Development of an anhydrotetracycline-inducible gene expression system for solvent-producing Clostridium acetobutylicum: a useful tool for strain engineering
Abstract
Clostridium acetobutylicum is an important solvent (acetone-butanol-ethanol) producing bacterium. However, a stringent, effective, and convenient-to-use inducible gene expression system that can be used for regulating the gene expression strength in C. acetobutylicum is currently not available. Here, we report an anhydrotetracycline-inducible gene expression system for solvent-producing bacterium C. acetobutylicum. This system consists of a functional chloramphenicol acetyltransferase gene promoter containing tet operators (tetO), Pthl promoter (thiolase gene promoter from C. acetobutylicum) controlling TetR repressor expression cassette, and the chemical inducer anhydrotetracycline (aTc). The optimized system, designated as pGusA2-2tetO1, allows gene regulation in an inducer aTc concentration-dependent way, with an inducibility of over two orders of magnitude. The stringency of TetR repression supports the introduction of the genes encoding counterselective marker into C. acetobutylicum, which can be used to increase the mutant screening efficiency. This aTc-inducible gene expression system will thus increase the genetic manipulation capability for engineering C. acetobutylicum.
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Gene expression reporter systems that function under anaerobic conditions have emerged, including the β-glucuronidase gene, chloramphenicol acetyltransferase gene, flavin-based fluorescent proteins, luxA-luxB reporter system, and lacZ gene from Thermoanaerobacterium thermosulfurogenes EM1.
“Gene expression reporter systems that function under anaerobic conditions have emerged, including the β-glucuronidase gene (gusA) (Girbal et al., 2003; Dong et al., 2012; Banerjee et al., 2014), chloramphenicol acetyltransferase gene (catP) (Heap et al., 2007; Zhang et al., 2015b), flavin-based fluorescent proteins (Drepper et al., 2007, 2010; Mukherjee and Schroeder, 2015), luxA-luxB reporter”
From Gas Fermentation—A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks (2016) · cites this paper as Dong et al., 2012
Cites
Bradford, M. M. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90527-3 · Cited by 255,302 · see citing works
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.
Datsenko, K., & Wanner, B. (2000) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.120163297 · Cited by 15,902 · see citing works
Chopra, I., & Roberts, M. (2001) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.65.2.232-260.2001 · Cited by 4,517 · see citing works
Acetone-butanol fermentation revisited
Jones, D. T., & Woods, D. (1986) · Microbiological Reviews · doi:10.1128/mr.50.4.484-524.1986 · Cited by 1,966 · see citing works
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
Martin, V. J. J., Pitera, D. J., Withers, S. T., Newman, J. D., & Keasling, J. D. (2003) · Nature Biotechnology · doi:10.1038/nbt833 · Cited by 1,720 · see citing works
Lutz, R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.6.1203 · Cited by 1,696 · see citing works
Synthetic biology: new engineering rules for an emerging discipline
Andrianantoandro, E., Basu, S., Karig, D. K., & Weiss, R. (2006) · Molecular Systems Biology · doi:10.1038/msb4100073 · Cited by 1,081 · see citing works
Terpe, K. (2006) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-006-0465-8 · Cited by 1,039 · see citing works
Fermentative butanol production by clostridia
Lee, S. Y., Park, J. H., Jang, S. H., Nielsen, L. K., Kim, J. H., & Jung, K. S. (2008) · Biotechnology and Bioengineering · doi:10.1002/bit.22003 · Cited by 1,033 · see citing works
beta-Glucuronidase from Escherichia coli as a gene-fusion marker.
Jefferson, R., Burgess, S. M., & Hirsh, D. (1986) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.83.22.8447 · Cited by 992 · see citing works
Nölling, J., Breton, G., Omelchenko, M. V., Makarova, K. S., Zeng, Q., Gibson, R., Lee, H. M., Dubois, J., Qiu, D., Hitti, J., et al. (2001) · Journal of Bacteriology · doi:10.1128/jb.183.16.4823-4838.2001 · Cited by 767 · see citing works
Refinement and standardization of synthetic biological parts and devices
Canton, B., Labno, A., & Endy, D. (2008) · Nature Biotechnology · doi:10.1038/nbt1413 · Cited by 749 · see citing works
The ClosTron: a universal gene knock-out system for the genus Clostridium
Heap, J. T., Pennington, O. J., Cartman, S. T., Carter, G. P., & Minton, N. P. (2007) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2007.05.021 · Cited by 663 · see citing works
Driving Forces Enable High-Titer Anaerobic 1-Butanol Synthesis in Escherichia coli
Shen, C. R., Lan, E. I., Dekishima, Y., Baez, A., Cho, K. M., & Liao, J. C. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.03034-10 · Cited by 623 · see citing works
MazF Cleaves Cellular mRNAs Specifically at ACA to Block Protein Synthesis in Escherichia coli
Zhang, Y., Zhang, J., Hoeflich, K. P., Ikura, M., Qing, G., & Inouye, M. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00402-7 · Cited by 563 · see citing works
Self-citationStructural basis of gene regulation by the tetracycline inducible Tet repressor-operator system.
Saenger, W., Hinrichs, W., Orth, P., Schnappinger, D., & Hillen, W. (2000) · Nature Structural Biology · doi:10.1038/73324 · Cited by 462 · see citing works
Selection and optimization of microbial hosts for biofuels production
Fischer, C. R., Klein‐Marcuschamer, D., & Stephanopoulos, G. N. (2008) · Metabolic Engineering · doi:10.1016/j.ymben.2008.06.009 · Cited by 384 · see citing works
Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor
Ehrt, S. (2005) · Nucleic Acids Research · doi:10.1093/nar/gni013 · Cited by 383 · see citing works
Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide
Lan, E. I., & Liao, J. C. (2011) · Metabolic Engineering · doi:10.1016/j.ymben.2011.04.004 · Cited by 382 · see citing works
Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production
Lütke‐Eversloh, T., & Bahl, H. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.01.011 · Cited by 369 · see citing works
Engineering solventogenic clostridia
Papoutsakis, E. T. (2008) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2008.08.003 · Cited by 332 · see citing works
Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824
Mermelstein, L. D., Welker, N. E., Bennett, G. N., & Papoutsakis, E. T. (1992) · Nature Biotechnology · doi:10.1038/nbt0292-190 · Cited by 249 · see citing works
Harris, L. M., Welker, N. E., & Papoutsakis, E. T. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.13.3586-3597.2002 · Cited by 230 · see citing works
Hirsch, A. K. H., & Grinsted, E. (1954) · Journal of Dairy Research · doi:10.1017/s0022029900007196 · Cited by 222 · see citing works
Green, E. M., Boynton, Z. L., Harris, L. M., Rudolph, F. B., Papoutsakis, E. T., & Bennett, G. N. (1996) · Microbiology · doi:10.1099/13500872-142-8-2079 · Cited by 216 · see citing works
Wiesenborn, D. P., Rudolph, F. B., & Papoutsakis, E. T. (1988) · Applied and Environmental Microbiology · doi:10.1128/aem.54.11.2717-2722.1988 · Cited by 200 · see citing works
Perůtka, J., Wang, W., Goerlitz, D. S., & Lambowitz, A. M. (2003) · Journal of Molecular Biology · doi:10.1016/j.jmb.2003.12.009 · Cited by 196 · see citing works
Complete Nucleotide Sequence of Tn 10
Chalmers, R., Sewitz, S. A., Lipkow, K., & Crellin, P. K. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.10.2970-2972.2000 · Cited by 195 · see citing works
Roos, J. W., McLaughlin, J. K., & Papoutsakis, E. T. (1985) · Biotechnology and Bioengineering · doi:10.1002/bit.260270518 · Cited by 175 · see citing works
Tummala, S. B., Welker, N. E., & Papoutsakis, E. T. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.6.1923-1934.2003 · Cited by 174 · see citing works
Antisense RNA Strategies for Metabolic Engineering of Clostridium acetobutylicum
Desai, R. P., & Papoutsakis, E. T. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.3.936-945.1999 · Cited by 172 · see citing works
Shao, L., Hu, S., Yang, Y., Gu, Y., Chen, J., Yang, Y., Jiang, W., & Yang, S. (2007) · Cell Research · doi:10.1038/cr.2007.91 · Cited by 165 · see citing works
Sillers, R., Chow, A., Tracy, B. P., & Papoutsakis, E. T. (2008) · Metabolic Engineering · doi:10.1016/j.ymben.2008.07.005 · Cited by 161 · see citing works
The application of Tet repressor in prokaryotic gene regulation and expression
Bertram, R., & Hillen, W. (2008) · Microbial Biotechnology · doi:10.1111/j.1751-7915.2007.00001.x · Cited by 160 · see citing works
Rodríguez-García, A., Combes, P., Pérez-Redondo, R., Smith, M. C. A., & Smith, M. C. M. (2005) · Nucleic Acids Research · doi:10.1093/nar/gni086 · Cited by 123 · see citing works
mazF, a novel counter-selectable marker for unmarked chromosomal manipulation in Bacillus subtilis
Zhang, X., Yan, X., Cui, Z., Hong, Q., & Li, S.-P. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl358 · Cited by 117 · see citing works
Gossen, M., & Bujard, H. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.18.4411 · Cited by 112 · see citing works
Quantitation of GUS Activity by Fluorometry
Gallagher, S. R. (1992) · Elsevier eBooks · doi:10.1016/b978-0-12-274010-7.50009-4 · Cited by 103 · see citing works
Hartman, A. H., Liu, H., & Melville, S. B. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.01536-10 · Cited by 94 · see citing works
Engineering Clostridium strain to accept unmethylated DNA
Dong, H., Zhang, Y., Dai, Z., & Li, Y. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009038 · Cited by 91 · see citing works
Self-citationZhu, L., Dong, H., Zhang, Y., & Li, Y. (2011) · Metabolic Engineering · doi:10.1016/j.ymben.2011.01.009 · Cited by 79 · see citing works
Self-citationGirbal, L., Mortier-Barrière, I., Raynaud, F., Rouanet, C., Croux, C., & Soucaille, P. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.8.4985-4988.2003 · Cited by 74 · see citing works
Nuyts, S., Mellaert, L. V., Theys, J., Landuyt, W., Lambin, P., & Anné, J. (2001) · Radiation Research · doi:10.1667/0033-7587(2001)155[0716:tuorib]2.0.co;2 · Cited by 69 · see citing works
Stim-Herndon, K. P., Petersen, D. J., & Bennett, G. N. (1995) · Gene · doi:10.1016/0378-1119(94)00838-j · Cited by 53 · see citing works
mazFas a counter-selectable marker for unmarked genetic modification ofPichia pastoris
Yang, J., Jiang, W., & Yang, S. (2009) · FEMS Yeast Research · doi:10.1111/j.1567-1364.2009.00503.x · Cited by 51 · see citing works
Construction of Escherichia coli gene expression level perturbation collection
Kashiwagi, A., Sakurai, T., Tsuru, S., Ying, B., Mori, K., & Yomo, T. (2008) · Metabolic Engineering · doi:10.1016/j.ymben.2008.08.002 · Cited by 30 · see citing works
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1 of the 47 references couldn’t be matched to a known paper.
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Liew, F., Martin, M. E., Tappel, R. C., Heijstra, B. D., Mihalcea, C., & Köpke, M. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00694 · Cited by 485 · see citing works
Commercial Biomass Syngas Fermentation.
Daniell, J., Köpke, M., & Simpson, S. (2012) · Energies · doi:10.3390/en5125372 · Cited by 444 · see citing works
Synthetic Biology and Metabolic Engineering
Stephanopoulos, G. N. (2012) · ACS Synthetic Biology · doi:10.1021/sb300094q · Cited by 276 · see citing works
Metabolic Engineering: Methodologies and Applications
Volk, M., Tran, V. G., Tan, S., Mishra, S., Fatma, Z., Boob, A. G., Li, H., Xue, P., Martin, T. A., & Zhao, H. (2022) · Chemical Reviews · doi:10.1021/acs.chemrev.2c00403 · Cited by 204 · see citing works
Pyne, M. E., Bruder, M. R., Moo‐Young, M., Chung, D. A., & Chou, C.-H. P. (2016) · Scientific Reports · doi:10.1038/srep25666 · Cited by 175 · see citing works
Targeted mutagenesis of the Clostridium acetobutylicum acetone–butanol–ethanol fermentation pathway
Cooksley, C. M., Zhang, Y., Wang, H., Redl, S., Winzer, K., & Minton, N. P. (2012) · Metabolic Engineering · doi:10.1016/j.ymben.2012.09.001 · Cited by 148 · see citing works
Self-citationLactose-inducible system for metabolic engineering of Clostridium ljungdahlii
Banerjee, A., Leang, C., Ueki, T., Nevin, K. P., & Lovley, D. R. (2014) · Applied and Environmental Microbiology · doi:10.1128/aem.03666-13 · Cited by 126 · see citing works
Recent Developments of the Synthetic Biology Toolkit for Clostridium
Joseph, R. C., Kim, N. M., & Sandoval, N. R. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00154 · Cited by 109 · see citing works
Rediverting carbon flux in Clostridium ljungdahlii using CRISPR interference (CRISPRi)
Woolston, B. M., Emerson, D. F., Currie, D. H., & Stephanopoulos, G. N. (2018) · Metabolic Engineering · doi:10.1016/j.ymben.2018.06.006 · Cited by 105 · see citing works
A two-plasmid inducible CRISPR/Cas9 genome editing tool for Clostridium acetobutylicum
Wasels, F., Jean-Marie, J., Collas, F., López-Contreras, A. M., & Ferreira, N. L. (2017) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2017.06.010 · Cited by 98 · see citing works
Chen, W., Zhang, S., Jiang, P., Yao, J., He, Y., Chen, L., Gui, X., Dong, Z., & Tang, S. (2015) · Metabolic Engineering · doi:10.1016/j.ymben.2015.05.004 · Cited by 98 · see citing works
Technical guide for genetic advancement of underdeveloped and intractable Clostridium
Pyne, M. E., Bruder, M., Moo-Young, M., Chung, D. A., & Chou, C. P. (2014) · Biotechnology Advances · doi:10.1016/j.biotechadv.2014.04.003 · Cited by 78 · see citing works
Application of new metabolic engineering tools for Clostridium acetobutylicum
Lütke‐Eversloh, T. (2014) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-014-5785-5 · Cited by 73 · see citing works
Genome Engineering of Eubacterium limosum Using Expanded Genetic Tools and the CRISPR-Cas9 System
Shin, J., Kang, S., Song, Y., Jin, S., Lee, J. S., Lee, J.-K., Kim, D. R., Kim, S. C., Cho, S., & Cho, B. (2019) · ACS Synthetic Biology · doi:10.1021/acssynbio.9b00150 · Cited by 71 · see citing works
Genetic and metabolic engineering challenges of C1-gas fermenting acetogenic chassis organisms
Bourgade, B., Minton, N. P., & Islam, M. A. (2021) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuab008 · Cited by 66 · see citing works
Li, T., Li, T., Ji, W., Wang, Q., Zhang, H. M., Chen, G., Lou, C., & Ouyang, Q. (2015) · Biotechnology Journal · doi:10.1002/biot.201400828 · Cited by 63 · see citing works
Kim, N. M., Sinnott, R. W., & Sandoval, N. R. (2019) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2019.09.009 · Cited by 58 · see citing works
Fu, G., Yue, J., Li, D., Li, Y., Lee, S. Y., & Zhang, D. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2119980119 · Cited by 52 · see citing works
Self-citationA functional recT gene for recombineering of Clostridium
Dong, H., Tao, W., Gong, F., Li, Y., & Zhang, Y. (2014) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2013.12.011 · Cited by 45 · see citing works
Self-citationNew CRISPR-Cas9 vectors for genetic modifications of Bacillus species
Toymentseva, A. A., & Altenbuchner, J. (2018) · FEMS Microbiology Letters · doi:10.1093/femsle/fny284 · Cited by 43 · see citing works
Yang, G., Jia, D., Jin, L., Jiang, Y., Wang, Y., Jiang, W., & Gu, Y. (2017) · ACS Synthetic Biology · doi:10.1021/acssynbio.7b00155 · Cited by 42 · see citing works
De novo biosynthesis of butyl butyrate in engineered Clostridium tyrobutyricum
Guo, X., Zhang, H., Feng, J., Yang, L., Luo, K., Fu, H., & Wang, J. (2023) · Metabolic Engineering · doi:10.1016/j.ymben.2023.03.009 · Cited by 41 · see citing works
A Synthetic Anhydrotetracycline-Controllable Gene Expression System in Ralstonia eutropha H16
Li, H., & Liao, J. C. (2014) · ACS Synthetic Biology · doi:10.1021/sb4001189 · Cited by 41 · see citing works
Status quo of tet regulation in bacteria
Bertram, R., Neumann, B., & Schuster, C. F. (2021) · Microbial Biotechnology · doi:10.1111/1751-7915.13926 · Cited by 40 · see citing works
Engineering Clostridium acetobutylicum for alcohol production
Hou, X., Peng, W., Xiong, L., Huang, C., Chen, X., Chen, X., & Zhang, W. (2013) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2013.04.013 · Cited by 40 · see citing works
A novel arabinose-inducible genetic operation system developed for Clostridium cellulolyticum
Zhang, J., Liu, Y., Cui, G., & Cui, Q. (2015) · Biotechnology for Biofuels · doi:10.1186/s13068-015-0214-2 · Cited by 32 · see citing works
Teng, L., Wang, K., Xu, J., & Xu, C. (2015) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2015.09.018 · Cited by 32 · see citing works
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Hocq, R., Bottone, S., Gautier, A., & Pflügl, S. (2023) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2023.1226889 · Cited by 29 · see citing works
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Diallo, M., Hocq, R., Collas, F., Chartier, G., Wasels, F., Wijaya, H. S., Werten, M. W. T., Wolbert, E. J. H., Kengen, S. W. M., John van der, O. O. S. T., et al. (2019) · Methods · doi:10.1016/j.ymeth.2019.07.022 · Cited by 31 · see citing works
Low-Carbon Fuel and Chemical Production by Anaerobic Gas Fermentation
Daniell, J., Nagaraju, S., Burton, F., Köpke, M., & Simpson, S. D. (2015) · Advances in biochemical engineering, biotechnology · doi:10.1007/10_2015_5005 · Cited by 28 · see citing works
Development of a regulatable plasmid-based gene expression system for Clostridium thermocellum
Mearls, E. B., Olson, D. G., Herring, C. D., & Lynd, L. R. (2015) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-015-6610-5 · Cited by 27 · see citing works
Wasels, F., Chartier, G., Hocq, R., & Ferreira, N. L. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.00408-20 · Cited by 24 · see citing works
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Gyulev, I. S., Willson, B. J., Hennessy, R. C., Krabben, P., Jenkinson, E. R., & Thomas, G. H. (2017) · ACS Synthetic Biology · doi:10.1021/acssynbio.7b00327 · Cited by 22 · see citing works
Fine-tuning of ecaA and pepc gene expression increases succinic acid production in Escherichia coli
Wang, J., Qin, D., Zhang, B., Li, Q., Li, S., Zhou, X., Dong, L., & Wang, D. (2015) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-015-6734-7 · Cited by 21 · see citing works
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Wang, Y., Janssen, H., & Blaschek, H. P. (2014) · doi:10.1002/9781118845394.ch9 · Cited by 17 · see citing works
Luan, G., Cai, Z., Gong, F., Dong, H., Zhao, L., Zhang, Y., & Li, Y. (2013) · Protein & Cell · doi:10.1007/s13238-013-3079-9 · Cited by 16 · see citing works
Self-citationBiosynthesis of cannabigerol and cannabigerolic acid: the gateways to further cannabinoid production
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Rebalancing Redox to Improve Biobutanol Production by Clostridium tyrobutyricum
Ma, C., Ou, J., Xu, N., Fierst, J. L., Yang, S., & Liu, X. (2015) · Bioengineering · doi:10.3390/bioengineering3010002 · Cited by 15 · see citing works
Sanford, P. A., & Woolston, B. M. (2024) · ACS Synthetic Biology · doi:10.1021/acssynbio.4c00253 · Cited by 13 · see citing works
Zhang, Y., Bailey, T. S., Kubiak, A. M., Lambin, P., & Theys, J. (2022) · ACS Synthetic Biology · doi:10.1021/acssynbio.2c00401 · Cited by 12 · see citing works
Self-citationTschaplinski, T. J., Charania, P., Engle, N. L., Giannone, R. J., Hettich, R. L., Klingeman, D. M., Poudel, S., Yang, Z. K., Simpson, S. D., Abdalla, T., et al. (2019) · doi:10.2172/1543199 · Cited by 12 · see citing works
Liu, F., Chen, C., Liu, Y., Bayer, E. A., Mizrahi, I., & Feng, Y. (2025) · Metabolic Engineering · doi:10.1016/j.ymben.2025.09.008 · Cited by 8 · see citing works
Yang, Z., Liu, Z., Fang, C., Yang, Y., Ren, C., Chen, Y., Zhu, L., Zhu, Z., Jiang, L., & Huang, H. (2026) · Trends in biotechnology · doi:10.1016/j.tibtech.2026.05.004 · Cited by 8 · see citing works
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Rostain, W., Zaplana, T., Boutard, M., Baum, C., Tabuteau, S., Sanitha, M., Ramya, M., Guss, A. M., Ettwiller, L. M., & Tolonen, A. C. (2022) · ACS Synthetic Biology · doi:10.1021/acssynbio.2c00385 · Cited by 7 · see citing works
Soltysiak, M. P. M., Ory, A. L. H., Lee, A. D., Christophersen, C. E., Jalihal, A. P., & Springer, M. (2025) · ACS Synthetic Biology · doi:10.1021/acssynbio.4c00806 · Cited by 6 · see citing works
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Joseph, R. C., Kelley, S. Q., Kim, N. M., & Sandoval, N. R. (2021) · Metabolic Engineering · doi:10.1002/9783527823468.ch16 · Cited by 1 · see citing works
Rourke, L. M., Byrt, C. S., Price, G. D., & Long, B. M. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.05.23.727450 · Cited by 1 · see citing works
Discovery of a novel gene involved in autolysis of Clostridium cells ESEARCH ARTICLE R
Yang, L., Bao, G., Zhu, Y., Dong, H., Zhang, Y., & Li, Y. (2013)
Self-citationHassan Mahmoud, M. A.-R. (2014) · OPen Access Repositorium der Universität Ulm (OPARU) (Ulm University) · doi:10.18725/oparu-3312
Metabolism and cell-to-cell interactions of anaerobic syntrophic Clostridia co-cultures
Streett, H. (2025) · Library, Museums and Press - UDSpace (University of Delaware) · doi:10.58088/pe3w-rj36
Prospect of Metabolic Engineering for Biochemical Production
Ruhal, R., & Kataria, R. (2022) · Energy, environment, and sustainability · doi:10.1007/978-981-16-8682-5_20
9 Natural and Synthetic Gas for Productions of Liquid Fuels and Their Additives
Shah, Y. T. (2017) · CRC Press eBooks · doi:10.1201/9781315302355-10
Munir, S., Wan, S., Gao, X., Lai, M., Mu, Z., Wang, H., Liu, Z., Li, F., Xia, L., & Tan, Y. (2026) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-026-13714-3
Lopez-Garcia, O. K., Hejtmancik, T., Pizarro‐Guajardo, M., Brehm, L., Brito-Silva, C., & Paredes‐Sabja, D. (2026) · ACS Synthetic Biology · doi:10.1021/acssynbio.5c00961
- Authors
- Dong, H., Tao, W., Zhang, Y., & Li, Y.
- Affiliations
- Chinese Academy of Sciences (CN)
- Corresponding author
- Li, Yin
- Venue
- Metabolic Engineering
- Publisher
- Elsevier BV
- Published
- 2012-01
- Volume
- 14
- Issue
- 1
- Pages
- 59-67
- ISSN
- 1096-7176 (ISSN-L)
- OpenAlex
- W2065708815
- Cited by
- 65
- References
- 47
- Citations by year
- 2026: 4 · 2025: 3 · 2024: 1 · 2023: 4 · 2022: 7 · 2021: 5 · 2020: 2 · 2019: 5 · 2018: 3 · 2017: 4 · 2016: 2 · 2015: 9 · 2014: 9 · 2013: 4 · 2012: 3
- FWCI
- 2.08
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Metabolic Engineering (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Keywords
- Clostridium acetobutylicum, anhydrotetracycline, inducible gene expression, TetR repressor, tet operator, acetone-butanol-ethanol production, strain engineering, mutant screening
- MeSH terms
- Cyanobacteria, Carbon Dioxide, 1-Butanol, Metabolic Engineering
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