405
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Schuchmann, K., & Müller, V. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3365 · Cited by 845
Kracke, F., Vassilev, I., & Krömer, J. O. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00575 · Cited by 748
Industrial biomanufacturing: The future of chemical production
Clomburg, J. M., Crumbley, A. M., & González, R. (2017) · Science · doi:10.1126/science.aag0804 · Cited by 565
Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
Liew, F. E., Nogle, R., Abdalla, T., Rasor, B. J., Canter, C. E., Jensen, R. O., Wang, L., Strutz, J., Chirania, P., Tissera, S. L. D., et al. (2022) · Nature Biotechnology · doi:10.1038/s41587-021-01195-w · Cited by 496
Self-citationLiew, F., Martin, M. E., Tappel, R. C., Heijstra, B. D., Mihalcea, C., & Köpke, M. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00694 · Cited by 485
C1-carbon sources for chemical and fuel production by microbial gas fermentation
Dürre, P., & Eikmanns, B. J. (2015) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2015.03.008 · Cited by 250
CO2 fixation by anaerobic non-photosynthetic mixotrophy for improved carbon conversion
Jones, S. W., Fast, A. G., Carlson, E. D., Wiedel, C. A., Au, J., Antoniewicz, M. R., Papoutsakis, E. T., & Tracy, B. P. (2016) · Nature Communications · doi:10.1038/ncomms12800 · Cited by 192
Richter, H., Molitor, B., Diender, M., Sousa, D. Z., & Angenent, L. T. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01773 · Cited by 193
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Tremblay, P., & Zhang, T. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00201 · Cited by 190
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Ueki, T., Nevin, K. P., Woodard, T. L., & Lovley, D. R. (2014) · mBio · doi:10.1128/mbio.01636-14 · Cited by 175
Self-citationBacterial Anaerobic Synthesis Gas (Syngas) and CO 2 + H 2 Fermentation
Bengelsdorf, F. R., Beck, M. H., Erz, C., Hoffmeister, S., Karl, M. M., Riegler, P., Wirth, S., Poehlein, A., Weuster‐Botz, D., & Dürre, P. (2018) · Advances in applied microbiology · doi:10.1016/bs.aambs.2018.01.002 · Cited by 173
Transforming exoelectrogens for biotechnology using synthetic biology
TerAvest, M. A., & Ajo-Franklin, C. M. (2015) · Biotechnology and Bioengineering · doi:10.1002/bit.25723 · Cited by 161
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Kato, S. (2015) · Microbes and Environments · doi:10.1264/jsme2.me15028 · Cited by 149
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Giddings, C. G. S., Nevin, K. P., & Woodward, T. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00468 · Cited by 146
Self-citationChiranjeevi, P., & Patil, S. A. (2019) · Biotechnology Advances · doi:10.1016/j.biotechadv.2019.107468 · Cited by 145
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Hoffmeister, S., Gerdom, M., Bengelsdorf, F. R., Linder, S., Flüchter, S., Öztürk, H., Blümke, W., May, A., Fischer, R.-J., Bahl, H., et al. (2016) · Metabolic Engineering · doi:10.1016/j.ymben.2016.03.001 · Cited by 139
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Müller, V. (2019) · Trends in Biotechnology · doi:10.1016/j.tibtech.2019.05.008 · Cited by 135
Christodoulou, X., Okoroafor, T., Parry, S., & Velasquez‐Orta, S. B. (2017) · Journal of CO2 Utilization · doi:10.1016/j.jcou.2017.01.027 · Cited by 132
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Deutzmann, J. S., & Spormann, A. M. (2016) · The ISME Journal · doi:10.1038/ismej.2016.149 · Cited by 129
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Fast, A. G., Schmidt, E. D., Jones, S. W., & Tracy, B. P. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.11.014 · Cited by 119
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May, H. D., Evans, P. J., & LaBelle, E. V. (2016) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2016.09.004 · Cited by 121
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Bengelsdorf, F. R., Poehlein, A., Linder, S., Erz, C., Hummel, T., Hoffmeister, S., Daniel, R., & Dürre, P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01036 · Cited by 125
Shen, Y., Jarboe, L. R., Brown, R. C., & Wen, Z. (2015) · Biotechnology Advances · doi:10.1016/j.biotechadv.2015.10.006 · Cited by 112
Recent Developments of the Synthetic Biology Toolkit for Clostridium
Joseph, R. C., Kim, N. M., & Sandoval, N. R. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00154 · Cited by 115
Rediverting carbon flux in Clostridium ljungdahlii using CRISPR interference (CRISPRi)
Woolston, B. M., Emerson, D. F., Currie, D. H., & Stephanopoulos, G. N. (2018) · Metabolic Engineering · doi:10.1016/j.ymben.2018.06.006 · Cited by 108
Engineering Clostridium for improved solvent production: recent progress and perspective
Cheng, C., Bao, T., & Yang, S. (2019) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-019-09916-7 · Cited by 98
Kracke, F., Lai, B., Yu, S., & Krömer, J. O. (2017) · Metabolic Engineering · doi:10.1016/j.ymben.2017.12.003 · Cited by 95
Metabolic engineering in chemolithoautotrophic hosts for the production of fuels and chemicals
Nybo, S. E., Khan, N. E., Woolston, B. M., & Curtis, W. R. (2015) · Metabolic Engineering · doi:10.1016/j.ymben.2015.04.008 · Cited by 94
Pavan, M., Reinmets, K., Garg, S., Mueller, A. P., Marcellin, E., Köpke, M., & Valgepea, K. (2022) · Metabolic Engineering · doi:10.1016/j.ymben.2022.01.015 · Cited by 90
Gas fermentation: cellular engineering possibilities and scale up
Heijstra, B. D., Leang, C., & Juminaga, A. (2017) · Microbial Cell Factories · doi:10.1186/s12934-017-0676-y · Cited by 97
Self-citationQuraishi, M., Wani, K., Pandit, S., Gupta, P. K., Kumar, A., Lahiri, D., Jadhav, D. A., Ray, R. R., Jung, S. P., Thakur, V. K., et al. (2021) · Fermentation · doi:10.3390/fermentation7040291 · Cited by 91
Engineering microbial electrocatalysis for chemical and fuel production
Rosenbaum, M. A., & Henrich, A. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.03.003 · Cited by 85
Huang, H., Chai, C., Yang, S., Jiang, W., & Gu, Y. (2019) · Metabolic Engineering · doi:10.1016/j.ymben.2019.01.005 · Cited by 85
Philips, J., Rabaey, K., Lovley, D. R., & Vargas, M. (2017) · PLoS ONE · doi:10.1371/journal.pone.0170406 · Cited by 75
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Jin, S., Bae, J., Song, Y., Pearcy, N., Shin, J., Kang, S., Minton, N. P., Soucaille, P., & Cho, B. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21207639 · Cited by 73
Overcoming the energetic limitations of syngas fermentation
Molitor, B., Marcellin, E., & Angenent, L. T. (2017) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2017.10.003 · Cited by 73
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Bourgade, B., Minton, N. P., & Islam, M. A. (2021) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuab008 · Cited by 69
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Lee, H., Bae, J., Jin, S., Kang, S., & Cho, B. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.865168 · Cited by 70
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Gupta, P., Noori, M. T., Esteve‐Núñez, A., & Verma, N. (2021) · iScience · doi:10.1016/j.isci.2021.102294 · Cited by 64
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Molitor, B., Kirchner, K., Henrich, A., Schmitz, S., & Rosenbaum, M. A. (2016) · Scientific Reports · doi:10.1038/srep31518 · Cited by 61
Zhang, L., Zhao, R., Jia, D., Jiang, W., & Gu, Y. (2020) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2020.04.010 · Cited by 64
Lauer, I., Philipps, G., & Jennewein, S. (2022) · Microbial Cell Factories · doi:10.1186/s12934-022-01802-8 · Cited by 62
Flaiz, M., Ludwig, G., Bengelsdorf, F. R., & Dürre, P. (2021) · Biotechnology for Biofuels · doi:10.1186/s13068-021-01966-2 · Cited by 58
Jia, D., He, M., Yi, T., Shen, S., Zhu, X., Wang, Y., Zhuang, Y., Jiang, W., & Gu, Y. (2021) · ACS Synthetic Biology · doi:10.1021/acssynbio.1c00235 · Cited by 59
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Shin, H. J., Jung, K. A., Nam, C. W., & Park, J. M. (2017) · Bioresource Technology · doi:10.1016/j.biortech.2017.05.077 · Cited by 55
Philipps, G., de Vries, S., & Jennewein, S. (2019) · Biotechnology for Biofuels · doi:10.1186/s13068-019-1448-1 · Cited by 54
Poehlein, A., Zeldes, B. M., Flaiz, M., Böer, T., Lüschen, A., Höfele, F., Baur, K. S., Molitor, B., Kröly, C., Wang, M., et al. (2024) · Bioresource Technology · doi:10.1016/j.biortech.2024.131913 · Cited by 54
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Yang, Y., Nie, X., Jiang, Y., Yang, C., Gu, Y., & Jiang, W. (2018) · Biotechnology Advances · doi:10.1016/j.biotechadv.2018.02.012 · Cited by 51
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Li, Y., Jin, K., Zhang, L., Ding, Z., Gu, Z., & Shi, G. (2018) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.8b02857 · Cited by 42
Igarashi, K., & Kato, S. (2017) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-017-8421-3 · Cited by 42
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Self-citationArslan, K., Schoch, T., Höfele, F., Herrschaft, S., Oberlies, C., Bengelsdorf, F. R., Veiga, M. C., Dürre, P., & Kennes, C. (2022) · Biotechnology Journal · doi:10.1002/biot.202100515 · Cited by 44
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Schwarz, F. M., Ciurus, S., Jain, S., Baum, C., Wiechmann, A., Basen, M., & Müller, V. (2020) · Microbial Biotechnology · doi:10.1111/1751-7915.13663 · Cited by 35
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Metadata
- Authors
- Banerjee, A., Leang, C., Ueki, T., Nevin, K. P., & Lovley, D. R.
- Affiliations
- University of Massachusetts Amherst (US)
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2014-04-15
- Volume
- 80
- Issue
- 8
- Pages
- 2410-2416
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- PMC
- PMC3993169
- OpenAlex
- W2120580364
- Cited by
- 126
- References
- 34
- Citations by year
- 2026: 7 · 2025: 9 · 2024: 7 · 2023: 5 · 2022: 16 · 2021: 15 · 2020: 7 · 2019: 13 · 2018: 7 · 2017: 12 · 2016: 10 · 2015: 14 · 2014: 4
- FWCI
- 5.47
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Applied and Environmental Microbiology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- U.S. Department of Energy (DEAR0000159)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Physical Sciences › Engineering › Biomedical Engineering › Biofuel production and bioconversion
- Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
- Keywords
- Clostridium ljungdahlii, aldehyde/alcohol dehydrogenase, ethanol production, acetate production, acetone production, acetogenesis, syngas fermentation, microbial electrosynthesis
- MeSH terms
- Acetone, Acetyl Coenzyme A, Alcohol Dehydrogenase, Ethanol, Carbon, Clostridium, Fructose, Lactose, Transcriptional Activation, Gene Expression, Gene Expression Regulation, Bacterial, Acetic Acid, Metabolic Engineering, Metabolic Flux Analysis
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