A dynamic model of photoadaptation in phytoplankton
Abstract
We present a new dynamic model that uses a small number of prescribed parameters to predict the chlorophyll a:carbon ratio and growth rate of phytoplankton in both constant and varying irradiance. The model provides a self‐contained description of energy and mass fluxes and regulation of partitioning of photosynthate during phytoplankton adaptation to irradiance. The kinetics and steady‐state outcomes of photoadaptation are described in terms of changes in the rates of synthesis of three intracellular carbon pools. These pools account for the distribution of cell material between light‐harvesting components, the biosynthetic apparatus, and energy storage compounds. Regulation of the flow of recent photosynthate to these pools is controlled by the ratio of realized to potential photosynthetic electron flow at a given instant. The responses of growth rate and Chl a:C to static and dynamic irradiance regimes can be adequately described by specifying four parameters: the initial slope of the photosynthesis‐irradiance curve, the maximum growth rate, the maximum Chl a:C observed under light limitation, and the maintenance metabolic rate. The model predictions compared favorably with observations of the diatoms Thalassiosira pseudonana and Phaedactylum tricornutum.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Temporal changes of the light distribution occur due to the evolution of cell density and the adaptation of the pigmentation and cell size, which determine the radiation characteristics of the cell culture.
“Temporal changes of the light distribution occur due to the evolution of cell density and the adaptation of the pigmentation and cell size [86,87], which determine the radiation characteristics of the cell culture [78,88-90].”
From Modeling and Simulation of Photobioreactors with Computational Fluid Dynamics—A Comprehensive Review (2022) · cites this paper as [86]
Cites
The Deep Chlorophyll Maximum: Comparing Vertical Profiles of Chlorophyll a
Cullen, J. J. (1982) · Canadian Journal of Fisheries and Aquatic Sciences · doi:10.1139/f82-108 · Cited by 873 · see citing works
Raven, J. A., & Geider, R. J. (1988) · New Phytologist · doi:10.1111/j.1469-8137.1988.tb00282.x · Cited by 771 · see citing works
Self-citationRIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE-OXYGENASE
Miziorko, H. M., & Lorimer, G. H. (1983) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.52.070183.002451 · Cited by 675 · see citing works
Escoubas, J.-M., Lomas, M. W., LaRoche, J., & Falkowski, P. G. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.22.10237 · Cited by 662 · see citing works
Growth‐irradiance relationships in phytoplankton1
Falkowski, P. G., Dubinsky, Z., & Wyman, K. D. (1985) · Limnology and Oceanography · doi:10.4319/lo.1985.30.2.0311 · Cited by 461 · see citing works
The kinetics of algal photoadaptation in the context of vertical mixing
Cullen, J. J., & Lewis, M. R. (1988) · Journal of Plankton Research · doi:10.1093/plankt/10.5.1039 · Cited by 297 · see citing works
Light-saturated photosynthesis — Limitation by electron transport or carbon fixation?
Sukenik, A., Bennett, J. C., & Falkowski, P. G. (1987) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/0005-2728(87)90216-7 · Cited by 296 · see citing works
A model of physiological adaptation in unicellular algae
Shuter, B. J. (1979) · Journal of Theoretical Biology · doi:10.1016/0022-5193(79)90189-9 · Cited by 275 · see citing works
Non-photochemical fluorescence quenching and the diadinoxanthin cycle in a marine diatom
Olaizola, M., LaRoche, J., Kolber, Z., & Falkowski, P. G. (1994) · Photosynthesis Research · doi:10.1007/bf00019413 · Cited by 260 · see citing works
A COST‐BENEFIT ANALYSIS OF PHOTON ABSORPTION BY PHOTOSYNTHETIC UNICELLS
Raven, J. A. (1984) · New Phytologist · doi:10.1111/j.1469-8137.1984.tb04152.x · Cited by 223 · see citing works
Photosynthesis-irradiance relationships in polar and temperate phytoplankton populations
Harrison, W. G., & Platt, T. (1986) · Polar Biology · doi:10.1007/bf00441695 · Cited by 222 · see citing works
Components of Bacterial Ribosomes
Wittmann, H. G. (1982) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.51.070182.001103 · Cited by 215 · see citing works
Langdon, C. (1988) · Journal of Plankton Research · doi:10.1093/plankt/10.6.1291 · Cited by 201 · see citing works
Night synthesis of protein by algae1
Cuhel, R. L., Ortner, P. B., & Lean, D. R. S. (1984) · Limnology and Oceanography · doi:10.4319/lo.1984.29.4.0731 · Cited by 190 · see citing works
Chloroplast ribosomes and protein synthesis
Harris, E. H., Boynton, J. E., & Gillham, N. W. (1994) · Microbiological Reviews · doi:10.1128/mr.58.4.700-754.1994 · Cited by 182 · see citing works
Sakshaug, E., Andresen, K., & Kiefer, D. A. (1989) · Limnology and Oceanography · doi:10.4319/lo.1989.34.1.0198 · Cited by 168 · see citing works
Light-Harvesting Function in the Diatom Phaeodactylum tricornutum
Owens, T. G., & Wold, E. R. (1986) · PLANT PHYSIOLOGY · doi:10.1104/pp.80.3.732 · Cited by 142 · see citing works
LIGHT DEPENDENCE OF GROWTH AND PHOTOSYNTHESIS IN PHAEODACTYLUM TRICORNUTUM (BACILLARIOPHYCEAE)1
Geider, R. J., Osborne, B. A., & Raven, J. A. (1985) · Journal of Phycology · doi:10.1111/j.0022-3646.1985.00609.x · Cited by 141 · see citing works
Self-citationLancelot, C., & Mathot, S. (1985) · Marine Biology · doi:10.1007/bf00397507 · Cited by 127 · see citing works
Kana, T. M., & Glibert, P. M. (1987) · Deep Sea Research Part A Oceanographic Research Papers · doi:10.1016/0198-0149(87)90002-1 · Cited by 122 · see citing works
Self-citationLi, W., Zohary, T., Yacobi, Y. Z., et al. (1993) · Marine Ecology Progress Series · doi:10.3354/meps095079 · Cited by 116 · see citing works
LaRoche, J., Mortain‐Bertrand, A., & Falkowski, P. G. (1991) · PLANT PHYSIOLOGY · doi:10.1104/pp.97.1.147 · Cited by 81 · see citing works
A Diatom Light-Harvesting Pigment-Protein Complex
Friedman, A. L., & Alberte, R. S. (1984) · PLANT PHYSIOLOGY · doi:10.1104/pp.76.2.483 · Cited by 81 · see citing works
The role of carbohydrate accumulation in the growth of planktonic Oscillatoria species
Foy, R. H., & Smith, R. V. (1980) · British Phycological Journal · doi:10.1080/00071618000650161 · Cited by 73 · see citing works
Orellana, M. V., & Perry, M. J. (1992) · Limnology and Oceanography · doi:10.4319/lo.1992.37.3.0478 · Cited by 69 · see citing works
Li, W. K. W., & Platt, T. (1982) · Journal of Phycology · doi:10.1111/j.1529-8817.1982.tb03211.x · Cited by 63 · see citing works
Subunit proteins of photosystem II
Ikeuchi, M. (1992) · Journal of Plant Research · doi:10.1007/bf02489425 · Cited by 60 · see citing works
A mechanistic model of photoadaptation in microalgae
Geider, R. J., & Piatt, T. (1986) · Marine Ecology Progress Series · doi:10.3354/meps030085 · Cited by 48 · see citing works
Self-citationVertical advection of phytoplankton and productivity estimates: a dimensional analysis
Gallegos, C. L., & Piatt, T. (1985) · Marine Ecology Progress Series · doi:10.3354/meps026125 · Cited by 48 · see citing works
A Lagrangian model of phytoplankton photosynthetic response in the upper mixed layer
Kamykowski, D. L., Yamazaki, H., & Janowitz, G. S. (1994) · Journal of Plankton Research · doi:10.1093/plankt/16.8.1059 · Cited by 43 · see citing works
Adaptations to fluctuating irradiance by natural phytoplankton communities1
Jones, R. I. (1978) · Limnology and Oceanography · doi:10.4319/lo.1978.23.5.0920 · Cited by 41 · see citing works
Vincent, W. F., Bertrand, N., & Frenette, J.-J. (1994) · Marine Ecology Progress Series · doi:10.3354/meps110283 · Cited by 33 · see citing works
Mortain‐Bertrand, A., Bennett, J. C., & Falkowski, P. G. (1990) · PLANT PHYSIOLOGY · doi:10.1104/pp.94.1.304 · Cited by 28 · see citing works
Laws, E. A., Redalje, D. G., Karl, D. M., et al. (1983) · Journal of Theoretical Biology · doi:10.1016/0022-5193(83)90188-1 · Cited by 28 · see citing works
Ernst, D., Apfelbock, A., Bergmann, A., et al. (1990) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1990.tb01751.x · Cited by 16 · see citing works
Richards, L., & Thurston, C. F. (1980) · Microbiology · doi:10.1099/00221287-121-1-49 · Cited by 13 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Redfield revisited: Variability of C:N: P in marine microalgae and its biochemical basis
Geider, R., & La Roche, J. (2002) · European Journal of Phycology · doi:10.1017/s0967026201003456 · Cited by 1,412 · see citing works
Self-citationBéchet, Q., Shilton, A., & Guieysse, B. (2013) · Biotechnology Advances · doi:10.1016/j.biotechadv.2013.08.014 · Cited by 430 · see citing works
Zahariev, K., Christian, J. R., & Denman, K. L. (2008) · Progress In Oceanography · doi:10.1016/j.pocean.2008.01.007 · Cited by 108 · see citing works
Blanken, W., Postma, P. R., de Winter, L., Wijffels, R. H., & Janssen, M. (2016) · Algal Research · doi:10.1016/j.algal.2015.12.020 · Cited by 99 · see citing works
Dean, A. P., Nicholson, J. M., & Sigee, D. C. (2008) · European Journal of Phycology · doi:10.1080/09670260801979287 · Cited by 81 · see citing works
KANA, T. M., GEIDER, R. J., & CRITCHLEY, C. (1997) · New Phytologist · doi:10.1046/j.1469-8137.1997.00857.x · Cited by 74 · see citing works
Self-citationWang, D., Lai, Y.-C., Karam, A. L., de los Reyes, F. L., & Ducoste, J. J. (2019) · Environmental Science & Technology · doi:10.1021/acs.est.9b02908 · Cited by 46 · see citing works
Modeling and Simulation of Photobioreactors with Computational Fluid Dynamics—A Comprehensive Review
Luzi, G., & McHardy, C. (2022) · Energies · doi:10.3390/en15113966 · Cited by 44 · see citing works
“Temporal changes of the light distribution occur due to the evolution of cell density and the adaptation of the pigmentation and cell size [86,87], which determine the radiation characteristics of the cell culture [78,88–90].”
BackgroundDean, A. P., & Sigee, D. C. (2006) · European Journal of Phycology · doi:10.1080/09670260600645907 · Cited by 41 · see citing works
- Authors
- Geider, R. J., MacIntyre, H. L., & Kana, T. M.
- Affiliations
- University of Delaware (US)
- Venue
- Limnology and Oceanography
- Publisher
- Wiley
- Published
- 1996-01
- Volume
- 41
- Issue
- 1
- Pages
- 1-15
- ISSN
- 0024-3590 (ISSN-L)
- 1939-5590
- OpenAlex
- W2161217444
- Cited by
- 320
- References
- 36
- Citations by year
- 2026: 7 · 2025: 8 · 2024: 6 · 2023: 10 · 2022: 17 · 2021: 5 · 2020: 11 · 2019: 13 · 2018: 11 · 2017: 8 · 2016: 10 · 2015: 17 · 2014: 18 · 2013: 18 · 2012: 10
- FWCI
- 8.32
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Limnology and Oceanography (publishedVersion)
- Funders
- National Science Foundation
- Topics
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine and coastal ecosystems
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Physical Sciences › Environmental Science › Environmental Chemistry › Aquatic Ecosystems and Phytoplankton Dynamics
- Keywords
- photoadaptation, phytoplankton, phytoplankton growth rate, irradiance, photosynthesis-irradiance curves, photosynthate partitioning, electron transport, Thalassiosira pseudonana, diatoms, dynamic model
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review