Convergent functional genomics of genome‐wide association data for bipolar disorder: Comprehensive identification of candidate genes, pathways and mechanisms
Abstract
Given the mounting convergent evidence implicating many more genes in complex disorders such as bipolar disorder than the small number identified unambiguously by the first‐generation Genome‐Wide Association studies (GWAS) to date, there is a strong need for improvements in methodology. One strategy is to include in the next generation GWAS larger numbers of subjects, and/or to pool independent studies into meta‐analyses. We propose and provide proof of principle for the use of a complementary approach, convergent functional genomics (CFG), as a way of mining the existing GWAS datasets for signals that are there already, but did not reach significance using a genetics‐only approach. With the CFG approach, the integration of genetics with genomics, of human and animal model data, and of multiple independent lines of evidence converging on the same genes offers a way of extracting signal from noise and prioritizing candidates. In essence our analysis is the most comprehensive integration of genetics and functional genomics to date in the field of bipolar disorder, yielding a series of novel (such as Klf12, Aldh1a1, A2bp1, Ak3l1, Rorb, Rora) and previously known (such as Bdnf, Arntl, Gsk3b, Disc1, Nrg1, Htr2a) candidate genes, blood biomarkers, as well as a comprehensive identification of pathways and mechanisms. These become prime targets for hypothesis driven follow‐up studies, new drug development and personalized medicine approaches. © 2008 Wiley‐Liss, Inc.
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Genetic linkage studies have been equivocal, yet modest associations have been reported between bipolar disorder and multiple genes of the molecular circadian clock.
“Genetic linkage studies have been equivocal115, yet modest associations have been reported between BD and multiple genes of the molecular circadian clock116,117.”
From Circadian rhythm disruption and mental health (2020) · cites this paper as [116]
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Self-citationAssociation of ALDH1 Promoter Polymorphisms With Alcohol-Related Phenotypes in Trinidad and Tobago*
Moore, S., Montane‐Jaime, K., Shafe, S., Joseph, R., Crooks, H., Carr, L. G., & Ehlers, C. L. (2007) · Journal of Studies on Alcohol and Drugs · doi:10.15288/jsad.2007.68.192 · Cited by 27 · see citing works
Luο, X., Zuo, L., Kranzler, H. R., et al. (2008) · American Journal of Medical Genetics Part B Neuropsychiatric Genetics · doi:10.1002/ajmg.b.30701 · Cited by 27 · see citing works
Analysis of Synapsin III –196 Promoter Mutation in Schizophrenia and Bipolar Disorder
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Genomics and genome-wide association studies: An integrative approach to expression QTL mapping
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Niculescu, A. B., & Kelsoe, J. R. (2002) · CNS Spectrums · doi:10.1017/s1092852900017582 · Cited by 21 · see citing works
Self-citationIshiguro, H., Ohtsuki, T., Okubo, Y., et al. (2001) · Journal of Neural Transmission · doi:10.1007/s007020170034 · Cited by 20 · see citing works
Possible linkage of schizophrenia and bipolar affective disorder to chromosome 3q29
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Sex Hormones, Darwinism, and Depression
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Self-citationGenomic studies of mood disorders -- the brain as a muscle?
Niculescu, A. B. (2005) · Genome biology · doi:10.1186/gb-2005-6-4-215 · Cited by 16 · see citing works
Self-citationGenetic linkage and bipolar disorder: a cautionary note
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MET BDNF protects against morphological S allele effects of 5-HTTLPR
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ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
Chen, J., Bardes, E. E., Aronow, B. J., & Jegga, A. G. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp427 · Cited by 2,952 · see citing works
Circadian rhythm disruption and mental health
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The genetics of bipolar disorder
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Fernandes, B. S., Molendijk, M. L., Köhler, C. A., Soares, J. C., Leite, C. M. G. S., Machado-Vieira, R., Ribeiro, T. L., Silva, J. C., Sales, P. M. G., Quevedo, J., et al. (2015) · BMC Medicine · doi:10.1186/s12916-015-0529-7 · Cited by 291 · see citing works
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Frey, B. N., Andreazza, A. C., Houenou, J., Jamain, S., Goldstein, B. I., Frye, M. A., Leboyer, M., Berk, M., Malhi, G. S., Lopez-Jaramillo, C., et al. (2013) · Australian & New Zealand Journal of Psychiatry · doi:10.1177/0004867413478217 · Cited by 234 · see citing works
Identification of Pathways for Bipolar Disorder: A Meta-analysis
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Self-citationRBFOX1 regulates both splicing and transcriptional networks in human neuronal development
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Discovery and validation of blood biomarkers for suicidality
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Self-citationGROUP investigators, Børglum, A. D., Demontis, D., Grove, J., Pallesen, J., Hollegaard, M. V., Pedersen, C. B., Hedemand, A., Mattheisen, M., Uitterlinden, A., et al. (2014) · Molecular Psychiatry · doi:10.1038/mp.2013.2 · Cited by 186 · see citing works
Koenen, K. C., Uddin, M., Chang, S.-C., Aiello, A. E., Wildman, D. E., Goldmann, E., & Galea, S. (2011) · Depression and Anxiety · doi:10.1002/da.20825 · Cited by 174 · see citing works
Interactions of the serotonin and circadian systems: nature and nurture in rhythms and blues
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Genetic approaches to understanding post-traumatic stress disorder
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Sleep- and circadian rhythm–associated pathways as therapeutic targets in bipolar disorder
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Orchestration of Neurodevelopmental Programs by RBFOX1
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NFIB haploinsufficiency is associated with intellectual disability and macrocephaly
Schanze, I., Bunt, J., Lim, J. W. C., Schanze, D., Dean, R. J., Alders, M., Blanchet, P., Attié-Bitach, T., Berland, S., Boogert, S., et al. (2018) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2018.10.006 · Cited by 63 · see citing works
Gene expression alterations in bipolar disorder postmortem brains
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Hammock, E. A. D., & Levitt, P. (2011) · Developmental Neuroscience · doi:10.1159/000323732 · Cited by 21 · see citing works
- Authors
- Le‐Niculescu, H., Patel, S. D., Bhat, M., Kuczenski, R., Faraone, S. V., Tsuang, M. T., McMahon, F. J., Schork, N. J., Nurnberger, J. I., & Niculescu, A. B.
- Affiliations
- Indiana University Indianapolis (US)
- University of California San Diego (US)
- SUNY Upstate Medical University (US)
- National Institutes of Health (US)
- Scripps Research Institute (US)
- Corresponding author
- Niculescu, A.B.
- Venue
- American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
- Publisher
- Wiley
- Published
- 2008-11-21
- Volume
- 150B
- Issue
- 2
- Pages
- 155-181
- ISSN
- 1552-4841 (ISSN-L)
- 1552-485X
- OpenAlex
- W2137633946
- Cited by
- 201
- References
- 182
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 3 · 2023: 2 · 2022: 4 · 2021: 7 · 2020: 6 · 2019: 7 · 2018: 10 · 2017: 9 · 2016: 23 · 2015: 18 · 2014: 14 · 2013: 18 · 2012: 20
- FWCI
- 12.60
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- American Journal of Medical Genetics Part B Neuropsychiatric Genetics (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of Mental Health (R01MH071912)
- Topics
- Health Sciences › Medicine › Psychiatry and Mental health › Bipolar Disorder and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Health Sciences › Medicine › Psychiatry and Mental health › Schizophrenia research and treatment
- Keywords
- bipolar disorder, candidate genes, gene pathways, blood biomarkers, KLF12, ALDH1A1, A2BP1, RORB, RORA, brain-derived neurotrophic factor, Bmal1, GSK3B, DISC1, neuregulin-1, HTR2A, drug discovery targets
- MeSH terms
- Animals, Bipolar Disorder, Humans, Drug Design, Signal Transduction, Biomarkers, Gene Expression Profiling, Genomics, Mice, Genome-Wide Association Study
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