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Zinc shapes the folding landscape of p53 and establishes a pathway for reactivating structurally diverse cancer mutants

Blanden, Adam R, Yu, Xin, Blayney, Alan J, Demas, Christopher, Ha, Jeung-Hoi, Liu, Yue, Withers, Tracy, Carpizo, Darren R, Loh, Stewart N·2020·eLife

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Abstract

Missense mutations in the p53 DNA-binding domain (DBD) contribute to half of new cancer cases annually. Here we present a thermodynamic model that quantifies and links the major pathways by which mutations inactivate p53. We find that DBD possesses two unusual properties—one of the highest zinc affinities of any eukaryotic protein and extreme instability in the absence of zinc—which are predicted to poise p53 on the cusp of folding/unfolding in the cell, with a major determinant being available zinc concentration. We analyze the 20 most common tumorigenic p53 mutations and find that 80% impair zinc affinity, thermodynamic stability, or both. Biophysical, cell-based, and murine xenograft experiments demonstrate that a synthetic zinc metallochaperone rescues not only mutations that decrease zinc affinity, but also mutations that destabilize DBD without impairing zinc binding. The results suggest that zinc metallochaperones have the capability to treat 120,500 patients annually in the U.S.

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Research works printed but not linked: 44

  1. Baud, 2018, Aminobenzothiazole derivatives stabilize the thermolabile p53 Cancer mutant Y220C and show anticancer activity in p53-Y220C cell lines, European Journal of Medicinal Chemistry, 152, 101, 10.1016/j.ejmech.2018.04.035 · DOI
  2. Bauer, 2019, A structure-guided molecular chaperone approach for restoring the transcriptional activity of the p53 Cancer mutant Y220C, Future Medicinal Chemistry, 11, 2491, 10.4155/fmc-2019-0181 · DOI
  3. Baugh, 2018, Why are there hotspot mutations in the TP53 gene in human cancers?, Cell Death & Differentiation, 25, 154, 10.1038/cdd.2017.180 · DOI · Paper page
  4. Bell, 2002, p53 contains large unstructured regions in its native state, Journal of Molecular Biology, 322, 917, 10.1016/S0022-2836(02)00848-3 · DOI · Paper page
  5. Blanden, 2015, Reactivating mutant p53 using small molecules as zinc metallochaperones: awakening a sleeping giant in Cancer, Drug Discovery Today, 20, 1391, 10.1016/j.drudis.2015.07.006 · DOI
  6. Boeckler, 2008, Targeted rescue of a destabilized mutant of p53 by an in silico screened drug, PNAS, 105, 10360, 10.1073/pnas.0805326105 · DOI · Paper page
  7. Bouaoun, 2016, TP53 variations in human cancers: new lessons from the IARC TP53 database and genomics data, Human Mutation, 37, 865, 10.1002/humu.23035 · DOI · Paper page
  8. Bullock, 1997, Thermodynamic stability of wild-type and mutant p53 core domain, PNAS, 94, 14338, 10.1073/pnas.94.26.14338 · DOI · Paper page
  9. Bullock, 2000, Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in Cancer therapy, Oncogene, 19, 1245, 10.1038/sj.onc.1203434 · DOI · Paper page
  10. Butler, 2003, Structure, function, and aggregation of the zinc-free form of the p53 DNA binding domain, Biochemistry, 42, 2396, 10.1021/bi026635n · DOI · Paper page
  11. Butler, 2006, Folding and misfolding mechanisms of the p53 DNA binding domain at physiological temperature, Protein Science, 15, 2457, 10.1110/ps.062324206 · DOI
  12. Chandler, 2016, Subtype-specific accumulation of intracellular zinc pools is associated with the malignant phenotype in breast Cancer, Molecular Cancer, 15, 10.1186/s12943-015-0486-y · DOI
  13. Cuddihy, 2008, WTp53 induction does not override MTp53 chemoresistance and radioresistance due to gain-of-function in lung Cancer cells, Molecular Cancer Therapeutics, 7, 980, 10.1158/1535-7163.MCT-07-0471 · DOI
  14. Friedler, 2003, Kinetic instability of p53 core domain mutants, Journal of Biological Chemistry, 278, 24108, 10.1074/jbc.M302458200 · DOI · Paper page
  15. Garufi, 2013, A fluorescent curcumin-based zn(II)-complex reactivates mutant (R175H and R273H) p53 in Cancer cells, Journal of Experimental & Clinical Cancer Research, 32, 10.1186/1756-9966-32-72 · DOI
  16. Hainaut, 1993, A structural role for metal ions in the ‘wild-type’ conformation of the tumor suppressor protein p53, Cancer Research, 53, 1739
  17. Joerger, 2010, The tumor suppressor p53: from structures to drug discovery, Cold Spring Harbor Perspectives in Biology, 2, 10.1101/cshperspect.a000919 · DOI · Paper page
  18. Kochańczyk, 2015, Relationship between the architecture of zinc coordination and zinc binding affinity in proteins--insights into zinc regulation, Metallomics, 7, 244, 10.1039/C4MT00094C · DOI
  19. Krezel, 2006, Zinc-buffering capacity of a eukaryotic cell at physiological pZn, JBIC Journal of Biological Inorganic Chemistry, 11, 1049, 10.1007/s00775-006-0150-5 · DOI · Paper page
  20. Liu, 2013, Small molecule induced reactivation of mutant p53 in Cancer cells, Nucleic Acids Research, 41, 6034, 10.1093/nar/gkt305 · DOI · Paper page
  21. LOVD Gene homepage. 2018. Leiden University Medical Center. RB1 Homepage - Rb1-Lsdb - Leiden Open Variation Database. http://rb1-lovd.d-lohmann.de/home.php?select_db=RB1.
  22. Maret, 2017, Zinc in cellular regulation: the nature and significance of “Zinc Signals”, International Journal of Molecular Sciences, 18, 10.3390/ijms18112285 · DOI · Paper page
  23. Mehrian-Shai, 2015, High metallothionein predicts poor survival in glioblastoma multiforme, BMC Medical Genomics, 8, 10.1186/s12920-015-0137-6 · doi:10.1186/s12920-015-0137-6
  24. Méplan, 2000, Metalloregulation of the tumor suppressor protein p53: zinc mediates the renaturation of p53 after exposure to metal chelators in vitro and in intact cells, Oncogene, 19, 5227, 10.1038/sj.onc.1203907 · DOI · Paper page
  25. Milner, 1990, Addition of fresh medium induces cell cycle and conformation changes in p53, a tumour suppressor protein, Oncogene, 5, 1683
  26. Munson, 1988, An exact correction to the "Cheng-Prusoff" correction, Journal of Receptor Research, 8, 533, 10.3109/10799898809049010 · DOI
  27. Myers, 1995, Denaturant m values and heat capacity changes: relation to changes in accessible surface Areas of protein unfolding, Protein Science, 4, 2138, 10.1002/pro.5560041020 · DOI · Paper page
  28. Pace, 1975, The stability of globular proteins, CRC Critical Reviews in Biochemistry, 3, 1, 10.3109/10409237509102551 · DOI · Paper page
  29. Pace, 1999, Heat capacity change for ribonuclease A folding, Protein Science, 8, 1500, 10.1110/ps.8.7.1500 · doi:10.1110/ps.8.7.1500
  30. Pace, 1989, A new method for determining the heat capacity change for protein folding, Biochemistry, 28, 2520, 10.1021/bi00432a026 · DOI · Paper page
  31. Pace, 1980, Substrate stabilization of lysozyme to thermal and guanidine hydrochloride denaturation, The Journal of Biological Chemistry, 255, 3862, 10.1016/S0021-9258(19)85604-1 · DOI · Paper page
  32. PTEN. 2020. PTEN gene homepage - Global Variome shared LOVD. LOVD. PTEN:201016. https://databases.lovd.nl/shared/genes/PTEN.
  33. Salim, 2016, COTI-2, a novel small molecule that is active against multiple human Cancer cell lines in vitro and in vivo, Oncotarget, 7, 41363, 10.18632/oncotarget.9133 · DOI · Paper page
  34. Sarkar, 2008, Lattice: Multivariate Data Visualization with R, 10.1007/978-0-387-75969-2 · DOI · Paper page
  35. Schellman, 1975, Macromolecular binding, Biopolymers, 14, 999, 10.1002/bip.1975.360140509 · DOI · Paper page
  36. Siegel, 2020, Cancer statistics, 2020, CA: A Cancer Journal for Clinicians, 70, 7, 10.3322/caac.21590 · DOI · Paper page
  37. Stephen, 1992, Mutant conformation of p53. precise epitope mapping using a filamentous phage epitope library, Journal of Molecular Biology, 225, 577, 10.1016/0022-2836(92)90386-x · DOI
  38. Talla-Singh, 2008, Refinement of noncalorimetric determination of the change in heat capacity, DeltaC(p), of protein unfolding and validation across a wide temperature range, Proteins: Structure, Function, and Bioinformatics, 71, 1607, 10.1002/prot.22016 · DOI
  39. Vinkenborg, 2009, Genetically encoded FRET sensors to monitor intracellular Zn2+ homeostasis, Nature Methods, 6, 737, 10.1038/nmeth.1368 · DOI · Paper page
  40. Wilson, 2012, Picomolar concentrations of free zinc(II) ions regulate receptor protein-tyrosine phosphatase β activity, Journal of Biological Chemistry, 287, 9322, 10.1074/jbc.C111.320796 · DOI · Paper page
  41. Yu, 2012, Allele-specific p53 mutant reactivation, Cancer Cell, 21, 614, 10.1016/j.ccr.2012.03.042 · DOI · Paper page
  42. Yu, 2014, Small molecule restoration of wildtype structure and function of mutant p53 using a novel zinc-metallochaperone based mechanism, Oncotarget, 5, 8879, 10.18632/oncotarget.2432 · DOI · Paper page
  43. Yue, 2005, Loss of protein structure stability as a major causative factor in monogenic disease, Journal of Molecular Biology, 353, 459, 10.1016/j.jmb.2005.08.020 · DOI · Paper page
  44. Zaman, 2019, Combinatorial therapy of zinc metallochaperones with mutant p53 reactivation and diminished copper binding, Molecular Cancer Therapeutics, 18, 1355, 10.1158/1535-7163.MCT-18-1080 · DOI · Paper page

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Metadata

Authors
Blanden, A. R., Yu, X., Blayney, A. J., Demas, C., Ha, J.-H., Liu, Y., Withers, T., Carpizo, D. R., & Loh, S. N.
Venue
eLife
Published
2020-12-02
Volume
9
ISSN
2050-084X
Cited by
78
References
2
Language
en
Funders
  • National Institutes of Health (F30 GM113299, R01 CA200800, K08 CA172676)
  • Breast Cancer Research Foundation

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Blanden, A. R., Yu, X., Blayney, A. J., Demas, C., Ha, J.-H., Liu, Y., Withers, T., Carpizo, D. R., & Loh, S. N. (2020). Zinc shapes the folding landscape of p53 and establishes a pathway for reactivating structurally diverse cancer mutants. eLife. https://doi.org/10.7554/elife.61487

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