Bacterial topography of the healthy human lower respiratory tract

R: A Language and Environment for Statistical Computing

R Core Team (2000) · doi:10.32614/r.manuals · Cited by 355,706 · see citing works

A new look at the statistical model identification

Akaike, H. (1974) · IEEE Transactions on Automatic Control · doi:10.1109/tac.1974.1100705 · Cited by 51,879 · see citing works

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 20,966 · see citing works

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

Gu, Z., Eils, R., & Schlesner, M. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw313 · Cited by 10,122 · see citing works

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C., Turnbaugh, P. J., Fierer, N., & Knight, R. D. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000080107 · Cited by 9,633 · see citing works

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

Kozich, J. J., Westcott, S. L., Baxter, N. T., Highlander, S. K., & Schloss, P. D. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.01043-13 · Cited by 7,004 · see citing works

Vegan : community ecology package. R package version 1.17-9

Oksanen, J. (2007) · Medical Entomology and Zoology · Cited by 6,606 · see citing works

Pathologic Basis of Disease.

(1980) · Annals of Internal Medicine · doi:10.7326/0003-4819-92-3-460_4 · Cited by 4,593 · see citing works

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

Salter, S. J., Cox, M. J., Turek, E. M., Calus, S. T., Cookson, W. O., Moffatt, M. F., Turner, P., Parkhill, J., Loman, N. J., & Walker, A. W. (2014) · BMC Biology · doi:10.1186/s12915-014-0087-z · Cited by 3,463 · see citing works

Disordered Microbial Communities in Asthmatic Airways

Hilty, M., Burke, C. M., Pedro, H., Cárdenas, P., Bush, A., Bossley, C. J., Davies, J. C., Ervine, A., Poulter, L. W., Pachter, L. S., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0008578 · Cited by 1,825 · see citing works

mvabund– an R package for model‐based analysis of multivariate abundance data

Wang, Y., Naumann, U., Wright, S. T., & Warton, D. I. (2012) · Methods in Ecology and Evolution · doi:10.1111/j.2041-210x.2012.00190.x · Cited by 1,587 · see citing works

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

Charlson, E. S., Bittinger, K., Haas, A. R., Fitzgerald, A. S., Frank, I., Yadav, A., Bushman, F. D., & Collman, R. G. (2011) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201104-0655oc · Cited by 1,144 · see citing works

Analysis of the lung microbiome in the “healthy” smoker and in COPD.

Erb-Downward, J. R., Thompson, D. L., Han, M. K., Freeman, C. M., McCloskey, L., Schmidt, L. A., Young, V. B., Toews, G. B., Curtis, J. L., Sundaram, B., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016384 · Cited by 973 · see citing works

The Microbiome and the Respiratory Tract

Dickson, R. P., Erb-Downward, J. R., Martinez, F. J., & Huffnagle, G. B. (2016) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021115-105238 · Cited by 953 · see citing works

Analysis of the Upper Respiratory Tract Microbiotas as the Source of the Lung and Gastric Microbiotas in Healthy Individuals

Bassis, C. M., Erb-Downward, J. R., Dickson, R. P., Freeman, C. M., Schmidt, T. M., Young, V. B., Beck, J. M., Curtis, J. L., & Huffnagle, G. B. (2015) · mBio · doi:10.1128/mbio.00037-15 · Cited by 839 · see citing works

Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

Morris, A., Beck, J. M., Schloss, P. D., Campbell, T. B., Crothers, K., Curtis, J. L., Flores, S. C., Fontenot, A. P., Ghedin, E., Huang, L., et al. (2013) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201210-1913oc · Cited by 822 · see citing works

Pharyngeal aspiration in normal adults and patients with depressed consciousness

Huxley, E. J., Viroslav, J., Gray, W. R., & Pierce, A. K. (1978) · The American Journal of Medicine · doi:10.1016/0002-9343(78)90574-0 · Cited by 739 · cited 1× · see citing works

Conducting a microbiome study

Goodrich, J. K., Di Rienzi, S. C., Poole, A. C., Koren, O., Walters, W. A., Caporaso, J. G., Knight, R., & Ley, R. E. (2014) · Cell · doi:10.1016/j.cell.2014.06.037 · Cited by 714 · see citing works

Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype

Segal, L. N., Clemente, J. C., Tsay, J.-C. J., Koralov, S. B., Keller, B. C., Wu, B. G., Li, Y., Shen, N., Ghedin, E., Morris, A., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.31 · Cited by 685 · see citing works

Pharyngeal aspiration in normal adults and patients with depressed consciousness

(1978) · The American Journal of Medicine · doi:10.1016/0002-9343(78)90607-1 · Cited by 607 · see citing works

Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography

Dickson, R. P., Erb-Downward, J. R., Freeman, C. M., McCloskey, L., Beck, J. M., Huffnagle, G. B., & Curtis, J. L. (2015) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201501-029oc · Cited by 567 · see citing works

The Lung Microbiome: New Principles for Respiratory Bacteriology in Health and Disease

Dickson, R. P., & Huffnagle, G. B. (2015) · PLoS Pathogens · doi:10.1371/journal.ppat.1004923 · Cited by 562 · see citing works

The Lung Tissue Microbiome in Chronic Obstructive Pulmonary Disease

Sze, M. A., Dimitriu, P. A., Hayashi, S., Elliott, W. M., McDonough, J. E., Gosselink, J. V., Cooper, J. D., Sin, D. D., Mohn, W. W., & Hogg, J. C. (2012) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201111-2075oc · Cited by 552 · see citing works

Robbins Pathologic Basis of Disease

Chejfec, G. (1999) · Archives of Pathology & Laboratory Medicine · doi:10.5858/1999-123-859a-rpbod · Cited by 517 · see citing works

The role of the microbiome in exacerbations of chronic lung diseases

Dickson, R. P., Martinez, F. J., & Huffnagle, G. B. (2014) · The Lancet · doi:10.1016/s0140-6736(14)61136-3 · Cited by 495 · see citing works

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

Segal, L. N., Alekseyenko, A. V., Clemente, J. C., Kulkarni, R., Wu, B., Chen, H., Berger, K. I., Goldring, R. M., Rom, W. N., Blaser, M. J., et al. (2013) · Microbiome · doi:10.1186/2049-2618-1-19 · Cited by 482 · see citing works

Quantitative Aspiration During Sleep in Normal Subjects

Gleeson, K., Maxwell, S. L., & Eggli, D. F. (1997) · CHEST Journal · doi:10.1378/chest.111.5.1266 · Cited by 448 · see citing works

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

Venkataraman, A., Bassis, C. M., Beck, J. M., Young, V. B., Curtis, J. L., Huffnagle, G. B., & Schmidt, T. M. (2015) · mBio · doi:10.1128/mbio.02284-14 · Cited by 428 · see citing works

A fiberoptic bronchoscopy technique to obtain uncontaminated lower airway secretions for bacterial culture.

Wimberley, N., Faling, L. J., & Bartlett, J. G. (1979) · PubMed · doi:10.1164/arrd.1979.119.3.337 · Cited by 408 · see citing works

Lung microbiome and disease progression in idiopathic pulmonary fibrosis: an analysis of the COMET study

Han, M. K., Zhou, Y., Murray, S., Tayob, N., Noth, I., Lama, V. N., Moore, B. B., White, E. S., Flaherty, K. R., Hu, B., et al. (2014) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(14)70069-4 · Cited by 408 · see citing works

Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis

Dickson, R. P., Erb-Downward, J. R., & Huffnagle, G. B. (2014) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(14)70028-1 · Cited by 371 · see citing works

Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations

Dickson, R. P., Erb‐Downward, J. R., Freeman, C. M., Walker, N., Scales, B. S., Beck, J. M., Martínez, F. J., Curtis, J. L., Lama, V. N., & Huffnagle, G. B. (2014) · PLoS ONE · doi:10.1371/journal.pone.0097214 · Cited by 203 · see citing works

Epidemiology of Ventilator-acquired Pneumonia Based on Protected Bronchoscopic Sampling

George, D. L., Falk, P. S., Wunderink, R. G., Leeper, K. V., Meduri, G. U., Steere, E. L., Corbett, C., & Mayhall, C. G. (1998) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/ajrccm.158.6.9610069 · Cited by 196 · see citing works

Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

Charlson, E. S., Bittinger, K. L., Chen, J., Diamond, J. M., Li, H., Collman, R. G., & Bushman, F. D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042786 · Cited by 160 · see citing works

The internal surface area of the adult human lung.

Hasleton, P. S. (1972) · PubMed · Cited by 107 · see citing works

THE RELATIONSHIP OF SINUSITIS AND BRONCHIECTASIS

QUINN, L. H., & MEYER, O. O. (1929) · Archives of Otolaryngology - Head and Neck Surgery · doi:10.1001/archotol.1929.00620050048003 · Cited by 96 · see citing works

Cell-associated bacteria in the human lung microbiome

Dickson, R. P., Erb‐Downward, J. R., Prescott, H. C., Martínez, F. J., Curtis, J. L., Lama, V. N., & Huffnagle, G. B. (2014) · Microbiome · doi:10.1186/2049-2618-2-28 · Cited by 89 · see citing works

Investigative Bronchoprovocation and Bronchoscopy in Airway Diseases

Busse, W. W., Wanner, A., Adams, K., Reynolds, H. Y., Castro, M., Chowdhury, B. A., Kraft, M., Levine, R. J., Peters, S. P., & Sullivan, E. J. (2005) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.200407-966ws · Cited by 82 · see citing works

Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol

Möller, D. R., Koth, L. L., Maier, L. A., Morris, A., Drake, W. P., Rossman, M. D., Leader, J. K., Collman, R. G., Hamzeh, N. Y., Sweiss, N., et al. (2015) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201503-172ot · Cited by 81 · see citing works

Safety of investigative bronchoscopy in the Severe Asthma Research Program

Moore, W. C., Evans, M. D., Bleecker, E. R., Busse, W. W., Calhoun, W. J., Castro, M., Chung, K. F., ERZURUM, S. C., Curran‐Everett, D., Dweik, R. A., et al. (2011) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2011.02.042 · Cited by 78 · see citing works

Bronchoscopic diagnosis of pulmonary infiltrates in granulocytopenic patients with hematologic malignancies: BAL versus PSB and PBAL

Boersma, W. G., Erjavec, Z., van der Werf, T. S., de Vries-Hosper, H. G., Gouw, A. S. H., & Manson, W. L. (2006) · Respiratory Medicine · doi:10.1016/j.rmed.2006.04.021 · Cited by 68 · see citing works

The lung microbiome and exacerbations of COPD

Dy, R. V., & Sethi, S. (2016) · Current Opinion in Pulmonary Medicine · doi:10.1097/mcp.0000000000000268 · Cited by 60 · see citing works

Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS)

Freeman, C. M., Crudgington, S., Stolberg, V. R., Brown, J. P., Sonstein, J., Alexis, N. E., Doerschuk, C. M., Basta, P. V., Carretta, E. E., Couper, D. J., et al. (2015) · Journal of Translational Medicine · doi:10.1186/s12967-014-0374-z · Cited by 48 · see citing works

Presence of Tropheryma whipplei in Different Body Sites in a Cohort of Healthy Subjects

Qin, S., Clausen, E. S., Lucht, L. A., Michael, H., Beck, J. M., Curtis, J. L., Freeman, C. M., & Morris, A. M. (2016) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201601-0162le · Cited by 25 · see citing works

Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol

Strange, C., Senior, R. M., Sciurba, F. C., O’Neal, S., Morris, A. M., Wisniewski, S. R., Bowler, R. P., Hochheiser, H., Becich, M. J., Zhang, Y., et al. (2015) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201503-143oc · Cited by 16 · see citing works

The Role of Lung and Gut Microbiota in the Pathology of Asthma

Barcik, W., Boutin, R. C. T., Sokołowska, M., & Finlay, B. B. (2020) · Immunity · doi:10.1016/j.immuni.2020.01.007 · Cited by 618 · see citing works

The dynamic lung microbiome in health and disease

Natalini, J. G., Singh, S., & Segal, L. N. (2022) · Nature Reviews Microbiology · doi:10.1038/s41579-022-00821-x · Cited by 528 · see citing works

Analysis of Gut Microbiota in Patients with Parkinson’s Disease

Petrov, V. A., Saltykova, I. V., Zhukova, I. A., Alifirova, V. M., Zhukova, N. G., Dorofeeva, Y. B., Tyakht, A. V., Kovarsky, B. A., Alekseev, D. G., Kostryukova, E. S., et al. (2017) · Bulletin of Experimental Biology and Medicine · doi:10.1007/s10517-017-3700-7 · Cited by 487 · see citing works

Respiratory viral infection-induced microbiome alterations and secondary bacterial pneumonia.

Hanada, S., Pirzadeh, M., Carver, K. Y., & Deng, J. C. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.02640 · Cited by 495 · see citing works

Functional effects of the microbiota in chronic respiratory disease

Budden, K. F., Shukla, S. D., Rehman, S. F., Bowerman, K. L., Keely, S., Hugenholtz, P., Armstrong-James, D. P. H., Adcock, I. M., Chotirmall, S. H., Chung, K. F., et al. (2019) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(18)30510-1 · Cited by 450 · see citing works

The role of the lung microbiota and the gut–lung axis in respiratory infectious diseases

Dumas, A., Bernard, L., Poquet, Y., Lugo-Villarino, G., & Neyrolles, O. (2018) · Cellular Microbiology · doi:10.1111/cmi.12966 · Cited by 444 · see citing works

Lung microbiome: new insights into the pathogenesis of respiratory diseases

Li, R., Li, J., & Zhou, X. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01722-y · Cited by 466 · see citing works

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

Langelier, C., Kalantar, K. L., Moazed, F., Wilson, M. R., Crawford, E. D., Deiss, T., Belzer, A., Bolourchi, S., Caldera, S., Fung, M., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1809700115 · Cited by 411 · see citing works

Diet, Microbiota and Gut-Lung Connection

Anand, S., & Mande, S. S. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02147 · Cited by 409 · see citing works

Pathogenesis of pneumonia and acute lung injury

Long, M. E., Mallampalli, R. K., & Horowitz, J. C. (2022) · Clinical Science · doi:10.1042/cs20210879 · Cited by 410 · see citing works

Lung Microbiota Predict Clinical Outcomes in Critically Ill Patients

Dickson, R. P., Schultz, M. J., van der Poll, T., Schouten, L. R. A., Falkowski, N. R., Luth, J. E., Sjoding, M. W., Brown, C. A., Chanderraj, R., Huffnagle, G. B., et al. (2020) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201907-1487oc · Cited by 365 · see citing works

The role of the microbiota in infectious diseases

Libertucci, J., & Young, V. B. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0278-4 · Cited by 360 · see citing works

Commensal Fungi in Health and Disease

Limon, J. J., Skalski, J. H., & Underhill, D. M. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.07.002 · Cited by 336 · see citing works

Lower Airway Dysbiosis Affects Lung Cancer Progression

Tsay, J.-C. J., Wu, B. G., Sulaiman, I., Gershner, K., Schluger, R., Li, Y., Yie, T.-A., Meyn, P., Olsen, E., Perez, L., et al. (2021) · Cancer Discovery · doi:10.1158/2159-8290.cd-20-0263 · Cited by 322 · see citing works

At the Root: Defining and Halting Progression of Early Chronic Obstructive Pulmonary Disease

Martínez, F. J., Han, M. K., Allinson, J. P., Barr, R. G., Boucher, R. C., Calverley, P. M. A., Celli, B. R., Christenson, S. A., Crystal, R. G., Fagerås, M., et al. (2018) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201710-2028pp · Cited by 284 · see citing works

Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis

Yildiz, S., Mazel-Sanchez, B., Kandasamy, M., Manicassamy, B., & Schmolke, M. (2018) · Microbiome · doi:10.1186/s40168-017-0386-z · Cited by 264 · see citing works

Does the human placenta delivered at term have a microbiota? Results of cultivation, quantitative real-time PCR, 16S rRNA gene sequencing, and metagenomics

Theis, K. R., Romero, R. J., Winters, A. D., Greenberg, J. M., Gomez‐Lopez, N., Alhousseini, A., Bieda, J., Maymon, E., Pacora, P., Fettweis, J. M., et al. (2019) · American Journal of Obstetrics and Gynecology · doi:10.1016/j.ajog.2018.10.018 · Cited by 254 · see citing works

The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity

Dickson, R. P., Erb‐Downward, J. R., Falkowski, N. R., Hunter, E. M., Ashley, S. L., & Huffnagle, G. B. (2018) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201711-2180oc · Cited by 244 · see citing works

Difference of lower airway microbiome in bilateral protected specimen brush between lung cancer patients with unilateral lobar masses and control subjects

Liu, H., Tao, L., Zhang, J., Zhu, Y., Zheng, Y., Liu, D., Zhou, M., Ke, H., Shi, M., & Qu, J. (2018) · International Journal of Cancer · doi:10.1002/ijc.31098 · Cited by 235 · see citing works

The human microbiome in disease and pathology

Manos, J. (2022) · Apmis · doi:10.1111/apm.13225 · Cited by 231 · see citing works

Bacterial and viral respiratory tract microbiota and host characteristics in children with lower respiratory tract infections: a matched case-control study

Man, W. H., van Houten, M. A., Mérelle, M. E., Vlieger, A. M., Chu, M. L. J. N., Jansen, N. J. G., Sanders, E. A. M., & Bogaert, D. (2019) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(18)30449-1 · Cited by 213 · see citing works

The potential application of probiotics and prebiotics for the prevention and treatment of COVID-19

Olaimat, A. N., Aolymat, I., Al‐Holy, M., Ayyash, M. M., Abughoush, M. H., Al‐Nabulsi, A. A., Osaili, T. M. I., Apostolopoulos, V., Liu, S., & Shah, N. P. (2020) · npj Science of Food · doi:10.1038/s41538-020-00078-9 · Cited by 215 · see citing works

The lung microbiome in health and disease

Moffatt, M. F., & Cookson, W. (2017) · Clinical Medicine · doi:10.7861/clinmedicine.17-6-525 · Cited by 204 · see citing works

The lung microbiome: progress and promise

Whiteside, S. A., McGinniss, J. E., & Collman, R. G. (2021) · Journal of Clinical Investigation · doi:10.1172/jci150473 · Cited by 194 · see citing works

Methods in Lung Microbiome Research

Carney, S. M., Clemente, J. C., Cox, M. J., Dickson, R. P., Huang, Y. J., Kitsios, G. D., Kloepfer, K. M., Leung, J. M., LeVan, T. D., Molyneaux, P. L., et al. (2019) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2019-0273tr · Cited by 189 · see citing works

The Human Respiratory System and its Microbiome at a Glimpse

Santacroce, L., Charitos, I. A., Ballini, A., Inchingolo, F., Luperto, P., Nitto, E. D., & Topi, S. (2020) · Biology · doi:10.3390/biology9100318 · Cited by 186 · see citing works

Oral-lung microbiome interactions in lung diseases.

Mammen, M. J., Scannapieco, F. A., & Sethi, S. (2020) · Periodontology 2000 · doi:10.1111/prd.12301 · Cited by 179 · see citing works

Inhaled nanomaterials and the respiratory microbiome: clinical, immunological and toxicological perspectives

Poh, T. Y., Ali, N. A. B. M., Aogáin, M. M., Kathawala, M. H., Setyawati, M. I., Ng, K. W., & Chotirmall, S. H. (2018) · Particle and Fibre Toxicology · doi:10.1186/s12989-018-0282-0 · Cited by 172 · see citing works

Lung and gut microbiota are altered by hyperoxia and contribute to oxygen-induced lung injury in mice

Ashley, S. L., Sjoding, M. W., Popova, A. P., Cui, T. X., Hoostal, M. J., Schmidt, T. M., Branton, W. R., Dieterle, M. G., Falkowski, N. R., Baker, J. M., et al. (2020) · Science Translational Medicine · doi:10.1126/scitranslmed.aau9959 · Cited by 170 · see citing works

Initial acquisition and succession of the cystic fibrosis lung microbiome is associated with disease progression in infants and preschool children

Muhlebach, M. S., Zorn, B., Esther, C. R., Hatch, J., Murray, C. P. J., Turkovic, L., Ranganathan, S., Boucher, R. C., Stick, S. M., & Wolfgang, M. C. (2018) · PLoS Pathogens · doi:10.1371/journal.ppat.1006798 · Cited by 165 · see citing works

The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease

Pragman, A. A., Lyu, T., Baller, J. A., Gould, T. J., Kelly, R. F., Reilly, C. S., Isaacson, R. E., & Wendt, C. H. (2018) · Microbiome · doi:10.1186/s40168-017-0381-4 · Cited by 150 · see citing works

Early Life Microbiota and Respiratory Tract Infections

Piters, W. A. A. D. S., Binkowska, J. M., & Bogaert, D. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.07.004 · Cited by 148 · see citing works

The gut–airway microbiome axis in health and respiratory diseases

Özçam, M., & Lynch, S. V. (2024) · Nature Reviews Microbiology · doi:10.1038/s41579-024-01048-8 · Cited by 154 · see citing works

Microbiome dysbiosis in lung cancer: from composition to therapy

Liu, N., Ma, Q., Ge, Y., Yi, C., Wei, L., Tan, J.-C., Chu, Q., Li, J., Zhang, P., & Wang, H. (2020) · npj Precision Oncology · doi:10.1038/s41698-020-00138-z · Cited by 145 · see citing works

Lung microbiome composition and bronchial epithelial gene expression in patients with COPD versus healthy individuals: a bacterial 16S rRNA gene sequencing and host transcriptomic analysis

Ramsheh, M. Y., Haldar, K., Esteve‐Codina, A., Purser, L., Richardson, M., Müller–Quernheim, J., Greulich, T., Nowiński, A., Barta, I., Stendardo, M., et al. (2021) · The Lancet Microbe · doi:10.1016/s2666-5247(21)00035-5 · Cited by 137 · see citing works

Episodic Aspiration with Oral Commensals Induces a MyD88-Dependent, Pulmonary T-Helper Cell Type 17 Response that Mitigates Susceptibility to Streptococcus Pneumoniae

Wu, B. G., Sulaiman, I., Tsay, J.-C. J., Perez, L., Franca, B., Li, Y., Wang, J., Gonzalez, A. N., El-Ashmawy, M., Carpenito, J., et al. (2020) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.202005-1596oc · Cited by 136 · see citing works

The Host Microbiota Contributes to Early Protection Against Lung Colonization by Mycobacterium tuberculosis

Dumas, A., Corral, D., Colom, A., Levillain, F., Peixoto, A., Hudrisier, D., Poquet, Y., & Neyrolles, O. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.02656 · Cited by 130 · see citing works

Bacterial-Host Interactions: Physiology and Pathophysiology of Respiratory Infection

Håkansson, A., Orihuela, C. J., & Bogaert, D. (2018) · Physiological Reviews · doi:10.1152/physrev.00040.2016 · Cited by 126 · see citing works

The “Gum–Gut” Axis in Inflammatory Bowel Diseases: A Hypothesis-Driven Review of Associations and Advances

Byrd, K. M., & Gulati, A. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.620124 · Cited by 118 · see citing works

Subchronic exposure to concentrated ambient PM2.5 perturbs gut and lung microbiota as well as metabolic profiles in mice

Ran, Z., An, Y., Zhou, J., Yang, H. J., Zhang, Y., Yang, J., Wang, L., Li, X., Lu, D., Zhong, J. S., et al. (2020) · Environmental Pollution · doi:10.1016/j.envpol.2020.115987 · Cited by 121 · see citing works

Bacterial biogeography of adult airways in atopic asthma

Durack, J., Huang, Y. J., Nariya, S., Christian, L. S., Ansel, K. M., Beigelman, A., Castro, M., Dyer, A., Israel, E., Kraft, M., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0487-3 · Cited by 117 · see citing works

Evaluation of the airway microbiome in nontuberculous mycobacteria disease

Sulaiman, I., Wu, B. G., Li, Y., Scott, A. S., Malecha, P. W., Scaglione, B. D., Wang, J., Basavaraj, A., Chung, S., Bantis, K., et al. (2018) · European Respiratory Journal · doi:10.1183/13993003.00810-2018 · Cited by 111 · see citing works

Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients: a feasibility and clinical validity study

Yang, L., Haidar, G., Zia, H., Nettles, R., Qin, S., Wang, X., Shah, F. A., Rapport, S. F., Charalampous, T., Methé, B. A., et al. (2019) · Respiratory Research · doi:10.1186/s12931-019-1218-4 · Cited by 112 · see citing works

No effects without causes: the Iron Dysregulation and Dormant Microbes hypothesis for chronic, inflammatory diseases

Kell, D. B., & Pretorius, E. (2018) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/brv.12407 · Cited by 113 · see citing works

The Interplay Between Immune Response and Bacterial Infection in COPD: Focus Upon Non-typeable Haemophilus influenzae

Su, Y.-C., Jalalvand, F., Thegerström, J., & Riesbeck, K. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.02530 · Cited by 107 · see citing works

Pathophysiological role of respiratory dysbiosis in hospital-acquired pneumonia

Roquilly, A., Torres, A., Villadangos, J. A., Netea, M. G., Dickson, R. P., Becher, B., & Asehnoune, K. (2019) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(19)30140-7 · Cited by 107 · see citing works

The microbiota in pneumonia: From protection to predisposition

Thibeault, C., Suttorp, N., & Opitz, B. (2021) · Science Translational Medicine · doi:10.1126/scitranslmed.aba0501 · Cited by 107 · see citing works

BTS clinical statement on aspiration pneumonia

Simpson, A. J., Allen, J.-L., Chatwin, M., Crawford, H., Elverson, J., Ewan, V. C., Forton, J. T., McMullan, R., Plevris, J. N., Renton, K., et al. (2023) · Thorax · doi:10.1136/thorax-2022-219699 · Cited by 104 · see citing works

Topography of the respiratory tract bacterial microbiota in cattle

McMullen, C., Alexander, T. W., Léguillette, R., Workentine, M. L., & Timsit, E. (2020) · Microbiome · doi:10.1186/s40168-020-00869-y · Cited by 102 · see citing works

Akkermansia muciniphila in neuropsychiatric disorders: friend or foe?

Lei, W., Cheng, Y., Gao, J., Liu, X., Shao, L., Kong, Q., Zheng, N., Ling, Z., & Hu, W. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1224155 · Cited by 101 · see citing works

Distinct associations of sputum and oral microbiota with atopic, immunologic, and clinical features in mild asthma

Durack, J., Christian, L. S., Nariya, S., Gonzalez, J. R., Bhakta, N. R., Ansel, K. M., Beigelman, A., Castro, M., Dyer, A., Israel, E., et al. (2020) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2020.03.028 · Cited by 97 · see citing works

Microbial dysbiosis and mortality during mechanical ventilation: a prospective observational study

for the PROSPECT Investigators, Lamarche, D., Canadian Critical Care Trials Group, Canadian Critical Care Translational Biology Group, Johnstone, J., Zytaruk, N. L., Clarke, F. J., Hand, L. E., Loukov, D., Szamosi, J. C., et al. (2018) · Respiratory Research · doi:10.1186/s12931-018-0950-5 · Cited by 95 · see citing works

Airway Prevotella promote TLR2-dependent neutrophil activation and rapid clearance of Streptococcus pneumoniae from the lung

Horn, K. J., Schopper, M. A., Drigot, Z., & Clark, S. E. (2022) · Nature Communications · doi:10.1038/s41467-022-31074-0 · Cited by 94 · see citing works

The Lung Microbiome and Its Role in Pneumonia

Wu, B. G., & Segal, L. N. (2018) · Clinics in Chest Medicine · doi:10.1016/j.ccm.2018.07.003 · Cited by 90 · see citing works

Unique patterns of lower respiratory tract microbiota are associated with inflammation and hospital mortality in acute respiratory distress syndrome

Kyo, M., Nishioka, K., Nakaya, T., Kida, Y., Tanabe, Y., Ohshimo, S., & Shime, N. (2019) · Respiratory Research · doi:10.1186/s12931-019-1203-y · Cited by 90 · see citing works

Nutritional immunity: the impact of metals on lung immune cells and the airway microbiome during chronic respiratory disease

Healy, C. M., Muñoz‐Wolf, N., Strydom, J., Faherty, L., Williams, N. C., Kenny, S., Donnelly, S. C., & Cloonan, S. M. (2021) · Respiratory Research · doi:10.1186/s12931-021-01722-y · Cited by 89 · see citing works

Lung microbiota predict chronic rejection in healthy lung transplant recipients: a prospective cohort study

Combs, M. P., Wheeler, D., Luth, J. E., Falkowski, N. R., Walker, N., Erb‐Downward, J. R., Lama, V. N., & Dickson, R. P. (2021) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(20)30405-7 · Cited by 88 · see citing works

Therapeutic Targeting of the Respiratory Microbiome

Chotirmall, S. H., Bogaert, D., Chalmers, J. D., Cox, M. J., Hansbro, P. M., Huang, Y. J., Molyneaux, P. L., O’Dwyer, D. N., Pragman, A. A., Rogers, G. B., et al. (2022) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.202112-2704pp · Cited by 88 · see citing works

Effects of Inhaled Corticosteroid/Long-Acting β2-Agonist Combination on the Airway Microbiome of Patients with Chronic Obstructive Pulmonary Disease: A Randomized Controlled Clinical Trial (DISARM)

Filho, F. S. L., Takiguchi, H., Akata, K., Won, S. H., Moon, J.-Y., Kim, H. K., Cho, Y., Yamasaki, K., Milne, S. B., Yang, J., et al. (2021) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.202102-0289oc · Cited by 85 · see citing works

Robust airway microbiome signatures in acute respiratory failure and hospital-acquired pneumonia

Montassier, E., Kitsios, G. D., Radder, J. E., Bastard, Q. L., Kelly, B. J., Panzer, A. R., Lynch, S. V., Calfee, C. S., Dickson, R. P., & Roquilly, A. (2023) · Nature Medicine · doi:10.1038/s41591-023-02617-9 · Cited by 85 · see citing works

Neisseria species as pathobionts in bronchiectasis

Li, L., Aogáin, M. M., Xu, T., Jaggi, T. K., Chan, L., Qu, J., Wei, L., Liao, S., Cheng, H. S., Keir, H. R., et al. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2022.08.005 · Cited by 81 · see citing works

Respiratory Microbiome Profiling for Etiologic Diagnosis of Pneumonia in Mechanically Ventilated Patients

Kitsios, G. D., Fitch, A. C., Manatakis, D. V., Rapport, S. F., Li, K., Qin, S., Huwe, J., Zhang, Y., Doi, Y., Evankovich, J. W., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01413 · Cited by 80 · see citing works

Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19

Ventero, M. P., Cuadrat, R. R. C., Vidal, I., Andrade, B. G. N., Molina-Pardines, C., Haro-Moreno, J. M., Coutinho, F. H., Merino, E., Regitano, L. C. D. A., Silveira, C. B., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.637430 · Cited by 80 · see citing works

Identifying aerosolized cyanobacteria in the human respiratory tract: A proposed mechanism for cyanotoxin-associated diseases

Facciponte, D. N., Bough, M. W., Seidler, D., Carroll, J. L., Ashare, A., Andrew, A. S., Tsongalis, G. J., Vaickus, L. J., Henegan, P. L., Butt, T. H., et al. (2018) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2018.07.226 · Cited by 79 · see citing works

The importance of airway and lung microbiome in the critically ill

Martín‐Loeches, I., Dickson, R. P., Torres, A., Hanberger, H., Lipman, J., Antonelli, M. M., PASCALE, G. D., Bozza, F. A., Vincent, J., Murthy, S., et al. (2020) · Critical Care · doi:10.1186/s13054-020-03219-4 · Cited by 79 · see citing works

The human lung microbiome—A hidden link between microbes and human health and diseases

Yi, X., Gao, J., & Wang, Z. (2022) · iMeta · doi:10.1002/imt2.33 · Cited by 77 · see citing works

Anterior Nares Diversity and Pathobionts Represent Sinus Microbiome in Chronic Rhinosinusitis

Boeck, I. D., Wittouck, S., Martens, K., Claes, J., Jorissen, M., Steelant, B., van den Broek, M. F. L., Seys, S., Hellings, P. W., Vanderveken, O. M., et al. (2019) · mSphere · doi:10.1128/msphere.00532-19 · Cited by 75 · see citing works

Role of Gut Microbiome in COVID-19: An Insight Into Pathogenesis and Therapeutic Potential

Hussain, I., Cher, G. L. Y., Abid, M. A., & Abid, M. B. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.765965 · Cited by 72 · see citing works

Role of Lung Microbiome in Innate Immune Response Associated With Chronic Lung Diseases

Paudel, K. R., Dharwal, V., Patel, V. K., Galvão, I., Wadhwa, R., Malyla, V., Shen, S., Budden, K. F., Hansbro, N. G., Vaughan, A., et al. (2020) · Frontiers in Medicine · doi:10.3389/fmed.2020.00554 · Cited by 74 · see citing works

Direct Lung Sampling Indicates That Established Pathogens Dominate Early Infections in Children with Cystic Fibrosis

Jorth, P. A., Ehsan, Z., Rezayat, A., Caldwell, E., Pope, C. E., Brewington, J. J., Goss, C. H., Benscoter, D. T., Clancy, J. P., & Singh, P. K. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.03.086 · Cited by 72 · see citing works

Bacterial burden in the lower airways predicts disease progression in idiopathic pulmonary fibrosis and is independent of radiological disease extent

Invernizzi, R., Barnett, J. L., Rawal, B., Nair, A., Ghai, P., Kingston, S., Chua, F., Wu, Z., Wells, A. U., Renzoni, E., et al. (2020) · European Respiratory Journal · doi:10.1183/13993003.01519-2019 · Cited by 72 · see citing works

Respiratory microbiome in mechanically ventilated patients: a narrative review

Fromentin, M., Ricard, J.-D., & Roux, D. (2021) · Intensive Care Medicine · doi:10.1007/s00134-020-06338-2 · Cited by 72 · see citing works

A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation

Das, S., Bernasconi, E., Koutsokera, A., Wurlod, D.-A., Tripathi, V., Bonilla‐Rosso, G., Aubert, J., Derkenne, M.-F., Mercier, L., Pattaroni, C., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-22344-4 · Cited by 72 · see citing works

The Lung Microbiome and Pneumonia

Pettigrew, M. M., Tanner, W. D., & Harris, A. D. (2020) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiaa702 · Cited by 70 · see citing works

More of the Gut in the Lung: How Two Microbiomes Meet in ARDS.

Mukherjee, S., & Hanidziar, D. (2018) · Europe PMC (PubMed Central) · Cited by 66 · see citing works

Microbiota and Immunity during Respiratory Infections: Lung and Gut Affair

Marrella, V., Nicchiotti, F., & Cassani, B. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25074051 · Cited by 65 · see citing works

Understanding respiratory microbiome–immune system interactions in health and disease

Simone, S. K. D., Rudloff, I., Nold‐Petry, C. A., Forster, S. C., & Nold, M. F. (2023) · Science Translational Medicine · doi:10.1126/scitranslmed.abq5126 · Cited by 61 · see citing works

Past, Present, and Future Research on the Lung Microbiome in Inflammatory Airway Disease

Caverly, L. J., Huang, Y. J., & Sze, M. A. (2019) · CHEST Journal · doi:10.1016/j.chest.2019.05.011 · Cited by 61 · see citing works

Lung microbiota predict invasive pulmonary aspergillosis and its outcome in immunocompromised patients

Hérivaux, A., Willis, J. R., Mercier, T., Lagrou, K., Gonçalves, S. M., Gonçales, R. A., Maertens, J. A., Carvalho, A., Gabaldón, T., & Cunha, C. (2021) · Thorax · doi:10.1136/thoraxjnl-2020-216179 · Cited by 61 · see citing works

The Lung Microbiome in Idiopathic Pulmonary Fibrosis: A Promising Approach for Targeted Therapies

Fastrès, A., Felice, F., Roels, É., Moermans, C., Corhay, J.-L., Bureau, F., Louis, R. E., Clercx, C., & Guiot, J. (2017) · International Journal of Molecular Sciences · doi:10.3390/ijms18122735 · Cited by 59 · see citing works

Effects of smoking on the lower respiratory tract microbiome in mice

Zhang, R., Chen, L., Cao, L., Li, K., Huang, Y. H., Luan, X.-Q., & Li, G. (2018) · Respiratory Research · doi:10.1186/s12931-018-0959-9 · Cited by 59 · see citing works

Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota

Langelier, C., Kalantar, K., Moazed, F., Wilson, M. R., Crawford, E. D., Deiss, T. J., Belzer, A., Bolourchi, S., Caldera, S., Fung, M., et al. (2019) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00476.2018 · Cited by 59 · see citing works

Microbiome dysbiosis and epigenetic modulations in lung cancer: From pathogenesis to therapy

Khan, F. H., Bhat, B. A., Sheikh, B. A., Tariq, L., Padmanabhan, R., Verma, J. P., Shukla, A. C., Dowlati, A., & Abbas, A. (2021) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2021.07.005 · Cited by 59 · see citing works

Laboratory contamination in airway microbiome studies

Drengenes, C., Wiker, H. G., Kalananthan, T., Nordeide, E., Eagan, T., & Nielsen, R. (2019) · BMC Microbiology · doi:10.1186/s12866-019-1560-1 · Cited by 58 · see citing works

Phage therapy for pulmonary infections: lessons from clinical experiences and key considerations

Mitropoulou, G., Koutsokera, A., Csajka, C., Blanchon, S., Sauty, A., Brunet, J.-F., von Garnier, C., Resch, G., & Guery, B. P. (2022) · European Respiratory Review · doi:10.1183/16000617.0121-2022 · Cited by 55 · see citing works

The Lung Microbiome: A New Frontier for Lung and Brain Disease

Chen, J., Li, T., Ye, C., Zhong, J., Huang, J., Ke, Y., & Sun, H. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24032170 · Cited by 55 · see citing works

16S rDNA analysis of periodontal plaque in chronic obstructive pulmonary disease and periodontitis patients

Wu, X., Chen, J., Xu, M., Zhu, D., Wang, X., Chen, Y., Wu, J., Cui, C., Zhang, W., & Yu, L. (2017) · Journal of Oral Microbiology · doi:10.1080/20002297.2017.1324725 · Cited by 55 · see citing works

Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis

Erb‐Downward, J. R., Falkowski, N. R., D’Souza, J. C., McCloskey, L., McDonald, R. A., Brown, C. A., Shedden, K., Dickson, R. P., Freeman, C. M., Stringer, K. A., et al. (2020) · mBio · doi:10.1128/mbio.00258-20 · Cited by 55 · see citing works

The porcine respiratory microbiome: recent insights and future challenges

Pirolo, M., Espinosa‐Gongora, C., Bogaert, D., & Guardabassi, L. (2021) · Animal Microbiome · doi:10.1186/s42523-020-00070-4 · Cited by 54 · see citing works

Lower Airway Microbiota

Pulvirenti, G., Parisi, G. F., Giallongo, A., Papale, M. R., Manti, S., Savasta, S., Licari, A., Marseglia, G. L., & Leonardi, S. (2019) · Frontiers in Pediatrics · doi:10.3389/fped.2019.00393 · Cited by 52 · see citing works

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

Baker, J. M., Hinkle, K. J., McDonald, R. A., Brown, C. A., Falkowski, N. R., Huffnagle, G. B., & Dickson, R. P. (2021) · Microbiome · doi:10.1186/s40168-021-01055-4 · Cited by 52 · see citing works

Different responses of the oral, nasal and lung microbiomes to cigarette smoke

Pfeiffer, S., Herzmann, C., Gaede, K. I., Kovacevic, D., Krauss‐Etschmann, S., & Schloter, M. (2021) · Thorax · doi:10.1136/thoraxjnl-2020-216153 · Cited by 52 · see citing works

Longitudinal multicompartment characterization of host-microbiota interactions in patients with acute respiratory failure

Kitsios, G. D., Sayed, K., Fitch, A. C., Yang, H., Britton, N., Shah, F. A., Bain, W., Evankovich, J. W., Qin, S., Wang, X., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-48819-8 · Cited by 52 · see citing works

The contribution of infection and the respiratory microbiome in acute exacerbations of idiopathic pulmonary fibrosis

Invernizzi, R., & Molyneaux, P. L. (2019) · European Respiratory Review · doi:10.1183/16000617.0045-2019 · Cited by 53 · see citing works

Sputum microbiome profiling in COPD: beyond singular pathogen detection

Ditz, B., Christenson, S. A., Rossen, J. W. A., Brightling, C. E., Kerstjens, H. A. M., van den Berge, M., & Faiz, A. (2020) · Thorax · doi:10.1136/thoraxjnl-2019-214168 · Cited by 52 · see citing works

The chemistry of gut microbiome in health and diseases

Lau, A., Tan, L. T., Mutalib, N. A., Wong, S. H., Letchumanan, V., & Lee, L. (2021) · Progress In Microbes & Molecular Biology · doi:10.36877/pmmb.a0000175 · Cited by 52 · see citing works

The lung microbiome in lung transplantation

McGinniss, J. E., Whiteside, S. A., Simón‐Soro, Á., Diamond, J. M., Christie, J. D., Bushman, F. D., & Collman, R. G. (2021) · The Journal of Heart and Lung Transplantation · doi:10.1016/j.healun.2021.04.014 · Cited by 52 · see citing works

Immunomodulatory Properties of Vitamin D in the Intestinal and Respiratory Systems

Hamza, F. N., Daher, S., Fakhoury, H. M. A., Grant, W. B., Kvietys, P. R., & AlKattan, K. M. (2023) · Nutrients · doi:10.3390/nu15071696 · Cited by 51 · see citing works

Microbiome in interstitial lung disease

Salisbury, M. L., Han, M. K., Dickson, R. P., & Molyneaux, P. L. (2017) · Current Opinion in Pulmonary Medicine · doi:10.1097/mcp.0000000000000399 · Cited by 51 · see citing works

Host-microbe interactions in the pathogenesis and clinical course of sarcoidosis

Inaoka, P. T., Shono, M., Kamada, M., & Espinoza, J. L. (2019) · Journal of Biomedical Science · doi:10.1186/s12929-019-0537-6 · Cited by 51 · see citing works

Analysis of the Upper Respiratory Tract Microbiotas as the Source of the Lung and Gastric Microbiotas in Healthy Individuals

Bassis, C. M., Erb-Downward, J. R., Dickson, R. P., Freeman, C. M., Schmidt, T. M., Young, V. B., Beck, J. M., Curtis, J. L., & Huffnagle, G. B. (2015) · mBio · doi:10.1128/mbio.00037-15 · Cited by 839 · see citing works

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

Charlson, E. S., Bittinger, K., Haas, A. R., Fitzgerald, A. S., Frank, I., Yadav, A., Bushman, F. D., & Collman, R. G. (2011) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201104-0655oc · Cited by 1,144 · see citing works

Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

Charlson, E. S., Bittinger, K. L., Chen, J., Diamond, J. M., Li, H., Collman, R. G., & Bushman, F. D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042786 · Cited by 160 · see citing works

Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography

Dickson, R. P., Erb-Downward, J. R., Freeman, C. M., McCloskey, L., Beck, J. M., Huffnagle, G. B., & Curtis, J. L. (2015) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201501-029oc · Cited by 567 · see citing works

Methodological issues in airway microbiome studies

Drengenes, C. (2020) · NORA - Norwegian Open Research Archives