The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Cistrome: an integrative platform for transcriptional regulation studies
Open accessAbstract
The increasing volume of ChIP-chip and ChIP-seq data being generated creates a challenge for standard, integrative and reproducible bioinformatics data analysis platforms. We developed a web-based application called Cistrome, based on the Galaxy open source framework. In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Cistrome is available at http://cistrome.org/ap/.
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Cites
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“Tools exist for de novo motif discovery (e.g. PeakMotifs (9), MEME (10)) and for the enrichment analysis using libraries of position weight matrices (e.g. oPOSSUM-3 (4), the SeqPos tool in Cistrome (11) and Homer (7), although the latter is only available command-line).”
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Metadata
- Authors
- Liu, T., Ortiz, J. A., Taing, L., Meyer, C. A., Lee, B., Zhang, Y., Shin, H., Wong, S. S., Ma, J., Lei, Y., Pape, U. J., Poidinger, M., Chen, Y., Yeung, K., Brown, M., Turpaz, Y., & Liu, X. S.
- Venue
- Genome Biology
- Published
- 2011-08-22
- Volume
- 12
- Issue
- 8
- Pages
- R83-R83
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2125362831
- Cited by
- 716
- References
- 5
- FWCI
- 16.46
- Type
- journal article
- Language
- en
- Open access
- gold
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