Check biochemistry, genetics and molecular biology papers: citations, claims and retractions

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

Nishita, M., Park, S.-Y., Nishio, T., Kamizaki, K., Wang, Z., Tamada, K., Takumi, T., Hashimoto, R., Otani, H., Pazour, G. J., et al. (2017) · Scientific Reports

Genetic and Kidney Cyst DiseasesCellular transport and secretion

Cited by 15,947

Accurate structure prediction of biomolecular interactions with AlphaFold 3

Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., et al. (2024) · Nature

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 15,861

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Stamatakis, A. (2006) · Bioinformatics

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 15,582

Differential expression analysis for sequence count data

Anders, S., & Huber, W. (2010) · Genome Biology

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 15,581

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Trapnell, C., Williams, B. A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M. J., Salzberg, S. L., Wold, B. J., & Pachter, L. (2010) · Nature Biotechnology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 15,556

Integrated analysis of multimodal single-cell data

Hao, Y., Hao, S., Andersen-Nissen, E., Mauck, W. M., Zheng, S., Butler, A., Lee, M. J., Wilk, A. J., Darby, C., Zagar, M., et al. (2020) · Cell

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 15,508

Comprehensive Integration of Single-Cell Data

Stuart, T., Butler, A., Hoffman, P., Hafemeister, C., Papalexi, E., Mauck, W. M., Hao, Y., Stoeckius, M., Smibert, P., & Satija, R. (2019) · Cell

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 15,453

GSVA: gene set variation analysis for microarray and RNA-Seq data

Hänzelmann, S., Castelo, R., & Guinney, J. (2013) · BMC Bioinformatics

Bioinformatics and Genomic NetworksGene expression and cancer classification

Cited by 15,440

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., & Mello, C. C. (1998) · Nature

RNA Interference and Gene DeliveryRNA Research and Splicing

Cited by 15,429

FLASH: fast length adjustment of short reads to improve genome assemblies

Magoč, T., & Salzberg, S. L. (2011) · Bioinformatics

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 15,366

Multiplex Genome Engineering Using CRISPR/Cas Systems

Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science

CRISPR and Genetic EngineeringRNA regulation and disease

Cited by 15,339

Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features

Kabsch, W., & Sander, C. (1983) · Biopolymers

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 15,320

Tissue-based map of the human proteome

Uhlén, M., Fagerberg, L., Hallström, B. M., Lindskog, C., Oksvold, P., Mardinoglu, A., Sivertsson, Å., Kampf, C., Sjöstedt, E., Asplund, A., et al. (2015) · Science

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 15,286

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

Gao, J., Aksoy, B. A., Dogrusoz, U., Dresdner, G., Gross, B., Sumer, S. O., Sun, Y., Jacobsen, A., Sinha, R., Larsson, E., et al. (2013) · Science Signaling

Cancer Genomics and DiagnosticsBioinformatics and Genomic Networks

Cited by 15,160

UCHIME improves sensitivity and speed of chimera detection

Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 15,114

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Kim, D., Paggi, J. M., Park, C., Bennett, C., & Salzberg, S. L. (2019) · Nature Biotechnology

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 15,022

The Hallmarks of Aging

López-Otín, C., Blasco, M. A., Partridge, L., Serrano, M., & Kroemer, G. (2013) · Cell

Genetics, Aging, and Longevity in Model OrganismsTelomeres, Telomerase, and Senescence

Cited by 14,982

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Price, M. N., Dehal, P. S., & Arkin, A. P. (2010) · PLoS ONE

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 14,894

Minimap2: Pairwise alignment for nucleotide sequences

Li, H. (2018) · Bioinformatics

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 14,807

A rapid alkaline extraction procedure for screening recombinant plasmid DNA

Birnboim, H. C., & Doly, J. (1979) · Nucleic Acids Research

Molecular Biology Techniques and ApplicationsBacterial Genetics and Biotechnology

Cited by 14,686

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Zhou, Y., Zhou, B., Pache, L., Chang, M., Khodabakhshi, A. H., Tanaseichuk, O., Benner, C., & Chanda, S. K. (2019) · Nature Communications

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 14,611

Evolutionary trees from DNA sequences: A maximum likelihood approach.

Felsenstein, J. (1981) · Journal of Molecular Evolution

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 14,571

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

Magiorakos, A.-P., Srinivasan, A., Carey, R. B., Carmeli, Y., Falagas, M. E., Giske, C. G., Harbarth, S., Hindler, J. F., Kahlmeter, G., Olsson-Liljequist, B., et al. (2012) · Clinical Microbiology and Infection

Antibiotic Resistance in BacteriaAntibiotic Use and Resistance

Cited by 14,449

Free radicals and antioxidants in normal physiological functions and human disease

Valko, M., Leibfritz, D., Moncol, J., Cronin, M. T. D., Mazur, M., & Telser, J. (2007) · The International Journal of Biochemistry & Cell Biology

Redox biology and oxidative stressAntioxidant Activity and Oxidative Stress

Cited by 14,269