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Carbon Catabolite Control of the Metabolic Network in Bacillus subtilis
Abstract
The histidine-containing protein (HPr) is the energy coupling protein of the phosphoenolpyruvate-dependent carbohydrate:phosphotransferase system (PTS), which catalyzes the transport of carbohydrates in bacteria. In Bacillus subtilis and close relatives, global regulation of carbon catabolite control occurs on the binding of the complex of CcpA (catabolite control protein A) and P-Ser-HPr (seryl-phosphorylated form of HPr) to the catabolite responsive elements (cre) of the target operons, the constituent genes of which are roughly estimated to number 300. The complex of CcpA and P-Ser-HPr triggers the expression of several genes involved in the formation of acetate and acetoin, major extracellular products of B. subtilis grown on glucose. It also triggers the expression of an anabolic operon (ilv-leu) involved in the biosynthesis of branched-chain amino acids, which subsequently leads to cell propagation. On the other hand, this complex represses many genes and operons, which include an entrance gene for the TCA cycle (citZ), several transporter genes for TCA cycle-intermediates, some respiration genes, and many catabolic and anabolic genes involved in carbon, nitrogen, and phosphate metabolism, as well as for certain extracellular enzymes and secondary metabolites. Furthermore, these bacteria have CcpA-independent catabolite regulation systems, each of which involves a transcriptional repressor of CggR or CcpN. CggR and CcpN are derepressed under glycolytic and gluconeogenic growth conditions, and enhance glycolysis and gluconeogenesis respectively. Another CcpA-independent catabolite repression system involves P-His-HPr (histidyl-phosphorylated form of HPr). P-His-HPr phosphorylates and activates glycerol kinase, whose product is necessary for antitermination of the glycerol utilization operon through GlpP, the antiterminators (LicT and SacT, Y) of several operons for the utilization of less-preferred PTS-sugars, and some transcriptional activators such as LevR for the levan utilization operon. This phosphorylation is reduced due to the decreased level of P-His-HPr during active transport of a preferred PTS-carbohydrate such as glucose, resulting in catabolite repression of the target operons.Thus CcpA-dependent and independent networks for carbon metabolism play a major role in the coordinate regulation of catabolism and anabolism to ensure optimum cell propagation in the presence and the absence of a preferred PTS-carbohydrate.
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Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria
Dar, D., Shamir, M., Mellin, J. R., Koutero, M., Stern-Ginossar, N., Cossart, P., & Sorek, R. (2016) · Science · doi:10.1126/science.aad9822 · Cited by 355
Microbial single-cell RNA sequencing by split-pool barcoding
Kuchina, A., Brettner, L. M., Paleologu, L., Roco, C. M., Rosenberg, A. B., Carignano, A., Kibler, R., Hirano, M., DePaolo, R. W., & Seelig, G. (2021) · Science · doi:10.1126/science.aba5257 · Cited by 340
Strategies for enhancing fermentative production of acetoin: A review
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Metadata
- Authors
- FUJITA, Y.
- Venue
- Bioscience, Biotechnology, and Biochemistry
- Publisher
- Informa UK Limited
- Published
- 2009-02-23
- Volume
- 73
- Issue
- 2
- Pages
- 245-259
- ISSN
- 0916-8451 (ISSN-L)
- 1347-6947
- OpenAlex
- W2022381548
- Cited by
- 297
- References
- 134
- FWCI
- 13.54
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.