Check biochemistry, genetics and molecular biology papers: citations, claims and retractions

Fast and sensitive protein alignment using DIAMOND

Buchfink, B., Xie, C., & Huson, D. H. (2015) · Nature Methods

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 14,201

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nucleic Acids Research

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 14,108

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

Excoffier, L., Smouse, P. E., & Quattro, J. M. (1992) · Genetics

Genetic diversity and population structureForensic and Genetic Research

Cited by 13,929

Matrix elasticity directs stem cell lineage specification

Engler, A. J., Sen, S., Sweeney, H. L., & Discher, D. E. (2006) · Cell

Cellular Mechanics and InteractionsMesenchymal stem cell research

Cited by 13,915

The sequence of the human genome

Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 13,909

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Yang, Z. (2007) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 13,879

Apoptosis: A Review of Programmed Cell Death

Elmore, S. (2007) · Toxicologic Pathology

Cell death mechanisms and regulationCancer-related Molecular Pathways

Cited by 13,853

The Molecular Signatures Database Hallmark Gene Set Collection

Liberzon, A., Birger, C., Thorvaldsdóttir, H., Ghandi, M., Mesirov, J. P., & Tamayo, P. (2015) · Cell Systems

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 13,807

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 13,696

On the origin of cancer cells

Warburg, O. (1956) · Science

Cancer Genomics and DiagnosticsCancer Cells and Metastasis

Cited by 13,425

Mfold web server for nucleic acid folding and hybridization prediction

Zuker, M. (2003) · Nucleic Acids Research

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 13,404

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y. C., Laslo, P., Cheng, J. X., Murre, C., Singh, H., & Glass, C. K. (2010) · Molecular Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 13,382

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Simão, F. A., Waterhouse, R. M., Ioannidis, P., Kriventseva, E. V., & Zdobnov, E. M. (2015) · Bioinformatics

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 13,344

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

Edgar, R. (2002) · Nucleic Acids Research

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 13,288

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Butler, A., Hoffman, P., Smibert, P., Papalexi, E., & Satija, R. (2018) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 13,174

RNA-Seq: a revolutionary tool for transcriptomics

Wang, Z., Gerstein, M., & Snyder, M. (2009) · Nature Reviews Genetics

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 13,174

Comparative Protein Modelling by Satisfaction of Spatial Restraints

Šali, A., & Blundell, T. L. (1993) · Journal of Molecular Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 12,977

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

Lee, R. C., Feinbaum, R. L., & Ambros, V. (1993) · Cell

Developmental Biology and Gene RegulationRNA Research and Splicing

Cited by 12,948

Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells

Valadi, H., Ekström, K., Bossios, A., Sjöstrand, M., Lee, J. J., & Lötvall, J. O. (2007) · Nature Cell Biology

Extracellular vesicles in diseaseCellular transport and secretion

Cited by 12,834

Second-generation PLINK: rising to the challenge of larger and richer datasets

Chang, C. C., Chow, C. C., Tellier, L. C., Vattikuti, S., Purcell, S. M., & Lee, J. J. (2015) · Gigascience

Genetic Associations and EpidemiologyGenetic Mapping and Diversity in Plants and Animals

Cited by 12,709

Salmon provides fast and bias-aware quantification of transcript expression

Patro, R., Duggal, G., Love, M. I., Irizarry, R. A., & Kingsford, C. (2017) · Nature Methods

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 12,700

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., & Salzberg, S. L. (2013) · Genome Biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 12,668

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

Krogh, A., Larsson, B., von Heijne, G., & Sonnhammer, E. L. L. (2001) · Journal of Molecular Biology

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 12,654

CheckM: Assessing the Quality of Microbial Genomes Recovered from Isolates, Single Cells, and Metagenomes

Parks, D. H., Imelfort, M., Skennerton, C. T., Hugenholtz, P., & Tyson, G. W. (2015) · Genome Research

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 12,496