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Genetic analysis of early holocene skeletal remains from Alaska and its implications for the settlement of the Americas

Kemp, Brian M., Malhi, Ripan S., McDonough, John, Bolnick, Deborah A., Eshleman, Jason A., Rickards, Olga, Martinez‐Labarga, Cristina, Johnson, John R., Lorenz, Joseph G., Dixon, E. James, Fifield, Terence E., Heaton, Timothy H., Worl, Rosita, Smith, David Glenn·2007·American Journal of Physical Anthropology
DOI 10.1002/ajpa.20543
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Abstract

Mitochondrial and Y‐chromosome DNA were analyzed from 10,300‐year‐old human remains excavated from On Your Knees Cave on Prince of Wales Island, Alaska (Site 49‐PET‐408). This individual's mitochondrial DNA (mtDNA) represents the founder haplotype of an additional subhaplogroup of haplogroup D that was brought to the Americas, demonstrating that widely held assumptions about the genetic composition of the earliest Americans are incorrect. The amount of diversity that has accumulated in the subhaplogroup over the past 10,300 years suggests that previous calibrations of the mtDNA clock may have underestimated the rate of molecular evolution. If substantiated, the dates of events based on these previous estimates are too old, which may explain the discordance between inferences based on genetic and archaeological evidence regarding the timing of the settlement of the Americas. In addition, this individual's Y‐chromosome belongs to haplogroup Q‐M3*, placing a minimum date of 10,300 years ago for the emergence of this haplogroup. Am J Phys Anthropol, 2007. © 2007 Wiley‐Liss, Inc.

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  • D4h3a is one of the rare mtDNA lineages specific to Native Americans, distributed along the Pacific coast in North and South America among contemporary populations and present in ancient specimens.

    “D4h3a is one of the rare mtDNA lineages specific to Native Americans, it is distributed along the Pacific coast in North and South America among contemporary populations11 and is also present in ancient specimens12.”

    From The genome of a Late Pleistocene human from a Clovis burial site in western Montana (2014) · cites this paper as [12]

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Research works printed but not linked: 121

  1. 10.1086/303004 · DOI
  2. 10.1038/13779 · DOI · Paper page
  3. 10.1007/BF02198840 · DOI
  4. Betty DJ, 1996, Multiple independent origins of the COII/tRNA(Lys) intergenic 9‐bp mtDNA deletion in aboriginal Australians, Am J Hum Genet, 58, 428
  5. 10.1086/302141 · DOI
  6. BolnickDA.2005.The genetic prehistory of eastern North America: evidence from ancient and modern DNA. Ph.D. dissertation University of California Davis.
  7. 10.1002/ajpa.10284 · DOI
  8. 10.1073/pnas.94.5.1866 · DOI
  9. 10.1086/301629 · DOI
  10. 10.1086/377588 · DOI
  11. 10.1007/s00414-001-0283-6 · DOI
  12. 10.1086/302133 · DOI
  13. 10.1086/321266 · DOI
  14. Dixon EJ, 1999, Bones, boats, & bison: Archaeology and the first colonization of Western North America
  15. 10.1002/(SICI)1520-6548(199709)12:6<689::AID-GEA8>3.0.CO;2-V · DOI
  16. EshlemanJA.2002.Mitochondrial DNA and prehistoric population movements in Western North America. Ph.D. dissertation University of California Davis.
  17. Fiedel SJ, 2004, The Kennewick follies: “New” theories about the peopling of the Americas, J Archaeol Res, 60, 75
  18. Forster P, 1996, Origin and evolution of native American mDNA variation: a reappraisal, Am J Hum Genet, 59, 935
  19. 10.1093/molbev/msg188 · DOI
  20. 10.1002/ajpa.10337 · DOI
  21. 10.1126/science.279.5347.28 · DOI
  22. Ginther C, 1993, Genetic variation among the Mapuche Indians from the Patagonian region of Argentina: mitochondrial DNA sequence variation and allele frequencies of several nuclear genes, EXS, 67, 211
  23. 10.1086/302801 · DOI · Paper page
  24. 10.1093/nar/26.1.126 · DOI
  25. 10.1093/nar/23.5.881 · DOI
  26. 10.1371/journal.pbio.0030193 · DOI
  27. 10.1016/j.tig.2005.11.006 · DOI
  28. 10.1093/molbev/msi145 · DOI
  29. Horai S, 1990, Intraspecific nucleotide sequence differences in the major noncoding region of human mitochondrial DNA, Am J Hum Genet, 46, 828
  30. 10.1073/pnas.92.2.532 · DOI
  31. Horai S, 1993, Peopling of the Americas, founded by four major lineages of mitochondrial DNA, Mol Biol Evol, 10, 23
  32. 10.1093/nar/21.16.3913 · DOI · Paper page
  33. 10.1086/368264 · DOI
  34. 10.1126/science.276.5310.227 · DOI · Paper page
  35. Johnson JR, Genetics, linguistics, and prehistoric migrations: an analysis of California Indian mitochondrial DNA lineages, J Calif Great Basin Anthropol, 26, 33
  36. Johnson JR, 2002, Proceedings of the Fifth California Islands Symposium, 541
  37. 10.1002/ajmg.1320570340 · DOI
  38. 10.1016/0025-3227(95)00024-S · DOI
  39. KaestleFA.1998.Molecular evidence for prehistoric native American population movement: the numic expansion. Ph.D. dissertation University of California Davis.
  40. 10.1086/302282 · DOI
  41. KempBM.2006.Mesoamerica and Southwest prehistory and the entrance of humans into the Americas: mitochondrial DNA evidence. Ph.D. dissertation University of California Davis.
  42. 10.1016/j.forsciint.2004.11.017 · DOI
  43. 10.1086/377005 · DOI
  44. 10.1016/S0960-9822(00)80057-3 · DOI
  45. 10.1093/oxfordjournals.molbev.a003996 · DOI · Paper page
  46. Kolman CJ, 1997, Mitochondrial and nuclear DNA diversity in the Choco and Chibcha Amerinds of Panama, Genetics, 147, 1289, 10.1093/genetics/147.3.1289 · DOI
  47. Kolman CJ, 1995, Reduced mtDNA diversity in the Ngobe Amerinds of Panama, Genetics, 140, 275, 10.1093/genetics/140.1.275 · DOI
  48. 10.1093/genetics/142.4.1321 · DOI
  49. 10.1093/bib/5.2.150 · DOI
  50. 10.1002/ajpa.10236 · DOI
  51. 10.1046/j.1469-1809.2001.6520137.x · DOI
  52. 10.1126/science.1068105 · DOI
  53. 10.1016/S0379-0738(97)02114-2 · DOI
  54. Lorenz JG, 1997, Distribution of sequence variation in the mtDNA control region of native North Americans, Hum Biol, 69, 749
  55. 10.1086/301949 · DOI
  56. Lum JK, 1994, Polynesian mitochondrial DNAs reveal three deep maternal lineage clusters, Hum Biol, 66, 567
  57. 10.1126/science.1109792 · DOI · Paper page
  58. 10.1353/hub.2004.0023 · DOI
  59. 10.1086/339690 · DOI
  60. Malhi RS, Haplogroup M discovered in prehistoric North America, J Arch Sci
  61. 10.1002/ajpa.10138 · DOI
  62. 10.1353/hub.2001.0008 · DOI
  63. 10.1073/pnas.0506195102 · DOI · Paper page
  64. 10.1093/genetics/152.3.1103 · DOI
  65. MillsLA.2003.Mitochondrial DNA analysis of the Ohio Hopewell of the Hopewell Mound Group. Ph.D. dissertation Department of Anthropology State University Columbus.
  66. 10.1111/j.1469-1809.1996.tb01193.x · DOI
  67. 10.1016/j.jas.2004.12.002 · DOI
  68. 10.1002/1096-8644(200009)113:1<19::AID-AJPA3>3.0.CO;2-X · DOI
  69. Mountain JL, 1995, Demographic history of India and mtDNA‐sequence diversity, Am J Hum Genet, 56, 979
  70. 10.1073/pnas.96.6.3325 · DOI
  71. 10.1002/ajpa.10056 · DOI
  72. 10.1002/(SICI)1522-2683(19990101)20:8<1729::AID-ELPS1729>3.0.CO;2-# · DOI
  73. 10.1016/B978-0-12-372180-8.50024-X · DOI
  74. 10.1002/(SICI)1096-8644(199604)99:4<507::AID-AJPA1>3.0.CO;2-R · DOI
  75. 10.1007/s004140050177 · DOI
  76. 10.1111/j.1095-8312.2004.00368.x · DOI
  77. 10.1002/(SICI)1096-8644(199609)101:1<29::AID-AJPA3>3.0.CO;2-8 · DOI
  78. 10.1353/hub.2004.0025 · DOI
  79. 10.1086/302513 · DOI
  80. 10.1353/hub.2004.0009 · DOI
  81. 10.1086/303038 · DOI
  82. Santos M, 1994, MtDNA variation in the Chibcha Amerindian Huetar from Costa Rica, Hum Biol, 66, 963
  83. 10.1111/j.1469-1809.1996.tb01194.x · DOI
  84. Schurr TG, 2004, Entering America: Northeast Asia and Beringia before the last glacial maximum, 187
  85. 10.1146/annurev.anthro.33.070203.143932 · DOI
  86. Schurr TG, 1990, Amerindian mitochondrial DNAs have rare Asian mutations at high frequencies, suggesting they derived from four primary maternal lineages, Am J Hum Genet, 46, 613
  87. 10.1002/(SICI)1096-8644(199901)108:1<1::AID-AJPA1>3.0.CO;2-1 · DOI
  88. 10.1086/377589 · DOI
  89. 10.1126/science.1101074 · DOI
  90. Shields GF, 1993, MtDNA sequences suggest a recent evolutionary divergence for Beringian and northern North American populations, Am J Hum Genet, 53, 549
  91. ShookBA.2005.Ancient DNA and the biological history and prehistory of northeastern North America. Ph.D. Dissertation University of California Davis.
  92. 10.1086/302902 · DOI
  93. SimonsonJH DerenkoMV VoevodaMI ShieldsGF.1998.Genetic evidence for a Beringian bottleneck in Northern Native Americans during the Late Pleistocene. Data available only online at GenBank (http://www.ncbi.nlm.nih.gov).
  94. SimonsonJH DerenkoMV VoevodaMI ShieldsGF.1999.Genetic evidence for a Beringian bottleneck in Northern Native Americans during the Late Pleistocene. Data available only online at GenBank (http://www.ncbi.nlm.nih.gov).
  95. SimonsonJH ShieldsGF.1997.Genetic evidence for a Beringian bottleneck in Northern Native Americans during the Late Pleistocene. Data available only online at GenBank (http://www.ncbi.nlm.nih.gov).
  96. SimonsonJH ShieldsGF.1999.Genetic evidence for a Beringian bottleneck in Northern Native Americans during the Late Pleistocene. Data available only online at GenBank (http://www.ncbi.nlm.nih.gov).
  97. Smith DG, 2005, Paleoamerican origins: beyond Clovis, 243
  98. Southon JR, 2003, A post‐glacial record of 14C reservoir ages for the British Columbia coast, Can J Archaeol, 27, 95
  99. 10.1046/j.1529-8817.2003.00127.x · DOI
  100. 10.1086/302087 · DOI
  101. Stone AC, 1996, Genetic analysis of an 8000 year‐old Native American skeleton, Anc Biomol, 1, 83
  102. 10.1086/301838 · DOI · Paper page
  103. Sullivan KM, 1993, A rapid and quantitative DNA sex test: Fluorescence‐based PCR analysis of X‐Y homologous gene amelogenin, Biotechniques, 15, 636
  104. 10.1671/0272-4634(2003)023[0329:ANCAFT]2.0.CO;2 · DOI
  105. Sykes B, 1995, The origins of the Polynesians: an interpretation from mitochondrial lineage analysis, Am J Hum Genet, 57, 1463
  106. 10.1002/(SICI)1522-2683(19990101)20:8<1743::AID-ELPS1743>3.0.CO;2-V · DOI
  107. Torroni A, 1993, Asian affinities and continental radiation of the four founding Native American mtDNAs, Am J Hum Genet, 53, 563
  108. Toth N, 1991, The first Americans: search and research, 53
  109. 10.1073/pnas.93.1.196 · DOI
  110. 10.1126/science.1840702 · DOI
  111. Voevoda MI, 1994, Molecular genetic studies in the population of native inhabitants of Chuckee Peninsula. Analysis of polymorphism of mitochondrial DNA and of genes controlling alcohol metabolizing enymes, Sibirskii Ekolog Z, 1, 139
  112. VoevodaMI ShkapenkoAL.1999.Mitochondrial sequences in the hypervariable region I of West Siberian Finno‐Ugrians. Data available only online at GenBank (http://www.ncbi.nlm.nih.gov).
  113. 10.1073/pnas.88.19.8720 · DOI
  114. 10.1073/pnas.90.22.10663 · DOI
  115. 10.1002/(SICI)1520-6300(1996)8:3<317::AID-AJHB2>3.0.CO;2-X · DOI
  116. 10.1002/ajpa.10035 · DOI
  117. 10.1093/nar/15.2.529 · DOI
  118. 10.1086/338999 · DOI
  119. 10.1266/ggs.75.173 · DOI
  120. 10.1002/ajpa.10052 · DOI
  121. 10.1093/molbev/msh009 · DOI

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Metadata

Authors
Kemp, B. M., Malhi, R. S., McDonough, J., Bolnick, D. A., Eshleman, J. A., Rickards, O., Martinez‐Labarga, C., Johnson, J. R., Lorenz, J. G., Dixon, E. J., Fifield, T. E., Heaton, T. H., Worl, R., & Smith, D. G.
Venue
American Journal of Physical Anthropology
Publisher
Wiley
Published
2007-01-22
Volume
132
Issue
4
Pages
605-621
ISSN
  • 0002-9483
  • 1096-8644
DOI
10.1002/ajpa.20543
Cited by
162
References
5
Language
en
Licence
onlinelibrary.wiley.com/termsAndConditions#vor (vor)

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