The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
Oxidative stress‐induced phosphorylation of JIP4 regulates lysosomal positioning in coordination with TRPML1 and ALG2
Abstract
Retrograde transport of lysosomes is recognised as a critical autophagy regulator. Here, we found that acrolein, an aldehyde that is significantly elevated in Parkinson's disease patient serum, enhances autophagy by promoting lysosomal clustering around the microtubule organising centre via a newly identified JIP4‐TRPML1‐ALG2 pathway. Phosphorylation of JIP4 at T217 by CaMK2G in response to Ca 2+ fluxes tightly regulated this system. Increased vulnerability of JIP4 KO cells to acrolein indicated that lysosomal clustering and subsequent autophagy activation served as defence mechanisms against cytotoxicity of acrolein itself. Furthermore, the JIP4‐TRPML1‐ALG2 pathway was also activated by H 2 O 2 , indicating that this system acts as a broad mechanism of the oxidative stress response. Conversely, starvation‐induced lysosomal retrograde transport involved both the TMEM55B‐JIP4 and TRPML1‐ALG2 pathways in the absence of the JIP4 phosphorylation. Therefore, the phosphorylation status of JIP4 acts as a switch that controls the signalling pathways of lysosoma l distribution depending on the type of autophagy‐inducing signal.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“JIP4-mediated retrograde transport of lysosomes facilitates interaction and fusion between autophagosomes and lysosomes, resulting in degradation of autophagosomal content and restoration of energy homeostasis7–9.”
From TMEM55B links autophagy flux, lysosomal repair, and TFE3 activation in response to oxidative stress (2024) · cites this paper as [9]
Experimental — accuracy not yet measuredThe cited source says what the claim attributes to it.
In the citing paper
“This may be explained by recent observations showing that JIP4 phosphorylation following oxidative stress induces its interaction with the TRPML1/ALG2 complex, which also mediates dynein-dependent retrograde transport of lysosomes9,38,39.”
From TMEM55B links autophagy flux, lysosomal repair, and TFE3 activation in response to oxidative stress (2024) · cites this paper as [9]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Comprehensive analysis of kinase inhibitor selectivity
Davis, M. I., Hunt, J. P., Herrgard, S., Ciceri, P., Wodicka, L. M., Pallares, G., Hocker, M., Treiber, D. K., & Zarrinkar, P. P. (2011) · Nature Biotechnology · doi:10.1038/nbt.1990 · Cited by 2,409 · cited 1×
“By profiling the activity of 178 commercially available kinase inhibitors against a panel of 300 recombinant protein kinases, a previous report revealed the identity of off-target effects (Davis et al , 2011).”
Immunohistochemical detection of 4-hydroxynonenal protein adducts in Parkinson disease.
Yoritaka, A., Hattori, N., Uchida, K., Tanaka, M., Stadtman, E. R., & Mizuno, Y. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.7.2696 · Cited by 981
Self-citationThe lysosome as a cellular centre for signalling, metabolism and quality control
Lawrence, R. E., & Zoncu, R. (2019) · Nature Cell Biology · doi:10.1038/s41556-018-0244-7 · Cited by 920
MCOLN1 is a ROS sensor in lysosomes that regulates autophagy
Zhang, X., Cheng, X., Yu, L., Yang, J., Calvo, R., Patnaik, S., Hu, X., Gao, Q., Yang, M., Lawas, M., et al. (2016) · Nature Communications · doi:10.1038/ncomms12109 · Cited by 558
Johansson, M., Rocha, N., Zwart, W., Jordens, I., Janssen, L., Kuijl, C., Olkkonen, V. M., & Neefjes, J. (2007) · The Journal of Cell Biology · doi:10.1083/jcb.200606077 · Cited by 505
Small-molecule inhibitors of the AAA+ ATPase motor cytoplasmic dynein
Firestone, A. J., Weinger, J. S., Maldonado, M., Barlan, K., Langston, L. D., O’Donnell, M., Gelfand, V. I., Kapoor, T. M., & Chen, J. K. (2012) · Nature · doi:10.1038/nature10936 · Cited by 403
A molecular mechanism to regulate lysosome motility for lysosome positioning and tubulation
Li, X., Rydzewski, N., Hider, A., Zhang, X., Yang, J., Wang, W., Gao, Q., Cheng, X., & Xu, H. (2016) · Nature Cell Biology · doi:10.1038/ncb3324 · Cited by 387
Willett, R., Martina, J. A., Zewe, J. P., Wills, R., Hammond, G. R. V., & Puertollano, R. (2017) · Nature Communications · doi:10.1038/s41467-017-01871-z · Cited by 201
Dykes, S. S., Gray, A. L., Coleman, D. T., Saxena, M., Stephens, C. A., Carroll, J. L., Pruitt, K., & Cardelli, J. A. (2016) · Oncotarget · doi:10.18632/oncotarget.8832 · Cited by 69
Flagged first, then by citations
Research works printed but not linked: 51
- Abu‐Remaileh M, Wyant GA, Kim C, Laqtom NN, Abbasi M, Chan SH, Freinkman E, Sabatini DM (2017) Lysosomal metabolomics reveals V‐ATPase‐ and mTOR‐dependent regulation of amino acid efflux from lysosomes. Science 358: 807–813 · DOI
- Acosta G, Race N, Herr S, Fernandez J, Tang J, Rogers E, Shi R (2019) Acrolein‐mediated alpha‐synuclein pathology involvement in the early post‐injury pathogenesis of mild blast‐induced parkinsonian neurodegeneration. Mol Cell Neurosci 98: 140–154 · DOI
- Ambaw A, Zheng L, Tambe MA, Strathearn KE, Acosta G, Hubers SA, Liu F, Herr SA, Tang J, Truong A et al (2018) Acrolein‐mediated neuronal cell death and alpha‐synuclein aggregation: implications for Parkinson's disease. Mol Cell Neurosci 88: 70–82 · DOI
- Ballabio A, Bonifacino JS (2020) Lysosomes as dynamic regulators of cell and organismal homeostasis. Nat Rev Mol Cell Biol 21: 101–118 · DOI · Paper page
- Bautista DM, Jordt SE, Nikai T, Tsuruda PR, Read AJ, Poblete J, Yamoah EN, Basbaum AI, Julius D (2006) TRPA1 mediates the inflammatory actions of environmental irritants and proalgesic agents. Cell 124: 1269–1282 · DOI
- Braun AP, Schulman H (1995) The multifunctional calcium/calmodulin‐dependent protein kinase: from form to function. Annu Rev Physiol 57: 417–445 · DOI
- Cabukusta B, Neefjes J (2018) Mechanisms of lysosomal positioning and movement. Traffic 19: 761–769 · DOI
- Cai Q, Lu L, Tian JH, Zhu YB, Qiao H, Sheng ZH (2010) Snapin‐regulated late endosomal transport is critical for efficient autophagy‐lysosomal function in neurons. Neuron 68: 73–86 · DOI · Paper page
- Coultrap SJ, Bayer KU (2012) CaMKII regulation in information processing and storage. Trends Neurosci 35: 607–618 · DOI
- Dong XP, Shen D, Wang X, Dawson T, Li X, Zhang Q, Cheng X, Zhang Y, Weisman LS, Delling M et al (2010) PI(3,5)P(2) controls membrane trafficking by direct activation of mucolipin ca(2+) release channels in the endolysosome. Nat Commun 1: 38 · DOI
- Gowrishankar S, Wu Y, Ferguson SM (2017) Impaired JIP3‐dependent axonal lysosome transport promotes amyloid plaque pathology. J Cell Biol 216: 3291–3305 · DOI · Paper page
- Gupta VK, Scheunemann L, Eisenberg T, Mertel S, Bhukel A, Koemans TS, Kramer JM, Liu KS, Schroeder S, Stunnenberg HG et al (2013) Restoring polyamines protects from age‐induced memory impairment in an autophagy‐dependent manner. Nat Neurosci 16: 1453–1460 · DOI
- Hamann K, Shi R (2009) Acrolein scavenging: a potential novel mechanism of attenuating oxidative stress following spinal cord injury. J Neurochem 111: 1348–1356 · DOI
- Holbert CE, Dunworth M, Foley JR, Dunston TT, Stewart TM, Casero RA Jr (2020) Autophagy induction by exogenous polyamines is an artifact of bovine serum amine oxidase activity in culture serum. J Biol Chem 295: 9061–9068 · DOI
- Igarashi K, Kashiwagi K (2021) Functional roles of polyamines and their metabolite acrolein in eukaryotic cells. Amino Acids 53: 1473–1492 · DOI
- Jefferies HB, Cooke FT, Jat P, Boucheron C, Koizumi T, Hayakawa M, Kaizawa H, Ohishi T, Workman P, Waterfield MD et al (2008) A selective PIKfyve inhibitor blocks PtdIns(3,5)P(2) production and disrupts endomembrane transport and retroviral budding. EMBO Rep 9: 164–170 · DOI
- Jiang C, Jiang L, Li Q, Liu X, Zhang T, Dong L, Liu T, Liu L, Hu G, Sun X et al (2018) Acrolein induces NLRP3 inflammasome‐mediated pyroptosis and suppresses migration via ROS‐dependent autophagy in vascular endothelial cells. Toxicology 410: 26–40 · DOI
- Jiang L, Luo S, Qiu T, Li Q, Jiang C, Sun X, Yang G, Zhang C, Liu X, Jiang L (2021) Bidirectional role of reactive oxygen species during inflammasome activation in acrolein‐induced human EAhy926 cells pyroptosis. Toxicol Mech Methods 31: 680–689 · DOI
- Kabeya Y, Mizushima N, Ueno T, Yamamoto A, Kirisako T, Noda T, Kominami E, Ohsumi Y, Yoshimori T (2000) LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J 19: 5720–5728 · DOI · Paper page
- Keren‐Kaplan T, Saric A, Ghosh S, Williamson CD, Jia R, Li Y, Bonifacino JS (2022) RUFY3 and RUFY4 are ARL8 effectors that promote coupling of endolysosomes to dynein‐dynactin. Nat Commun 13: 1506 · DOI · Paper page
- Kesisova IA, Robinson BP, Spiliotis ET (2021) A septin GTPase scaffold of dynein‐dynactin motors triggers retrograde lysosome transport. J Cell Biol 220: e202005219 · DOI
- Kimura S, Noda T, Yoshimori T (2008) Dynein‐dependent movement of autophagosomes mediates efficient encounters with lysosomes. Cell Struct Funct 33: 109–122 · DOI · Paper page
- Klionsky DJ, Petroni G, Amaravadi RK, Baehrecke EH, Ballabio A, Boya P, Bravo‐San Pedro JM, Cadwell K, Cecconi F, Choi AMK et al (2021) Autophagy in major human diseases. EMBO J 40: e108863 · DOI · Paper page
- Korolchuk VI, Saiki S, Lichtenberg M, Siddiqi FH, Roberts EA, Imarisio S, Jahreiss L, Sarkar S, Futter M, Menzies FM et al (2011) Lysosomal positioning coordinates cellular nutrient responses. Nat Cell Biol 13: 453–460 · DOI · Paper page
- Kumar G, Chawla P, Dhiman N, Chadha S, Sharma S, Sethi K, Sharma M, Tuli A (2022) RUFY3 links Arl8b and JIP4‐dynein complex to regulate lysosome size and positioning. Nat Commun 13: 1540 · DOI · Paper page
- Liu‐Snyder P, McNally H, Shi R, Borgens RB (2006) Acrolein‐mediated mechanisms of neuronal death. J Neurosci Res 84: 209–218 · DOI
- Luo S, Jiang L, Li Q, Sun X, Liu T, Pei F, Zhang T, Liu T, Dong L, Liu X et al (2018) Acrolein‐induced autophagy‐dependent apoptosis via activation of the lysosomal‐mitochondrial pathway in EAhy926 cells. Toxicol In Vitro 52: 146–153 · DOI
- Macpherson IR, Rainero E, Mitchell LE, van den Berghe PV, Speirs C, Dozynkiewicz MA, Chaudhary S, Kalna G, Edwards J, Timpson P et al (2014) CLIC3 controls recycling of late endosomal MT1‐MMP and dictates invasion and metastasis in breast cancer. J Cell Sci 127: 3893–3901
- Marchesin V, Castro‐Castro A, Lodillinsky C, Castagnino A, Cyrta J, Bonsang‐Kitzis H, Fuhrmann L, Irondelle M, Infante E, Montagnac G et al (2015) ARF6‐JIP3/4 regulate endosomal tubules for MT1‐MMP exocytosis in cancer invasion. J Cell Biol 211: 339–358 · DOI · Paper page
- Martel J, Ojcius DM, Ko YF, Ke PY, Wu CY, Peng HH, Young JD (2019) Hormetic effects of phytochemicals on health and longevity. Trends Endocrinol Metab 30: 335–346 · DOI
- Minois N, Rockenfeller P, Smith TK, Carmona‐Gutierrez D (2014) Spermidine feeding decreases age‐related locomotor activity loss and induces changes in lipid composition. PLoS ONE 9: e102435 · DOI
- Mizushima N, Levine B (2020) Autophagy in human diseases. N Engl J Med 383: 1564–1576 · DOI · Paper page
- Nishimura Y, Itoh K, Yoshioka K, Tokuda K, Himeno M (2003) Overexpression of ROCK in human breast cancer cells: Evidence that ROCK activity mediates intracellular membrane traffic of lysosomes. Pathol Oncol Res 9: 83–95 · DOI · Paper page
- Nojima H, Tokunaga C, Eguchi S, Oshiro N, Hidayat S, Yoshino K, Hara K, Tanaka N, Avruch J, Yonezawa K (2003) The mammalian target of rapamycin (mTOR) partner, raptor, binds the mTOR substrates p70 S6 kinase and 4E‐BP1 through their TOR signaling (TOS) motif. J Biol Chem 278: 15461–15464 · DOI
- Paik MJ, Ahn YH, Lee PH, Kang H, Park CB, Choi S, Lee G (2010) Polyamine patterns in the cerebrospinal fluid of patients with Parkinson's disease and multiple system atrophy. Clin Chim Acta 411: 1532–1535 · DOI
- Park J, Muratori B, Shi R (2014) Acrolein as a novel therapeutic target for motor and sensory deficits in spinal cord injury. Neural Regen Res 9: 677–683 · DOI
- Raju SV, Jackson PL, Courville CA, McNicholas CM, Sloane PA, Sabbatini G, Tidwell S, Tang LP, Liu B, Fortenberry JA et al (2013) Cigarette smoke induces systemic defects in cystic fibrosis transmembrane conductance regulator function. Am J Respir Crit Care Med 188: 1321–1330 · DOI
- Rocha N, Kuijl C, van der Kant R, Janssen L, Houben D, Janssen H, Zwart W, Neefjes J (2009) Cholesterol sensor ORP1L contacts the ER protein VAP to control Rab7‐RILP‐p150 glued and late endosome positioning. J Cell Biol 185: 1209–1225 · DOI
- Roede JR, Uppal K, Park Y, Lee K, Tran V, Walker D, Strobel FH, Rhodes SL, Ritz B, Jones DP (2013) Serum metabolomics of slow vs. rapid motor progression Parkinson's disease: a pilot study. PLoS ONE 8: e77629 · DOI
- Saiki S, Hatano T, Fujimaki M, Ishikawa KI, Mori A, Oji Y, Okuzumi A, Fukuhara T, Koinuma T, Imamichi Y et al (2017) Decreased long‐chain acylcarnitines from insufficient beta‐oxidation as potential early diagnostic markers for Parkinson's disease. Sci Rep 7: 7328 · DOI
- Saiki S, Sasazawa Y, Fujimaki M, Kamagata K, Kaga N, Taka H, Li Y, Souma S, Hatano T, Imamichi Y et al (2019) A metabolic profile of polyamines in parkinson disease: a promising biomarker. Ann Neurol 86: 251–263 · DOI
- Saiki S, Sasazawa Y, Imamichi Y, Kawajiri S, Fujimaki T, Tanida I, Kobayashi H, Sato F, Sato S, Ishikawa K et al (2011) Caffeine induces apoptosis by enhancement of autophagy via PI3K/Akt/mTOR/p70S6K inhibition. Autophagy 7: 176–187 · DOI
- Sasazawa Y, Kanagaki S, Tashiro E, Nogawa T, Muroi M, Kondoh Y, Osada H, Imoto M (2012) Xanthohumol impairs autophagosome maturation through direct inhibition of valosin‐containing protein. ACS Chem Biol 7: 892–900 · DOI
- Sasazawa Y, Sato N, Umezawa K, Simizu S (2015) Conophylline protects cells in cellular models of neurodegenerative diseases by inducing mammalian target of rapamycin (mTOR)‐independent autophagy. J Biol Chem 290: 6168–6178 · DOI
- Schindelin J, Arganda‐Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B et al (2012) Fiji: an open‐source platform for biological‐image analysis. Nat Methods 9: 676–682 · DOI · Paper page
- Stevens JF, Maier CS (2008) Acrolein: sources, metabolism, and biomolecular interactions relevant to human health and disease. Mol Nutr Food Res 52: 7–25 · DOI
- Uchida K, Kanematsu M, Sakai K, Matsuda T, Hattori N, Mizuno Y, Suzuki D, Miyata T, Noguchi N, Niki E et al (1998) Protein‐bound acrolein: potential markers for oxidative stress. Proc Natl Acad Sci USA 95: 4882–4887 · DOI
- Vergarajauregui S, Martina JA, Puertollano R (2009) Identification of the penta‐EF‐hand protein ALG‐2 as a Ca2+−dependent interactor of mucolipin‐1. J Biol Chem 284: 36357–36366 · DOI · Paper page
- Wang YT, Lin HC, Zhao WZ, Huang HJ, Lo YL, Wang HT, Lin AM (2017) Acrolein acts as a neurotoxin in the nigrostriatal dopaminergic system of rat: involvement of alpha‐synuclein aggregation and programmed cell death. Sci Rep 7: 45741
- Yamasaki A, Tani K, Yamamoto A, Kitamura N, Komada M (2006) The Ca2+−binding protein ALG‐2 is recruited to endoplasmic reticulum exit sites by Sec31A and stabilizes the localization of Sec31A. Mol Biol Cell 17: 4876–4887 · DOI
- Yuzaki M (2010) Snapin snaps into the dynein complex for late endosome‐lysosome trafficking and autophagy. Neuron 68: 4–6 · DOI
Cited by
Sorted by citations
TMEM55B links autophagy flux, lysosomal repair, and TFE3 activation in response to oxidative stress
Jeong, E., Willett, R., Rissone, A., La Spina, M., & Puertollano, R. (2024) · Nature Communications · doi:10.1038/s41467-023-44316-6 · Cited by 25
Metadata
- Authors
- Sasazawa, Y., Souma, S., Furuya, N., Miura, Y., Kazuno, S., Kakuta, S., Suzuki, A., Hashimoto, R., Hirawake‐Mogi, H., Date, Y., Imoto, M., Ueno, T., Kataura, T., Korolchuk, V. I., Tsunemi, T., Hattori, N., & Saiki, S.
- Venue
- The EMBO Journal
- Published
- 2022-10-11
- Volume
- 41
- Issue
- 22
- ISSN
- 0261-4189
- 1460-2075
- PMC
- PMC9670204
- Cited by
- 31
- References
- 9
- Language
- en
- Funders
- Ministry of Education, Culture, Sports, Science and Technology (MEXT) ¦ Japan Society for the Promotion of Science (18KT0027, 18KK0242, 18H02744, 22H02986, 21K07425, 20H05340, 18K15464, 16H06276)
- Naito Foundation
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review