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Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens

Patzold, Franziska, Zilli, Alberto, Hundsdoerfer, Anna K.·2020·PLOS ONE
DOI 10.1371/journal.pone.0235222PMC PMC7343169
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Fig 1 Distribution of the total extracted DNA from the three kits. (A) samples extracted with the DNeasy extraction Kit (Qiagen); dots in green are the samples extracted using the innuPREP DNA Mini Kit (Analytik Jena), and the dots in magenta are samples extracted with the Monarch® PCR & DNA Clean-up Kit (New England Biolabs). A trend line was included for each protocol for visualisation of overall distribution.
Fig 1 Distribution of the total extracted DNA from the three kits. (A) samples extracted with the DNeasy extraction Kit (Qiagen); dots in green are the samples extracted using the innuPREP DNA Mini Kit (Analytik Jena), and the dots in magenta are samples extracted with the Monarch® PCR & DNA Clean-up Kit (New England Biolabs). A trend line was included for each protocol for visualisation of overall distribution.CC BY · PubMed Central
Fig 2 Comparison of total amounts of DNA extracted using the two protocols for the same individuals. The T-test was used to compare the means of the two protocols (*** p < 0.001).
Fig 2 Comparison of total amounts of DNA extracted using the two protocols for the same individuals. The T-test was used to compare the means of the two protocols (*** p < 0.001).CC BY · PubMed Central
Fig 3 Comparison of fragment sizes between two protocols from three specimens. Electropherograms from the DNeasy extraction Kit (blue) and the Monarch PCR & DNA Clean-up Kit (red). The specimens individual MTD-TW numbers are as follows: A 9248, B 9252, C 9251. See Supplementary Table 1 for more details on the DNA yield from each extraction.
Fig 3 Comparison of fragment sizes between two protocols from three specimens. Electropherograms from the DNeasy extraction Kit (blue) and the Monarch PCR & DNA Clean-up Kit (red). The specimens individual MTD-TW numbers are as follows: A 9248, B 9252, C 9251. See Supplementary Table 1 for more details on the DNA yield from each extraction.CC BY · PubMed Central
Fig 4 Lecto- and paralectotype specimens of Hyles livornica before (A, B, C) and after (a, b, c) sampling and extraction. Specimens were handled with cleaned forceps in the collection rooms. Treatment and reattachment of one leg each (middle leg). The specimens’ individual MTD-TW numbers are: A/a 12624, B/b 12625, C/c 12626 (S1 Table).
Fig 4 Lecto- and paralectotype specimens of Hyles livornica before (A, B, C) and after (a, b, c) sampling and extraction. Specimens were handled with cleaned forceps in the collection rooms. Treatment and reattachment of one leg each (middle leg). The specimens’ individual MTD-TW numbers are: A/a 12624, B/b 12625, C/c 12626 (S1 Table).CC BY · PubMed Central
Fig 5 Raw read composition, showing the percentage of adapter content (A) and percentage of duplicates (B). Both Reads (R1 and R2) are shown for each sample.
Fig 5 Raw read composition, showing the percentage of adapter content (A) and percentage of duplicates (B). Both Reads (R1 and R2) are shown for each sample.CC BY · PubMed Central
Fig 6 Percentage of endogenous DNA content of sequenced whole genome shotgun libraries. Sample age and species are added to the specimens MTD-TW number. Age is estimated in samples marked with * (see also S3 Table).
Fig 6 Percentage of endogenous DNA content of sequenced whole genome shotgun libraries. Sample age and species are added to the specimens MTD-TW number. Age is estimated in samples marked with * (see also S3 Table).CC BY · PubMed Central
Fig 7 Coverage breadth and depth of the Hyles vespertilio lectotype (MTD-TW 12623) sequences along the mitochondrial reference genome of the same species (ZITAT). Coverage depth is scaled to a max depth of 100 to enable visibility of coverage depth <100X. The inner circle shows the coverage breadth and depth for this sample. The outer circle shows the mitochondrial reference genome with the annotated diagnostic subunits of the cytochrome oxidase subunits (COI and COII, green) and tRNALeu (trnL2, blue).
Fig 7 Coverage breadth and depth of the Hyles vespertilio lectotype (MTD-TW 12623) sequences along the mitochondrial reference genome of the same species (ZITAT). Coverage depth is scaled to a max depth of 100 to enable visibility of coverage depth <100X. The inner circle shows the coverage breadth and depth for this sample. The outer circle shows the mitochondrial reference genome with the annotated diagnostic subunits of the cytochrome oxidase subunits (COI and COII, green) and tRNALeu (trnL2, blue).CC BY · PubMed Central
Fig 8 Phylogenetic tree based on the 2,306 bp multi sequence alignment of 43 sequences. The reconstruction is based on sequence data comprising the cytochrome oxidase subunits COI and COII and the intermediate tRNALeu (trnL2) gene fragments. If the reverse complementary sequences were used for the alignment, they were marked with (R).
Fig 8 Phylogenetic tree based on the 2,306 bp multi sequence alignment of 43 sequences. The reconstruction is based on sequence data comprising the cytochrome oxidase subunits COI and COII and the intermediate tRNALeu (trnL2) gene fragments. If the reverse complementary sequences were used for the alignment, they were marked with (R).CC BY · PubMed Central

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Research works printed but not linked: 106

  1. M Hofreiter, 2015, The future of ancient DNA: Technical advances and conceptual shifts, BioEssays, 37, 284, 10.1002/bies.201400160 · DOI
  2. MTP Gilbert, 2007, DNA extraction from dry museum beetles without conferring external morphological damage, PLoS One, 2, e272, 10.1371/journal.pone.0000272 · DOI
  3. AK Hundsdoerfer, 2017, Museum archives revisited: Central Asiatic hawkmoths reveal exceptionally high late Pliocene species diversification (Lepidoptera, Sphingidae), Zool Scr, 46, 552, 10.1111/zsc.12235 · DOI
  4. MB Mende, 2013, Mitochondrial lineage sorting in action—Historical biogeography of the Hyles euphorbiae complex (Sphingidae, Lepidoptera) in Italy, BMC Evol Biol, 13, 83, 10.1186/1471-2148-13-83 · DOI
  5. ML Blaxter, 2004, The promise of a DNA taxonomy, Philos Trans R Soc B Biol Sci, 359, 669, 10.1098/rstb.2003.1447 · DOI
  6. A V Suarez, 2006, The Value of Museum Collections for Research and Society, Bioscience, 54, 66, 10.1641/0006-3568(2004)054[0066:TVOMCF]2.0.CO;2 · DOI
  7. AK Monfils, 2017, Natural History Collections: Teaching about Biodiversity Across Time, Space, and Digital Platforms, Southeast Nat, 16, 47, 10.1656/058.016.0sp1008 · DOI
  8. V Dincă, 2018, Use of genetic, climatic, and microbiological data to inform reintroduction of a regionally extinct butterfly, Conserv Biol, 32, 828, 10.1111/cobi.13111 · DOI
  9. N Nakahama, 2018, Recent transitions in genetic diversity and structure in the endangered semi-natural grassland butterfly, Melitaea protomedia, in Japan, Insect Conserv Divers, 11, 330, 10.1111/icad.12280 · DOI
  10. N Keyghobadi, 2013, Historical specimens reveal past relationships and current conservation status of populations in a declining species: The regal fritillary butterfly, Insect Conserv Divers, 6, 234, 10.1111/j.1752-4598.2012.00208.x · DOI
  11. EM Golenberg, 1996, Effect of highly fragmented DNA on PCR, Nucleic Acids Res, 24, 5026, 10.1093/nar/24.24.5026 · DOI
  12. M Hofreiter, 2001, Ancient DNA, Nat Rev Genet, 2, 353, 10.1038/35072071 · DOI · Paper page
  13. T Lindahl, 1993, Instability and decay of the primary structure of DNA, Nature, 362, 709, 10.1038/362709a0 · DOI · Paper page
  14. M Mandrioli, 2008, Insect collections and DNA analyses: How to manage collections?, Museum Manag Curatorsh, 23, 193, 10.1080/09647770802012375 · DOI
  15. PF Thomsen, 2009, Non-Destructive Sampling of Ancient Insect DNA, PLoS One, 4, e5048, 10.1371/journal.pone.0005048 · DOI
  16. J Cadet, 2012, Photoinduced damage to cellular DNA: Direct and photosensitized reactions, Photochem Photobiol, 88, 1048, 10.1111/j.1751-1097.2012.01200.x · DOI · Paper page
  17. M Mandrioli, 2006, Factors affecting DNA preservation from museum-collected lepidopteran specimens, Entomol Exp Appl, 120, 239, 10.1111/j.1570-7458.2006.00451.x · DOI
  18. HC Dessauer, 1996, Molecular systematics, 229
  19. DLJ Quicke, 1999, Preservation of hymenopteran specimens for subsequent molecular and morphological study, Zool Scr, 28, 261, 10.1046/j.1463-6409.1999.00004.x · DOI
  20. AJ Phillips, 1995, Simple, efficient, and nondestructive DNA extraction protocol for Arthropods, Ann Entomol Soc Am, 88, 281, 10.1093/aesa/88.3.281 · DOI
  21. M Espeland, 2010, Dichlorvos exposure impedes extraction and amplification of DNA from insects in museum collections, Front Zool, 7, 1, 10.1186/1742-9994-7-2 · DOI
  22. J Zimmermann, 2008, DNA damage in preserved specimens and tissue samples: A molecular assessment, Front Zool, 5, 1, 10.1186/1742-9994-5-18 · DOI
  23. B Shapiro, 2012, Ancient DNA, 10.1007/978-1-61779-516-9 · DOI
  24. P Wandeler, 2007, Back to the future: museum specimens in population genetics, Trends Ecol Evol, 22, 634, 10.1016/j.tree.2007.08.017 · DOI
  25. MM Tin, 2014, Sequencing degraded DNA from non-destructively sampled museum specimens for RAD-tagging and low-coverage shotgun Phylogenetics, PLoS One, 9, e96793, 10.1371/journal.pone.0096793 · DOI
  26. T Suchan, 2016, Hybridization capture using RAD probes (hyRAD), a new tool for performing genomic analyses on collection specimens, PLoS One, 11, 1, 10.1371/journal.pone.0151651 · DOI
  27. M Meyer, 2010, Illumina sequencing library preparation for highly multiplexed target capture and sequencing, Cold Spring Harb Protoc, 5
  28. DE Wood, 2019, Improved metagenomic analysis with Kraken 2, bioRxiv, 762302
  29. M Pippel, 2020, A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae), Gigascience, 20
  30. FJ Sedlazeck, 2013, NextGenMap: Fast and accurate read mapping in highly polymorphic genomes, Bioinformatics, 29, 2790, 10.1093/bioinformatics/btt468 · DOI
  31. H Li, 2009, The Sequence Alignment/Map format and SAMtools, Bioinformatics, 25, 2078, 10.1093/bioinformatics/btp352 · DOI · Paper page
  32. AR Quinlan, 2010, BEDTools: A flexible suite of utilities for comparing genomic features, Bioinformatics, 26, 841, 10.1093/bioinformatics/btq033 · DOI · Paper page
  33. M Bernt, 2013, MITOS: Improved de novo metazoan mitochondrial genome annotation, Mol Phylogenet Evol, 69, 313, 10.1016/j.ympev.2012.08.023 · DOI
  34. AK Hundsdoerfer, 2017, Historic DNA for taxonomy and conservation: A case-study of a century-old hawaiian hawkmoth type (Lepidoptera: Sphingidae), PLoS One, 12, e0173255, 10.1371/journal.pone.0173255 · DOI
  35. H Li, 2011, A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data, Bioinformatics, 27, 2987, 10.1093/bioinformatics/btr509 · DOI
  36. K Katoh, 2018, MAFFT online service: Multiple sequence alignment, interactive sequence choice and visualization, Brief Bioinform, 20, 1160, 10.1093/bib/bbx108 · DOI · Paper page
  37. R Lanfear, 2016, Partitionfinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses, Mol Biol Evol, 34, 772
  38. R Lanfear, 2012, PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses, Mol Biol Evol, 29, 1695, 10.1093/molbev/mss020 · DOI · Paper page
  39. S Guindon, 2010, New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0, Syst Biol, 59, 307, 10.1093/sysbio/syq010 · DOI · Paper page
  40. LT Nguyen, 2015, IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies, Mol Biol Evol, 32, 268, 10.1093/molbev/msu300 · DOI · Paper page
  41. MR Jones, 2016, Targeted capture in evolutionary and ecological genomics, 40, 1291
  42. J Dabney, 2013, Ancient DNA damage, Cold Spring Harb Perspect Biol, 5, a012567, 10.1101/cshperspect.a012567 · DOI · Paper page
  43. N Rohland, 2018, Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing, Nat Protoc, 13, 2447, 10.1038/s41596-018-0050-5 · DOI
  44. P Strutzenberger, 2012, DNA barcode sequencing from old type specimens as a Tool in Taxonomy: A case study in the diverse genus Eois (Lepidoptera: Geometridae), PLoS One, 7, e49710, 10.1371/journal.pone.0049710 · DOI
  45. CA Lopez-vaamonde, 2012, Analysis of tissue dependent DNA yield for optimal sampling of micro-moths in large-scale biodiversity surveys, 5759, 1
  46. S Knölke, 2005, A procedure for combined genitalia dissection and DNA extraction in Lepidoptera, Insect Syst Evol, 35, 401, 10.1163/187631204788912463 · DOI
  47. M Bauer, 2002, Observed and simulated temperature-humidity relationships: Sensitivity to sampling and analysis, J Clim, 15, 203, 10.1175/1520-0442(2002)015<0203:OASTHR>2.0.CO;2 · DOI
  48. R Alaeddini, 2010, Molecular studies of time-and environment-dependent effects on bone DNA survival, Aust J Forensic Sci, 42, 211, 10.1080/00450611003758264 · DOI
  49. Abadzic S, Arthur J, Barudanovic, Senka Buturovic D, Calas JM, Colombini A, Dautbegovic, Jozefina Dembski G, et al. Proceedings of the International Congress Catastrophes and Catastrophe Management in Museums. Mader S, editor. Sarajevo: Tiroler Landesmuseum; 2005.
  50. M Dean, 2001, Factors affecting mitochondrial DNA quality from museum preserved Drosophila simulans, Entomol Exp Appl, 279, 10.1046/j.1570-7458.2001.00784.x · DOI · Paper page
  51. J Dabney, 2012, Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries, Biotechniques, 52, 87, 10.2144/000113809 · DOI · Paper page
  52. S Pääbo, 1989, Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification, Proc Natl Acad Sci U S A, 86, 1939, 10.1073/pnas.86.6.1939 · DOI
  53. G Besnard, 2016, Valuing museum specimens: High-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura), Biol J Linn Soc, 117, 71, 10.1111/bij.12494 · DOI
  54. Zinke GG. Die Kunst allerhand natürliche Körper zu sammeln, selbige auf eine leichte Art für das Kabinett zuzubereiten und sie vor der Zerstörung feindlicher Insekten zu sichern. Jena: Im Verlag des Hof-Buchdrucker Göpferdts; 1802. https://doi.org/10.5962/bhl.title.137028 · DOI
  55. Naumann JF. Taxidermie oder die Lehre Thiere aller Klassen am einfachsten und zeckmäßigsten für Kabinette auszustopfen und aufzubewahren. Halle: bei Hemmerde und Schwetschke; 1815. https://doi.org/10.5962/bhl.title.43737 · DOI
  56. Brehm CL. Die Kunst, Vögel als Bälge zu bereiten, auszustopfen, aufzustellen und aufzubewahren.–Nebst einer kurzen Anleitung, Schmetterlinge und Käfer zu fangen, zu präparieren, aufzustellen und aufzubewahren. Weimar: Verlag und Druck von Bernhard Friedrich Voigt; 1842. https://doi.org/10.5962/bhl.title.44880 · DOI
  57. Vogt. [Zur Tötung der Insekten …]. Int Entomol Zeitschrift. 1911;5: 67. Available: https://www.biodiversitylibrary.org/page/37070153#page/87/mode/1up
  58. RJ Post, 1993, Methods for the preservation of insects for DNA studies, Biochem Syst Ecol, 21, 85, 10.1016/0305-1978(93)90012-G · DOI
  59. MJ Scoble, 1992, Form, function and diversity
  60. Kristensen N. Lepidoptera, Moths and Butterflies: Morphology, Physiology, and Development: Teilband (Vol. 2). de Gruyter. 2003. https://doi.org/10.1515/9783110893724 · DOI
  61. Q Zhang, 2018, Fossil scales illuminate the early evolution of lepidopterans and structural colors, Sci Adv, 4, e1700988, 10.1126/sciadv.1700988 · DOI
  62. P Pirih, 2018, Classical lepidopteran wing scale colouration in the giant butterfly-moth Paysandisia archon, PeerJ, 6, e4590, 10.7717/peerj.4590 · DOI
  63. DL Rowley, 2007, Vouchering DNA-barcoded specimens: Test of a nondestructive extraction protocol for terrestrial Arthropods, Mol Ecol Notes, 7, 915, 10.1111/j.1471-8286.2007.01905.x · DOI
  64. AK Hundsdoerfer, 2010, A method for improving DNA yield from century-plus old specimens of large lepidoptera while minimizing damage to external and internal abdominal characters, Arthropod Syst Phylogeny, 68, 151, 10.3897/asp.68.e31721 · DOI
  65. V Nazari, 2016, Century-old DNA barcodes reveal phylogenetic placement of the extinct jamaican sunset moth, Urania sloanus Cramer (Lepidoptera: Uraniidae), PLoS One, 11, e0164405, 10.1371/journal.pone.0164405 · DOI
  66. PDN Hebert, 2003, Biological identifications through DNA barcodes, Proc R Soc B Biol Sci, 270, 313, 10.1098/rspb.2002.2218 · DOI · Paper page
  67. N V Ivanova, 2006, An inexpensive, automation-friendly protocol for recovering high-quality DNA, Mol Ecol Notes, 6, 998, 10.1111/j.1471-8286.2006.01428.x · DOI
  68. JH Skevington, 2007, DNA barcoding: Mixed results for big-headed flies (Diptera: Pipunculidae), Zootaxa, 26, 1, 10.11646/zootaxa.1423.1.1 · DOI
  69. PT Starks, 2002, Semi-nondestructive genetic sampling from live eusocial wasps, Polistes dominulus and Polistes fuscatus, Insectes Soc, 49, 20, 10.1007/s00040-002-8272-4 · DOI
  70. MJ Scoble, 1990, Moth-like butterflies (Hedylidae: Lepidoptera): A summary, with comments on the egg, J Nat Hist, 24, 159, 10.1080/00222939000770101 · DOI
  71. J Zhang, 2019, Three new subfamilies of skipper butterflies (Lepidoptera, Hesperiidae), ZooKeys, 2019, 91, 10.3897/zookeys.861.34686 · DOI
  72. SWJ Prosser, 2016, DNA barcodes from century-old type specimens using next-generation sequencing, Mol Ecol Resour, 16, 487, 10.1111/1755-0998.12474 · DOI
  73. A Hausmann, 2016, Calibrating the taxonomy of a megadiverse insect family: 3000 DNA barcodes from geometrid type specimens (Lepidoptera, Geometridae)s, Genome, 59, 671, 10.1139/gen-2015-0197 · DOI
  74. AS Shere-Kharwar, 2013, Moth Legs: Excellent source of tissue for DNA extraction (Lepidoptera: Noctuidae), Indian J Life Sci, 2, 35
  75. W Speidel, 2015, Taxonomy 2.0: Sequencing of old type specimens supports the description of two new species of the Lasiocampa decolorata group from Morocco (Lepidoptera, Lasiocampidae), Zootaxa, 39993, 401, 10.11646/zootaxa.3999.3.5 · DOI
  76. A Hausmann, 2009, Revision of the Australian Oenochroma vinaria Guenée, 1858 species-complex (Lepidoptera: Geometridae, Oenochrominae): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection, Zootaxa, 21, 1, 10.11646/zootaxa.2239.1.1 · DOI
  77. R Rougerie, 2012, Morphology and molecules reveal unexpected cryptic diversity in the enigmatic genus Sinobirma Bryk, 1944 (Lepidoptera: Saturniidae), PLoS One, 7, e43920, 10.1371/journal.pone.0043920 · DOI
  78. ML Carpenter, 2013, Pulling out the 1%: Whole-Genome capture for the targeted enrichment of ancient dna sequencing libraries, Am J Hum Genet, 93, 852, 10.1016/j.ajhg.2013.10.002 · DOI
  79. MC Ávila-Arcos, 2015, Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries, Methods Ecol Evol, 6, 725, 10.1111/2041-210X.12353 · DOI
  80. M Staats, 2013, Genomic treasure troves: complete genome sequencing of herbarium and insect museum specimens, PLoS One, 8, e69189, 10.1371/journal.pone.0069189 · DOI
  81. KC Rowe, 2011, Museum genomics: Low-cost and high-accuracy genetic data from historical specimens, Mol Ecol Resour, 11, 1082, 10.1111/j.1755-0998.2011.03052.x · DOI
  82. CM Hung, 2013, The de novo assembly of mitochondrial genomes of the extinct passenger pigeon (Ectopistes migratorius) with next generation sequencing, PLoS One, 8, e56301, 10.1371/journal.pone.0056301 · DOI
  83. AS Burrell, 2015, The use of museum specimens with high-throughput DNA sequencers, Danc Music Man, 2014, 179
  84. W Miller, 2009, The mitochondrial genome sequence of the Tasmanian tiger [Thylacinus cynocephalus], Genome Res, 19, 213, 10.1101/gr.082628.108 · DOI
  85. W Miller, 2008, Sequencing the nuclear genome of the extinct woolly mammoth, Nature, 456, 387, 10.1038/nature07446 · DOI
  86. HN Poinar, 2008, Metagenomics to Paleogenomics, 392, 392
  87. CJ Edwards, 2010, A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius), PLoS One, 5, e9255, 10.1371/journal.pone.0009255 · DOI
  88. K Bi, 2013, Unlocking the vault: Next-generation museum population genomics, Mol Ecol, 22, 6018, 10.1111/mec.12516 · DOI
  89. BR Menzies, 2012, Limited genetic diversity preceded extinction of the Tasmanian tiger, PLoS One, 7, e35433, 10.1371/journal.pone.0035433 · DOI
  90. Q Cong, 2019, Genomics reveals the origins of ancient specimens, bioRxiv, 752121
  91. J Zhang, 2020, The mitogenome of a malagasy butterfly Malaza fastuosus (Mabille, 1884) recovered from the holotype collected over 140 years ago adds support for a new subfamily of Hesperiidae (lepidoptera), Genome, 63, 195, 10.1139/gen-2019-0189 · DOI
  92. JF Hoyal Cuthill, 2019, Deep learning on butterfly phenotypes tests evolution’s oldest mathematical model, Sci Adv, 5
  93. HM Wood, 2018, Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea), Mol Phylogenet Evol, 127, 907, 10.1016/j.ympev.2018.06.038 · DOI
  94. TR Gregory, 2003, Genome size variation in lepidopteran insects, Can J Zool, 81, 1399, 10.1139/z03-126 · DOI
  95. J Shen, 2017, Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers, Curr Genomics, 18, 366, 10.2174/1389202918666170426113315 · DOI
  96. Z Li, 2018, Linkage disequilibrium clustering-based approach for association mapping with tightly linked genomewide data, Mol Ecol Resour, 18, 809, 10.1111/1755-0998.12893 · DOI
  97. M Schubert, 2014, Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX, Nat Protoc, 9, 1056, 10.1038/nprot.2014.063 · DOI · Paper page
  98. Z Zhao, 2010, Features of recent codon evolution: A comparative polymorphism-fixation study, J Biomed Biotechnol, 2010, 202918, 10.1155/2010/202918 · DOI
  99. L Bofkin, 2007, Variation in evolutionary processes at different codon positions, Mol Biol Evol, 24, 513, 10.1093/molbev/msl178 · DOI
  100. DL Guan, 2019, Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates, Sci Rep, 9, 678, 10.1038/s41598-018-35760-2 · DOI
  101. JSM Sabir, 2019, Molecular evolution of cytochrome C oxidase-I protein of insects living in Saudi Arabia, PLoS One, 14, e0224336, 10.1371/journal.pone.0224336 · DOI
  102. IJ Kitching, 2000, Hawkmoths of the World: An Annotated and Illustrated Revisionary Checklist
  103. AK Hundsdoerfer, 2009, A revised molecular phylogeny of the globally distributed hawkmoth genus Hyles (Lepidoptera: Sphingidae), based on mitochondrial and nuclear DNA sequences, Mol Phylogenet Evol, 52, 852, 10.1016/j.ympev.2009.05.023 · DOI
  104. JJ de Freina, 2014, Beitrag zur Hyles centralasiae-siehei-Artengruppe. Zur Biologie, Okologie, Verbreitung und geographischen Variabilität von H. siehei (Püngeler, 1903) und Reinterpretation von Hyles svetlana Shovkoon, 2010 (Lepidoptera: Sphingidae), Ent Z, 124, 67
  105. DF Shovkoon, 2010, A new subspecies of Hyles siehei (Püngeler) from the deserts of Central Asia (Sphingidae), Nota Lepidopterol, 33, 67
  106. RS Schwartz, 2010, Branch length estimation and divergence dating: Estimates of error in Bayesian and maximum likelihood frameworks, BMC Evol Biol, 10

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Metadata

Authors
Patzold, F., Zilli, A., & Hundsdoerfer, A. K.
ORCID
Patzold, Franziska
Venue
PLOS ONE
Publisher
Public Library of Science (PLoS)
Published
2020-07-08
Volume
15
Issue
7
Pages
e0235222
ISSN
1932-6203
DOI
10.1371/journal.pone.0235222
PMC
PMC7343169
Cited by
36
References
4
Language
en
Licence
creativecommons.org/licenses/by/4.0/ (vor)
Funders
Deutsche Forschungsgemeinschaft (HU 1561/5-1)

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Patzold, F., Zilli, A., & Hundsdoerfer, A. K. (2020). Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens. PLOS ONE. https://doi.org/10.1371/journal.pone.0235222