The DOI matches its Crossref record; 43 of the 43 references it cites were found in a registry or an index.
Assembly Factor Omp85 Recognizes Its Outer Membrane Protein Substrates by a Species-Specific C-Terminal Motif
Open accessAbstract
Integral beta-barrel proteins are found in the outer membranes of Gram-negative bacteria, mitochondria, and chloroplasts. The assembly of these proteins requires a proteinaceous apparatus of which Omp85 is an evolutionary conserved central component. To study its molecular mechanism, we have produced Omp85 from Escherichia coli in inclusion bodies and refolded it in vitro. The interaction of Omp85 with its substrate proteins was studied in lipid-bilayer experiments, where it formed channels. The properties of these channels were affected upon addition of unfolded outer-membrane proteins (OMPs) or synthetic peptides corresponding to their C-terminal signature sequences. The interaction exhibited species specificity, explaining the inefficient assembly of OMPs from Neisseria in E. coli. Accordingly, the in vivo assembly of the neisserial porin PorA into the E. coli outer membrane was accomplished after adapting its signature sequence. These results demonstrate that the Omp85 assembly machinery recognizes OMPs by virtue of their C-terminal signature sequence.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Crystal structures explain functional properties of two E. coli porins
Cowan, S. W., Schirmer, T., Rummel, G., Steiert, M., Ghosh, R., Pauptit, R. A., Jansonius, J. N., & Rosenbusch, J. P. (1992) · Nature · doi:10.1038/358727a0 · Cited by 1,520
Lugtenberg, B., Meijers, J., Peters, R., van der Hoek, P., & van Alphen, L. (1975) · FEBS Letters · doi:10.1016/0014-5793(75)80272-9 · Cited by 1,416
Structure and function of bacterial outer membrane proteins: barrels in a nutshell
Koebnik, R., Locher, K. P., & Van Gelder, P. (2000) · Molecular Microbiology · doi:10.1046/j.1365-2958.2000.01983.x · Cited by 1,202
Wu, T., Malinverni, J., Ruiz, N., Kim, S., Silhavy, T. J., & Kahne, D. (2005) · Cell · doi:10.1016/j.cell.2005.02.015 · Cited by 769
Role of a Highly Conserved Bacterial Protein in Outer Membrane Protein Assembly
Voulhoux, R., Bos, M. P., Geurtsen, J., Mols, M., & Tommassen, J. (2003) · Science · doi:10.1126/science.1078973 · Cited by 742
Self-citationWalsh, N. P., Alba, B. M., Bose, B., Gross, C. A., & Sauer, R. T. (2003) · Cell · doi:10.1016/s0092-8674(03)00203-4 · Cited by 508
Struyvé, M., Moons, M., & Tommassen, J. (1991) · Journal of Molecular Biology · doi:10.1016/0022-2836(91)90880-f · Cited by 485
Self-citationEvolutionary conservation of biogenesis of β-barrel membrane proteins
Paschen, S. A., Waizenegger, T., Stan, T., Preuss, M., Cyrklaff, M., Hell, K., Rapaport, D., & Neupert, W. (2003) · Nature · doi:10.1038/nature02208 · Cited by 431
PROTEIN TRANSLOCATION BY THE SEC61/SECY CHANNEL
Osborne, A. R., Rapoport, T. A., & van den Berg, B. (2005) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.21.012704.133214 · Cited by 391
The Omp85 family of proteins is essential for outer membrane biogenesis in mitochondria and bacteria
Gentle, I., Gabriel, K., Beech, P., Waller, R., & Lithgow, T. (2004) · The Journal of Cell Biology · doi:10.1083/jcb.200310092 · Cited by 373
Structure of the translocator domain of a bacterial autotransporter
Oomen, C. J., van Ulsen, P., Van Gelder, P., Feijen, M., Tommassen, J., & Gros, P. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600148 · Cited by 362
Self-citationSurA assists the folding of Escherichia coli outer membrane proteins
Lazar, S. W., & Kolter, R. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.6.1770-1773.1996 · Cited by 326
Kozjak, V., Wiedemann, N., Milenkovic, D., Lohaus, C., Meyer, H. E., Guiard, B., Meisinger, C., & Pfanner, N. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.c300442200 · Cited by 311
Ruiz, N., Falcone, B., Kahne, D., & Silhavy, T. J. (2005) · Cell · doi:10.1016/j.cell.2005.02.014 · Cited by 306
Lerner, C. G., & Inouye, M. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.15.4631 · Cited by 269
NAKAMURA, K., & MIZUSHIMA, S. (1976) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a131414 · Cited by 264
Bos, M. P., Tefsen, B., Geurtsen, J., & Tommassen, J. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0402340101 · Cited by 255
Self-citationPore-forming activity of OmpA protein of Escherichia coli.
Sugawara, E., & Nikaido, H. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)45908-x · Cited by 249
Chapter 13 Blue-native gels to isolate protein complexes from mitochondria
Schägger, H. (2001) · Methods in Cell Biology · doi:10.1016/s0091-679x(01)65014-3 · Cited by 237
POTRA: a conserved domain in the FtsQ family and a class of β-barrel outer membrane proteins
Sánchez-Pulido, L., Devos, D., Genevrois, S., Vicente, M., & Valencia, A. (2003) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2003.08.003 · Cited by 236
Prilipov, A. (1998) · FEMS Microbiology Letters · doi:10.1016/s0378-1097(98)00151-7 · Cited by 234
Walton, T. A., & Sousa, M. C. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.07.023 · Cited by 221
Protein-translocating outer membrane porins of Gram-negative bacteria
Yen, M.-R., Peabody, C. R., Partovi, S. M., Zhai, Y., Tseng, Y.-H., & Saier, M. H. (2002) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/s0005-2736(02)00359-0 · Cited by 201
Secretin PulD: Association with pilot PulS, structure, and ion-conducting channel formation
Nouwen, N., Ranson, N., Saibil, H., Wolpensinger, B., Engel, A., Ghazi, A., & Pugsley, A. P. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.14.8173 · Cited by 195
Identification and characterization of porins in Pseudomonas aeruginosa.
Nikaido, H., Nikaido, K., & Harayama, S. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)35239-0 · Cited by 190
Werner, J., & Misra, R. (2005) · Molecular Microbiology · doi:10.1111/j.1365-2958.2005.04775.x · Cited by 170
Sen, K., Hellman, J., & Nikaido, H. (1988) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)57283-0 · Cited by 161
Origin of a chloroplast protein importer.
Bölter, B., Soll, J., Schulz, A., Hinnah, S., & Wagner, R. (1998) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.95.26.15831 · Cited by 158
Biogenesis of the Gram-negative bacterial outer membrane
Bos, M. P., & Tommassen, J. (2004) · Current Opinion in Microbiology · doi:10.1016/j.mib.2004.10.011 · Cited by 140
Self-citationPorin protein of Neisseria gonorrhoeae: cloning and gene structure.
Gotschlich, E. C., Seiff, M., Blake, M. S., & Koomey, M. (1987) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.84.22.8135 · Cited by 134
Omp85, an evolutionarily conserved bacterial protein involved in outer-membrane-protein assembly
Voulhoux, R., & Tommassen, J. (2003) · Research in Microbiology · doi:10.1016/j.resmic.2003.11.007 · Cited by 134
Self-citationThe endosymbiotic origin of the protein import machinery of chloroplastic envelope membranes
Reumann, S. (1999) · Trends in Plant Science · doi:10.1016/s1360-1385(99)01449-1 · Cited by 127
Doerrler, W. T., & Raetz, C. R. H. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m504796200 · Cited by 120
Harms, N., Koningstein, G. M., Dontje, W., Müller, M., Oudega, B., Luirink, J., & de Cock, H. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m011194200 · Cited by 108
Inoue, K., & Potter, D. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02135.x · Cited by 103
de Cock, H., Schäfer, U., Potgeter, M., et al. (1999) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.1999.00010.x · Cited by 97
Pettersson, A. M., van der Ley, P., POOLMAN, J. T., & Tommassen, J. (1993) · Infection and Immunity · doi:10.1128/iai.61.11.4724-4733.1993 · Cited by 90
Self-citationKlose, M., Schwarz, H., MacIntyre, S., Freudl, R., Eschbach, M.-L., & Henning, U. (1988) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)37703-2 · Cited by 74
Beucher, M., & Sparling, P. F. (1995) · Journal of Bacteriology · doi:10.1128/jb.177.8.2041-2049.1995 · Cited by 71
Folding of a bacterial outer membrane protein during passage through the periplasm
Eppens, E. F., Nouwen, N. P., & Tommassen, J. (1997) · The EMBO Journal · doi:10.1093/emboj/16.14.4295 · Cited by 66
Self-citationViability of a Capsule- and Lipopolysaccharide-Deficient Mutant of Neisseria meningitidis
Bos, M. P., & Tommassen, J. (2005) · Infection and Immunity · doi:10.1128/iai.73.9.6194-6197.2005 · Cited by 59
Self-citationThe assembly pathway of outer membrane protein PhoE of Escherichia coli
Jansen, C., Heutink, M., Tommassen, J., & de Cock, H. (2000) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.2000.01417.x · Cited by 55
Self-citationPettersson, A. M., Maas, A., van Wassenaar, D., van der Ley, P., & Tommassen, J. (1995) · Infection and Immunity · doi:10.1128/iai.63.10.4181-4184.1995 · Cited by 45
Self-citation
Cited by
Structural insight into the biogenesis of β-barrel membrane proteins
Noinaj, N., Kuszak, A. J., Gumbart, J. C., Lukacik, P., Chang, H., Easley, N. C., Lithgow, T., & Buchanan, S. K. (2013) · Nature · doi:10.1038/nature12521 · Cited by 431
β-Barrel Membrane Protein Assembly by the Bam Complex
Hagan, C. L., Silhavy, T. J., & Kahne, D. (2011) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-061408-144611 · Cited by 317
Dissecting Membrane Insertion of Mitochondrial β-Barrel Proteins
Kutik, S., Stojanovski, D., Becker, L., Becker, T., Meinecke, M., Krüger, V., Prinz, C., Meisinger, C., Guiard, B., Wagner, R., et al. (2008) · Cell · doi:10.1016/j.cell.2008.01.028 · Cited by 301
Type V secretion: mechanism(s) of autotransport through the bacterial outer membrane
Leo, J. C., Grin, I., & Linke, D. (2012) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2011.0208 · Cited by 269
General features of transmembrane beta barrels from a large database
Montezano, D., Bernstein, R., Copeland, M. M., & Slusky, J. S. G. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2220762120 · Cited by 17
Metadata
- Authors
- Robert, V., Volokhina, E. B., Senf, F., Bos, M. P., Gelder, P. V., & Tommassen, J.
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2006-11-07
- Volume
- 4
- Issue
- 11
- Pages
- e377
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- OpenAlex
- W2053754839
- Cited by
- 326
- References
- 43
- FWCI
- 11.31
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.