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Methodological guidance for the evaluation and updating of clinical prediction models: a systematic review
Open accessAbstract
Background: Clinical prediction models are often not evaluated properly in specific settings or updated, for instance, with information from new markers. These key steps are needed such that models are fit for purpose and remain relevant in the long-term. We aimed to present an overview of methodological guidance for the evaluation (i.e., validation and impact assessment) and updating of clinical prediction models. Methods: We systematically searched nine databases from January 2000 to January 2022 for articles in English with methodological recommendations for the post-derivation stages of interest. Qualitative analysis was used to summarize the 70 selected guidance papers. Results: Key aspects for validation are the assessment of statistical performance using measures for discrimination (e.g., C-statistic) and calibration (e.g., calibration-in-the-large and calibration slope). For assessing impact or usefulness in clinical decision-making, recent papers advise using decision-analytic measures (e.g., the Net Benefit) over simplistic classification measures that ignore clinical consequences (e.g., accuracy, overall Net Reclassification Index). Commonly recommended methods for model updating are recalibration (i.e., adjustment of intercept or baseline hazard and/or slope), revision (i.e., re-estimation of individual predictor effects), and extension (i.e., addition of new markers). Additional methodological guidance is needed for newer types of updating (e.g., meta-model and dynamic updating) and machine learning-based models. Conclusion: Substantial guidance was found for model evaluation and more conventional updating of regression-based models. An important development in model evaluation is the introduction of a decision-analytic framework for assessing clinical usefulness. Consensus is emerging on methods for model updating.
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“Crucially, most studies evaluate models exclusively against retrospective labels, without systematic comparison to clinician judgment or assessment of clinical significance [13].”
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Metadata
- Authors
- Binuya, M. A. E., Engelhardt, E. G., Schats, W., Schmidt, M. K., & Steyerberg, E. W.
- Affiliations
- Leiden University Medical Center (NL)
- The Netherlands Cancer Institute (NL)
- Corresponding author
- Binuya, M. A. E.
- Venue
- BMC Medical Research Methodology
- Published
- 2022-12-12
- Volume
- 22
- Issue
- 1
- Pages
- 316-316
- ISSN
- 1471-2288 (ISSN-L)
- PMC
- PMC9742671
- OpenAlex
- W4311668966
- Cited by
- 246
- References
- 117
- Citations by year
- 2026: 114 · 2025: 58 · 2024: 51 · 2023: 23
- FWCI
- 4.77
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- BMC Medical Research Methodology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Leiden Repository (Leiden University) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Health~Holland (LSHM19121)
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods in Epidemiology
- Social Sciences › Decision Sciences › Statistics, Probability and Uncertainty › Meta-analysis and systematic reviews
- Health Sciences › Medicine › Family Practice › Clinical Reasoning and Diagnostic Skills
- Keywords
- clinical prediction model, model validation, model updating, methodological recommendations, discrimination (statistics), calibration, net benefit, recalibration, model revision, model extension, meta-model, dynamic updating, machine learning models, clinical utility
- MeSH terms
- Calibration, Humans, Prognosis, Models, Statistical
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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