Check biochemistry, genetics and molecular biology papers: citations, claims and retractions

<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool

Kent, W. J. (2002) · Genome Research

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 8,480

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., et al. (2013) · Nature Protocols

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 8,464

Most mammalian mRNAs are conserved targets of microRNAs

Friedman, R. C., Farh, K. K.-H., Burge, C. B., & Bartel, D. P. (2009) · Genome Research

MicroRNA in disease regulationRNA Research and Splicing

Cited by 8,462

Inference and analysis of cell-cell communication using CellChat

Jin, S., Guerrero-Juarez, C. F., Zhang, L., Chang, I., Ramos, R., Kuan, C.-H., Myung, P., Plikus, M. V., & Nie, Q. (2021) · Nature Communications

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 8,409

Shedding light on the cell biology of extracellular vesicles

van Niel, G., D'Angelo, G., & Raposo, G. (2018) · Nature Reviews Molecular Cell Biology

Extracellular vesicles in diseaseCellular transport and secretion

Cited by 8,369

Finding the missing heritability of complex diseases

Manolio, T. A., Collins, F. S., Cox, N. J., Goldstein, D. B., Hindorff, L. A., Hunter, D. J., McCarthy, M. I., Ramos, E. M., Cardon, L. R., Chakravarti, A., et al. (2009) · Nature

Genetic Associations and EpidemiologyGenetic Mapping and Diversity in Plants and Animals

Cited by 8,336

GCTA: a tool for genome-wide complex trait analysis

Yang, J., Lee, S. H., Goddard, M. E., & Visscher, P. M. (2011) · The American Journal of Human Genetics

Genetic Associations and EpidemiologyGenetic and phenotypic traits in livestock

Cited by 8,279

How mitochondria produce reactive oxygen species

Murphy, M. P. (2009) · Biochemical Journal

Mitochondrial Function and PathologyRedox biology and oxidative stress

Cited by 8,207

The protein kinase complement of the human genome

Manning, G., Whyte, D. B., Martinez, R., Hunter, T., & Sudarsanam, S. (2002) · Science

Protein Kinase Regulation and GTPase SignalingGenomics and Phylogenetic Studies

Cited by 8,145

The Ensembl Variant Effect Predictor

McLaren, W., Gil, L., Hunt, S. E., Riat, H. S., Ritchie, G. R. S., Thormann, A., Flicek, P., & Cunningham, F. (2016) · Genome Biology

Genomics and Rare DiseasesGenomics and Phylogenetic Studies

Cited by 8,099

Extracellular vesicles: Exosomes, microvesicles, and friends

Raposo, G., & Stoorvogel, W. (2013) · Journal of Cell Biology

Extracellular vesicles in diseaseCellular transport and secretion

Cited by 8,099

deepTools2: a next generation web server for deep-sequencing data analysis

Ramírez, F., Ryan, D. P., Grüning, B., Bhardwaj, V., Kilpert, F., Richter, A. S., Heyne, S., Dündar, F., & Manke, T. (2016) · Nucleic Acids Research

Genomics and Phylogenetic StudiesGenomics and Chromatin Dynamics

Cited by 8,096

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

Szklarczyk, D., Gable, A. L., Nastou, K. C., Lyon, D., Kirsch, R., Pyysalo, S., Doncheva, N. T., Legeay, M., Fang, T., Bork, P., et al. (2021) · Nucleic Acids Research

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 8,056

Molecular Evolution and Phylogenetics

Nei, M., & Kumar, S. (2000)

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 8,012

Circular RNAs are a large class of animal RNAs with regulatory potency

Memczak, S., Jens, M., Elefsinioti, A., Torti, F., Krueger, J., Rybak, A., Maier, L., Mackowiak, S. D., Gregersen, L. H., Munschauer, M., et al. (2013) · Nature

Circular RNAs in diseasesRNA Research and Splicing

Cited by 7,990

Natural RNA circles function as efficient microRNA sponges

Hansen, T. B., Jensen, T. I., Clausen, B. H., Bramsen, J. B., Finsen, B., Damgaard, C. K., & Kjems, J. (2013) · Nature

Circular RNAs in diseasesMicroRNA in disease regulation

Cited by 7,985

Circulating microRNAs as stable blood-based markers for cancer detection

Mitchell, P. S., Parkin, R. K., Kroh, E. M., Fritz, B. R., Wyman, S. K., Pogosova-Agadjanyan, E. L., Peterson, A., Noteboom, J., O'Briant, K. C., Allen, A., et al. (2008) · Proceedings of the National Academy of Sciences

MicroRNA in disease regulationExtracellular vesicles in disease

Cited by 7,969

The MR-Base platform supports systematic causal inference across the human phenome

Hemani, G., Zheng, J., Elsworth, B., Wade, K. H., Haberland, V., Baird, D., Laurin, C., Burgess, S., Bowden, J., Langdon, R., et al. (2018) · eLife

Genetic Associations and EpidemiologyBioinformatics and Genomic Networks

Cited by 7,959

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

Barretina, J., Caponigro, G., Stransky, N., Venkatesan, K., Margolin, A. A., Kim, S., Wilson, C. J., Lehár, J., Kryukov, G. V., Sonkin, D., et al. (2012) · Nature

Cancer Genomics and DiagnosticsComputational Drug Discovery Methods

Cited by 7,950

Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps

Meuwissen, T. H. E., Hayes, B. J., & Goddard, M. E. (2001) · Genetics

Genetic and phenotypic traits in livestockGenetic Mapping and Diversity in Plants and Animals

Cited by 7,917

Diversity of the Human Intestinal Microbial Flora

Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 7,913

A map of human genome variation from population-scale sequencing.

The 1000 Genomes Project Consortium (2010) · Nature

Genetic Associations and EpidemiologyGenomics and Rare Diseases

Cited by 7,877

A scaling normalization method for differential expression analysis of RNA-seq data

Robinson, M. D., & Oshlack, A. (2010) · Genome Biology

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 7,876

Cancer Genome Landscapes

Vogelstein, B., Papadopoulos, N., Velculescu, V. E., Zhou, S., Diaz, L. A., & Kinzler, K. W. (2013) · Science

Cancer Genomics and DiagnosticsChromatin Remodeling and Cancer

Cited by 7,863