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The Deubiquitinating Enzyme UBPY Is Required for Lysosomal Biogenesis and Productive Autophagy in Drosophila

Jacomin, Anne-Claire, Bescond, Amandine, Soleilhac, Emmanuelle, Gallet, Benoît, Schoehn, Guy, Fauvarque, Marie-Odile, Taillebourg, Emmanuel·2015·PLOS ONE

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  1. NC Mulakkal, 2014, Autophagy in Drosophila: From Historical Studies to Current Knowledge, BioMed Research International, 2014, 24, 10.1155/2014/273473 · DOI
  2. Z Yang, 2010, Mammalian autophagy: core molecular machinery and signaling regulation, Current opinion in cell biology, 22, 124, 10.1016/j.ceb.2009.11.014 · DOI · Paper page
  3. XH Liang, 1999, Induction of autophagy and inhibition of tumorigenesis by beclin 1, Nature, 402, 672, 10.1038/45257 · DOI · Paper page
  4. DJ Klionsky, 2013, The mechanism and physiological function of macroautophagy, Journal of innate immunity, 5, 427, 10.1159/000351979 · DOI · Paper page
  5. T Johansen, 2011, Selective autophagy mediated by autophagic adapter proteins, Autophagy, 7, 279, 10.4161/auto.7.3.14487 · DOI
  6. C-S Shi, 2010, Traf6 and A20 differentially regulate TLR4-induced autophagy by affecting the ubiquitination of Beclin 1, Autophagy, 6, 986, 10.4161/auto.6.7.13288 · DOI
  7. HW Platta, 2012, Nedd4-dependent lysine-11-linked polyubiquitination of the tumour suppressor Beclin 1, Biochem J, 441, 399, 10.1042/BJ20111424 · DOI
  8. D Chen, 2010, Parkin mono-ubiquitinates Bcl-2 and regulates autophagy, J Biol Chem, 285, 38214, 10.1074/jbc.M110.101469 · DOI
  9. NA Kaniuk, 2007, Ubiquitinated-protein aggregates form in pancreatic beta-cells during diabetes-induced oxidative stress and are regulated by autophagy, Diabetes, 56, 930, 10.2337/db06-1160 · DOI
  10. TLM Thurston, 2009, The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria, Nat Immunol, 10, 1215, 10.1038/ni.1800 · DOI
  11. I Beau, 2008, Lost to translation: when autophagy targets mature ribosomes, Trends Cell Biol, 18, 311, 10.1016/j.tcb.2008.05.001 · DOI
  12. MJ Clague, 2013, Deubiquitylases from genes to organism, Physiol Rev, 93, 1289, 10.1152/physrev.00002.2013 · DOI
  13. ZM Eletr, 2014, Regulation of proteolysis by human deubiquitinating enzymes, Biochim Biophys Acta, 1843, 114, 10.1016/j.bbamcr.2013.06.027 · DOI
  14. SM Nijman, 2005, A genomic and functional inventory of deubiquitinating enzymes, Cell, 123, 773, 10.1016/j.cell.2005.11.007 · DOI · Paper page
  15. AP Hutchins, 2013, The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes, Mol Biol Evol, 30, 1172, 10.1093/molbev/mst022 · DOI
  16. W-L Tsou, 2012, Systematic analysis of the physiological importance of deubiquitinating enzymes, PLoS One, 7, e43112, 10.1371/journal.pone.0043112 · DOI
  17. M Broemer, 2010, Systematic in vivo RNAi analysis identifies IAPs as NEDD8-E3 ligases, Mol Cell, 40, 810, 10.1016/j.molcel.2010.11.011 · DOI
  18. J Zhang, 2012, A targeted in vivo RNAi screen reveals deubiquitinases as new regulators of Notch signaling, G3 (Bethesda), 2, 1563, 10.1534/g3.112.003780 · DOI
  19. E Engel, 2014, Identifying USPs regulating immune signals in Drosophila: USP2 deubiquitinates Imd and promotes its degradation by interacting with the proteasome, Cell Commun Signal, 12, 41, 10.1186/s12964-014-0041-2 · DOI
  20. C Kraft, 2008, Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease, Nat Cell Biol, 10, 602, 10.1038/ncb1723 · DOI · Paper page
  21. T Cornelissen, 2014, The deubiquitinase USP15 antagonizes Parkin-mediated mitochondrial ubiquitination and mitophagy, Human molecular genetics
  22. E Taillebourg, 2012, The deubiquitinating enzyme USP36 controls selective autophagy activation by ubiquitinated proteins, Autophagy, 8, 767, 10.4161/auto.19381 · DOI
  23. RC Scott, 2004, Role and regulation of starvation-induced autophagy in the Drosophila fat body, Dev Cell, 7, 167, 10.1016/j.devcel.2004.07.009 · DOI
  24. TP Neufeld, 2008, Genetic manipulation and monitoring of autophagy in Drosophila, Methods in enzymology, 451, 653, 10.1016/S0076-6879(08)03236-9 · DOI
  25. H Asha, 2003, Analysis of Ras-induced overproliferation in Drosophila hemocytes, Genetics, 163, 203, 10.1093/genetics/163.1.203 · DOI
  26. TE Rusten, 2004, Programmed autophagy in the Drosophila fat body is induced by ecdysone through regulation of the PI3K pathway, Dev Cell, 7, 179, 10.1016/j.devcel.2004.07.005 · DOI
  27. F Pignoni, 1997, Induction of Drosophila eye development by decapentaplegic, Development, 124, 271, 10.1242/dev.124.2.271 · DOI
  28. KM Hennig, 2006, TOR coordinates bulk and targeted endocytosis in the Drosophila melanogaster fat body to regulate cell growth, J Cell Biol, 173, 963, 10.1083/jcb.200511140 · DOI
  29. A Mukai, 2010, Balanced ubiquitylation and deubiquitylation of Frizzled regulate cellular responsiveness to Wg/Wnt, EMBO J, 29, 2114, 10.1038/emboj.2010.100 · DOI
  30. J Zhang, 2014, Ubpy controls the stability of the ESCRT-0 subunit Hrs in development, Development, 141, 1473, 10.1242/dev.099564 · DOI
  31. B Hasdemir, 2009, Endosomal deubiquitinating enzymes control ubiquitination and down-regulation of protease-activated receptor 2, J Biol Chem, 284, 28453, 10.1074/jbc.M109.025692 · DOI · Paper page
  32. E Mizuno, 2006, A deubiquitinating enzyme UBPY regulates the level of protein ubiquitination on endosomes, Traffic, 7, 1017, 10.1111/j.1600-0854.2006.00452.x · DOI
  33. E Mizuno, 2005, Regulation of epidermal growth factor receptor down-regulation by UBPY-mediated deubiquitination at endosomes, Mol Biol Cell, 16, 5163, 10.1091/mbc.E05-06-0560 · DOI · Paper page
  34. IP Nezis, 2008, Ref(2)P, the Drosophila melanogaster homologue of mammalian p62, is required for the formation of protein aggregates in adult brain, J Cell Biol, 180, 1065, 10.1083/jcb.200711108 · DOI · Paper page
  35. A Carre-Mlouka, 2007, Control of sigma virus multiplication by the ref(2)P gene of Drosophila melanogaster: an in vivo study of the PB1 domain of Ref(2)P, Genetics, 176, 409, 10.1534/genetics.106.063826 · DOI
  36. R Xia, 2012, USP8 promotes smoothened signaling by preventing its ubiquitination and changing its subcellular localization, PLoS Biol, 10, e1001238, 10.1371/journal.pbio.1001238 · DOI
  37. CY Lee, 2001, Steroid regulation of autophagic programmed cell death during development, Development, 128, 1443, 10.1242/dev.128.8.1443 · DOI
  38. MG Gutierrez, 2004, Rab7 is required for the normal progression of the autophagic pathway in mammalian cells, J Cell Sci, 117, 2687, 10.1242/jcs.01114 · DOI
  39. P Saftig, 2009, Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function, Nature reviews Molecular cell biology, 10, 623, 10.1038/nrm2745 · DOI · Paper page
  40. PE Joubert, 2009, Autophagy induction by the pathogen receptor CD46, Cell Host Microbe, 6, 354, 10.1016/j.chom.2009.09.006 · DOI
  41. S Sarkar, 2009, Methodological considerations for assessing autophagy modulators: a study with calcium phosphate precipitates, Autophagy, 5, 307, 10.4161/auto.5.3.7664 · DOI
  42. S Li, 2012, Hedgehog-regulated ubiquitination controls smoothened trafficking and cell surface expression in Drosophila, PLoS Biol, 10, e1001239, 10.1371/journal.pbio.1001239 · DOI
  43. F Hans, 2014, UBE2E ubiquitin-conjugating enzymes and ubiquitin isopeptidase Y regulate TDP-43 protein ubiquitination, J Biol Chem, 289, 19164, 10.1074/jbc.M114.561704 · DOI
  44. W Luo, 2012, CLOCK deubiquitylation by USP8 inhibits CLK/CYC transcription in Drosophila, Genes Dev, 26, 2536, 10.1101/gad.200584.112 · DOI
  45. K Pircs, 2012, Advantages and limitations of different p62-based assays for estimating autophagic activity in Drosophila, PLoS One, 7, e44214, 10.1371/journal.pone.0044214 · DOI
  46. RC Scott, 2007, Direct induction of autophagy by Atg1 inhibits cell growth and induces apoptotic cell death, Curr Biol, 17, 1, 10.1016/j.cub.2006.10.053 · DOI

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Metadata

Authors
Jacomin, A.-C., Bescond, A., Soleilhac, E., Gallet, B., Schoehn, G., Fauvarque, M.-O., & Taillebourg, E.
Venue
PLOS ONE
Published
2015-11-16
Volume
10
Issue
11
Pages
e0143078
ISSN
1932-6203
Cited by
30
References
9
Language
en

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