Cited by 248

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Regulation of Epidermal Growth Factor Receptor Down-Regulation by UBPY-mediated Deubiquitination at Endosomes

Mizuno, Emi, Iura, Takanobu, Mukai, Akiko, Yoshimori, Tamotsu, Kitamura, Naomi, Komada, Masayuki·2005·Molecular Biology of the Cell

Abstract

Ligand-activated receptor tyrosine kinases undergo endocytosis and are transported via endosomes to lysosomes for degradation. This “receptor down-regulation” process is crucial to terminate the cell proliferation signals produced by activated receptors. During the process, ubiquitination of the receptors serves as a sorting signal for their trafficking from endosomes to lysosomes. Here, we describe the role of a deubiquitinating enzyme UBPY/USP8 in the down-regulation of epidermal growth factor (EGF) receptor (EGFR). Overexpression of UBPY reduced the ubiquitination level of EGFR and delayed its degradation in EGF-stimulated cells. Immunopurified UBPY deubiquitinated EGFR in vitro. In EGF-stimulated cells, UBPY underwent ubiquitination and bound to EGFR. Overexpression of Hrs or a dominant-negative mutant of SKD1, proteins that play roles in the endosomal sorting of ubiquitinated receptors, caused the accumulation of endogenous UBPY on exaggerated endosomes. A catalytically inactive UBPY mutant clearly localized on endosomes, where it overlapped with EGFR when cells were stimulated with EGF. Finally, depletion of endogenous UBPY by RNA interference resulted in elevated ubiquitination and accelerated degradation of EGF-activated EGFR. We conclude that UBPY negatively regulates the rate of EGFR down-regulation by deubiquitinating EGFR on endosomes.

Overview

Integrity signals

Registry

Crossref · 10.1091/mbc.e05-06-0560

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 54

  1. Alroy, I., and Yarden, Y. (1997). The ErbB signaling network in embryogenesis and oncogenesis: signal diversification through combinatorial ligand-receptor interactions. FEBS Lett. 410 , 83–86. · DOI
  2. Amerik, A. Y., and Hochstrasser, M. (2004). Mechanism and function of deubiquitinating enzymes. Biochim. Biophys. Acta 1695 , 189–207. · DOI
  3. 10.1091/mbc.11.10.3365 · DOI
  4. Bache, K. G., Brech, A., Mehlum, A., and Stenmark, H. (2003a). Hrs regulates multivesicular body formation via ESCRT recruitment to endosomes. J. Cell Biol. 162 , 435–442. · DOI
  5. Bache, K. G., Raiborg, C., Mehlum, A., and Stenmark, H. (2003b). STAM and Hrs are subunits of a multivalent ubiquitin-binding complex on early endosomes. J. Biol. Chem. 278 , 12513–12521. · DOI · Paper page
  6. Baker, R. T., Wang, X.W., Woollatt, E., White, J. A., and Sutherland, G. R. (1999). Identification, functional characterization, and chromosomal localization of USP15, a novel human ubiquitin-specific protease related to the UNP oncoprotein, and a systematic nomenclature for human ubiquitin-specific proteases. Genomics 59 , 264–274. · DOI
  7. Bilodeau, P. S., Urbanowski, J. L., Winistorfer, S. C., and Piper, R. C. (2002). The Vps27p-Hse1p complex binds ubiquitin and mediates endosomal protein sorting. Nat. Cell Biol. 4 , 534–539. · DOI
  8. Bishop, N., Horman, A., and Woodman, P. (2002). Mammalian class E vps proteins recognize ubiquitin and act in the removal of endosomal protein-ubiquitin conjugates. J. Cell Biol. 157 , 91–102. · DOI
  9. 10.1091/mbc.11.1.227 · DOI
  10. Duan, L. et al . (2003). Cbl-mediated ubiquitylation is required for lysosomal sorting of epidermal growth factor receptor but is dispensable for endocytosis. J. Biol. Chem. 278 , 28950–28960. · DOI · Paper page
  11. Dupre, S., and Haguenauer-Tsapis, R. (2001). Deubiquitination step in the endocytic pathway of yeast plasma membrane proteins: crucial role of Doa4p ubiquitin isopeptidase. Mol. Cell. Biol. 21 , 4482–4494. · DOI
  12. Flint, A. J., Tiganis, T., Barford, D., and Tonks, N. K. (1997). Development of “substrate-trapping” mutants to identify physiological substrates of protein tyrosine phosphatases. Proc. Natl. Acad. Sci. USA 94 , 1680–1685. · DOI
  13. Gnesutta, N., Ceriani, M., Innocenti, M., Mauri, I., Zippel, R., Sturani, E., Borgonovo, B., Berruti, G., and Martegani, E. (2001). Cloning and characterization of mouse UBPy, a deubiquitinating enzyme that interacts with the Ras guanine nucleotide exchange factor CDC25 Mm /Ras-GRF1. J. Biol. Chem. 276 , 39448–39454. · DOI
  14. Gruenberg, J. (2001). The endocytic pathway: a mosaic of domains. Nat. Rev. Mol. Cell. Biol. 2 , 721–730. · DOI
  15. Haglund, K., Sigismund, S., Polo, S., Szymkiewicz, I., Di Fiore, P. P., and Dikic, I. (2003). Multiple monoubiquitination of RTKs is sufficient for their endocytosis and degradation. Nat. Cell Biol. 5 , 461–466. · DOI · Paper page
  16. 10.1091/mbc.e02-09-0578 · DOI
  17. Hicke, L. (2001). A new ticket for entry into budding vesicles-ubiquitin. Cell 106 , 527–530. · DOI
  18. Kanazawa, C., Morita, E., Yamada, M., Ishii, N., Miura, S., Asao, H., Yoshimori, T., and Sugamura, K. (2003). Effects of deficiencies of STAMs and Hrs, mammalian class E Vps proteins, on receptor downregulation. Biochem. Biophys. Res. Commun. 309 , 848–856. · DOI · Paper page
  19. Kaneko, T., Kumasaka, T., Ganbe, T., Sato, T., Miyazawa, K., Kitamura, N., and Tanaka, N. (2003). Structural insight into modest binding of a non-P XX P ligand to the signal transducing adaptor molecule-2 Src homology 3 domain. J. Biol. Chem. 278 , 48162–48168. · DOI · Paper page
  20. Kato, M., Miyazawa, K., and Kitamura, N. (2000). A deubiquitinating enzyme UBPY interacts with the Src homology 3 domain of Hrs-binding protein via a novel binding motif PX(V/I)(D/N)RXXKP. J. Biol. Chem. 275 , 37481–37487. · DOI · Paper page
  21. Katzmann, D. J., Babst, M., and Emr, S. D. (2001). Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I. Cell 106 , 145–155. · DOI
  22. Katzmann, D. J., Odorizzi, G., and Emr, S. D. (2002). Receptor downregulation and multivesicular-body sorting. Nat. Rev. Mol. Cell. Biol. 3 , 893–905. · DOI · Paper page
  23. Komada, M., and Kitamura, N. (1995). Growth factor-induced tyrosine phosphorylation of Hrs, a novel 115-kilodalton protein with a structurally conserved putative zinc finger domain. Mol. Cell. Biol. 15 , 6213–6221. · DOI · Paper page
  24. Komada, M., and Kitamura, N. (2005). The Hrs/STAM complex in the down-regulation of receptor tyrosine kinases. J. Biochem. 137 , 1–8. · DOI
  25. Komada, M., Masaki, R., Yamamoto, A., and Kitamura, N. (1997). Hrs, a tyrosine kinase substrate with a conserved double zinc finger domain, is localized to the cytoplasmic surface of early endosomes. J. Biol. Chem. 272 , 20538–20544. · DOI
  26. Lenferink, A.E.G., Pinkas-Kramarski, R., van de Poll, M.L.M., van Vugt, M.J.H., Klapper, L. N., Tzahar, E., Waterman, H., Sela, M., van Zoelen, E.J.J., and Yarden, Y. (1998). Differential endocytic routing of homo- and heterodimeric ErbB tyrosine kinases confers signaling superiority to receptor heterodimers. EMBO J. 17 , 3385–3397. · DOI
  27. Levkowitz, G., Waterman, H., Zamir, E., Kam, Z., Oved, S., Langdon, W. Y., Beguinot, L., Geiger, B., and Yarden, Y. (1998). c-Cbl/Sli-1 regulates endocytic sorting and ubiquitination of the epidermal growth factor receptor. Genes Dev. 12 , 3663–3674. · DOI
  28. Liu, F., and Chernoff, J. (1997). Protein tyrosine phosphatase 1B interacts with and is tyrosine phosphorylated by the epidermal growth factor receptor. Biochem. J. 327 , 139–145. · DOI
  29. Lloyd, T. E., Atkinson, R., Wu, M. N., Zhou, Y., Pennetta, G., and Bellen, H. J. (2002). Hrs regulates endosome membrane invagination and tyrosine kinase receptor signaling in Drosophila . Cell 108 , 261–269. · DOI · Paper page
  30. Longva, K. E., Blystad, F. D., Stang, E., Larsen, A. M., Johannessen, L. E., and Madshus, I. H. (2002). Ubiquitination and proteasomal activity is required for transport of the EGF receptor to inner membranes of multivesicular bodies. J. Cell Biol. 156 , 843–854. · DOI
  31. 10.1091/mbc.12.4.1047 · DOI
  32. Lu, Q., Hope, L. W., Brasch, M., Reinhard, C., and Cohen, S. N. (2003). TSG101 interaction with HRS mediates endosomal trafficking and receptor down-regulation. Proc. Natl. Acad. Sci. USA 100 , 7626–7631. · DOI · Paper page
  33. McCullough, J., Clague, M. J., and Urbe, S. (2004). AMSH is an endosome-associated ubiquitin isopeptidase. J. Cell Biol. 166 , 487–492. · DOI
  34. 10.1091/mbc.e02-12-0823 · DOI
  35. Mizuno, E., Kawahata, K., Okamoto, A., Kitamura, N., and Komada, M. (2004). Association with Hrs is required for the early endosomal localization, stability, and function of STAM. J. Biochem. 135 , 385–396. · DOI
  36. Morino, C., Kato, M., Yamamoto, A., Mizuno, E., Hayakawa, A., Komada, M., and Kitamura, N. (2004). A role for Hrs in endosomal sorting of ligand-stimulated and unstimulated epidermal growth factor receptor. Exp. Cell Res. 297 , 380–391. · DOI · Paper page
  37. Mosesson, Y., Shtiegman, K., Katz, M., Zwang, Y., Vereb, G., Szollosi, J., and Yarden, Y. (2003). Endocytosis of receptor tyrosine kinases is driven by monoubiquitination, not polyubiquitination. J. Biol. Chem. 278 , 21323–21326. · DOI · Paper page
  38. Naviglio, S., Matteucci, C., Matoskova, B., Nagase, T., Nomura, N., Di Fiore, P. P., and Draetta, G. F. (1998). UBPY: a growth-regulated human ubiquitin isopeptidase. EMBO J 17 , 3241–3250. · DOI · Paper page
  39. Peschard, P., Fournier, T. M., Lamorte, L., Naujokas, M. A., Band, H., Langdon, W. Y., and Park, M. (2001). Mutation of the c-Cbl TKB domain binding site on the Met receptor tyrosine kinase converts it into a transforming protein. Mol. Cell 8 , 995–1004. · DOI
  40. Raiborg, C., Bache, K. G., Gillooly, D. J., Helene Madshus, I., Stang, E., and Stenmark, H. (2002). Hrs sorts ubiquitinated proteins into clathrin-coated microdomains of early endosomes. Nat. Cell Biol. 4 , 394–398. · DOI · Paper page
  41. Shih, S. C., Katzmann, D. J., Schnell, J. D., Sutanto, M., Emr, S. D., and Hicke, L. (2002). Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis. Nat. Cell Biol. 4 , 389–393. · DOI
  42. Sigismund, S., Woelk, T., Puri, C., Maspero, E., Tacchetti, C., Transidico, P., Di Fiore, P. P., and Polo, S. (2005). Clathrin-independent endocytosis of ubiquitinated cargos. Proc. Natl. Acad. Sci. USA 102 , 2760–2765. · DOI · Paper page
  43. Soares, L., Seroogy, C., Skrenta, H., Anandasabapathy, N., Lovelace, P., Chung, C. D., Engleman, E., and Fathman, C. G. (2004). Two isoforms of otubain 1 regulate T cell anergy via GRAIL. Nat. Immunol. 5 , 45–54. · DOI
  44. Soboleva, T. A., and Baker, R. T. (2004). Deubiquitinating enzymes: their functions and substrate specificity. Curr. Protein Pept. Sci. 5 , 191–200. · DOI
  45. 10.1091/mbc.10.8.2583 · DOI
  46. Tanaka, N., Kaneko, K., Asao, H., Kasai, H., Endo, Y., Fujita, T., Takeshita, T., and Sugamura, K. (1999). Possible involvement of a novel STAM-associated molecule “AMSH” in intracellular signal transduction mediated by cytokines. J. Biol. Chem. 274 , 19129–19135. · DOI
  47. Thien, C.B.F., and Langdon, W. Y. (2001). Cbl: many adaptations to regulate protein tyrosine kinases. Nat. Rev. Mol. Cell. Biol. 2 , 294–305. · DOI
  48. Verma, R., Aravind, L., Oania, R., McDonald, W. H., Yates Spaceiiiqq, J. R., Koonin, E. V., and Deshaies, R. J. (2002). Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 298 , 611–615. · DOI
  49. 10.1091/mbc.10.5.1621 · DOI
  50. Wing, S. S. (2003). Deubiquitinating enzymes - the importance of driving in reverse along the ubiquitin-proteasome pathway. Int. J. Biochem. Cell Biol. 35 , 590–605. · DOI
  51. Worthylake, R., Opresko, L. K., and Wiley, H. S. (1999). ErbB-2 amplification inhibits down-regulation and induces constitutive activation of both ErbB-2 and epidermal growth factor receptors. J. Biol. Chem. 274 , 8865–8874. · DOI
  52. Wu, X., Yen, L., Irwin, L., Sweeney, C., and Carraway Spaceiiiqq, K. L. (2004). Stabilization of the E3 ubiquitin ligase Nrdp1 by the deubiquitinating enzyme USP8. Mol. Cell. Biol. 24 , 7748–7757. · DOI · Paper page
  53. Yao, T., and Cohen, R. E. (2002). A cryptic protease couples deubiquitination and degradation by the proteasome. Nature 419 , 403–407. · DOI
  54. 10.1091/mbc.11.2.747 · DOI

Cited by

Sorted by citations

Metadata

Authors
Mizuno, E., Iura, T., Mukai, A., Yoshimori, T., Kitamura, N., & Komada, M.
Venue
Molecular Biology of the Cell
Published
2005-11
Volume
16
Issue
11
Pages
5163-5174
ISSN
  • 1059-1524
  • 1939-4586
Cited by
248
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review