Cited by 2Multiple Sclerosis Research StudiesNeurogenesis and neuroplasticity mechanismsNeuroinflammation and Neurodegeneration Mechanisms

Depletion of Microglia Increases Cortical Oligodendrocyte Density During Remyelination

Open access
Loo, Hannah Katherine, Gallegos, Joseph, Mialki, Christine, Perrin, Gregory E., Malloy, Thomas, Orthmann‐Murphy, Jennifer L.·2026·Glia

Abstract

Cortical demyelination is a critical contributor to progressive disease in multiple sclerosis (MS). The barriers to cortical remyelination following demyelination are not fully understood, and there are no remyelinating treatments for MS. We previously took advantage of the spatial and temporal resolution of longitudinal in vivo imaging to study cortical oligodendrocyte regeneration following cuprizone‐induced demyelination and found that oligodendrocyte regeneration was impaired. In this study, we investigated whether cortical reactive microglia disrupt oligodendrocyte regeneration. To do so, we used a combination of in situ RNA and immunofluorescence labeling to characterize cortical microglia reactive states following cuprizone‐mediated demyelination. We then depleted cortical microglia by administering a Csf1r inhibitor during the recovery period from cuprizone and quantified oligodendrocyte recovery. We found that following cortical demyelination, deep cortical microglia change morphology, downregulate homeostatic markers (P2RY12, TMEM119), and upregulate a marker (CD68) associated with activated macrophages. These reactive changes persisted through early recovery post‐cuprizone but resolved by late recovery. Depleting cortical microglia post‐cuprizone restored the baseline density of deep cortical ASPA+ oligodendrocytes at early and late recovery. There were also more deep cortical BCAS1+ differentiating oligodendrocytes at early recovery when microglia were depleted, suggesting that transient deep cortical reactive microglia impair oligodendrocyte differentiation following demyelinating injury. Together, we found that cortical microglia adopt spatially restricted reactive functions after demyelination and deep cortical reactive microglia transiently reduce differentiating oligodendrocytes. A potential therapeutic strategy for progressive MS could involve targeting transiently reactive microglia at the right time and place in cortical lesions to promote oligodendrocyte regeneration.

AI snapshot

Written from the paper’s full text.

TL;DR

In cuprizone-induced cortical demyelination, deep cortical microglia become transiently reactive and impair oligodendrocyte regeneration; depleting microglia with a Csf1r inhibitor during recovery restored deep cortical ASPA+ oligodendrocyte density to baseline and increased early BCAS1+ differentiating oligodendrocytes. These effects were not seen in sham-treated cortex, suggesting a reactive microglia-specific barrier.

Key findings

  • Deep cortical microglia adopted a reactive state after cuprizone: increased Iba1+ cell numbers in deep cortex (31.4 ± 1.8 baseline vs. 67.6 ± 9.6 cuprizone, p = 0.0014; 73.89 ± 3.3 early recovery, p = 0.0001), downregulated P2RY12 and TMEM119, and upregulated CD68; this persisted through early recovery and resolved by late recovery, while superficial microglia largely remained homeostatic.
  • Deep cortical ASPA+ oligodendrocytes were reduced after cuprizone and at early and late recovery versus baseline (baseline n = 4 vs. cuprizone n = 5, p = 0.0010; vs. early recovery n = 5, p < 0.0001; vs. late recovery n = 6, p = 0.0108), with no significant change in NG2+ OPC number and no compensatory increase in BCAS1+ differentiating oligodendrocytes.
  • Post-cuprizone PLX-3397 restored deep cortical ASPA+ oligodendrocyte density to baseline at early and late recovery; full cortical ASPA+ cells were ~3-fold higher at early recovery with PLX-3397 (30.9 ± 6.21 vs. 90.5 ± 11.66, p = 0.0328). Early recovery also had more BCAS1+ cells (17.6 ± 2.03 vs. 30.5 ± 1.68, p = 0.0203), with ~2-fold more in deep cortex and more pre-myelinating BCAS1+ cells (p = 0.0163), but no difference in early-myelinating BCAS1+ or BCAS1+GFP+ cells; only 3.57% ± 1.79 of deep cortical BCAS1+ cells expressed CC3.
  • In sham-fed mice, PLX-3397 depleted microglia (full cortex 89.7 ± 2.21 vs. 15.17 ± 5.86, p < 0.0001; deep cortex 31.4 ± 1.81 vs. 5.0 ± 1.83, p < 0.0001) without changing ASPA+ oligodendrocyte numbers or MBP myelin coverage. PLX-5622 was less robust than PLX-3397, and cortical GFAP+ astrocyte numbers were unchanged by microglia depletion.

Methods

  • Adult mice of both sexes were used: C57BL/6, Mobp-eGFP, and Cx3Cr1-eGFP mice. Mice received 0.2% w/v cuprizone for 4 weeks, then recovered for 2 weeks (“early”) or 5 weeks (“late”); Csf1r inhibitors PLX-3397 (290 ppm) or PLX-5562/PLX-5622 (1200 ppm) were given during recovery, with sham controls.
  • Immunofluorescence and in situ RNA labeling (RNAscope) quantified ASPA+ oligodendrocytes, MBP+ myelin, NG2+ OPCs, BCAS1+ differentiating oligodendrocytes, Iba1+/GFP+ microglia, P2RY12, CD68, TMEM119, GFAP, and CC3. Cortical regions were divided into superficial (0–250 μm), middle (250–500 μm), and deep (500–750 μm) zones relative to the pial surface; blinded observers performed cell counts and morphology classification.
  • Statistical comparisons used one-way ANOVA with Tukey correction unless otherwise specified; n represents animals per experiment; data are mean ± SEM, with significance at p < 0.05.

Limitations

  • Stated: PLX-3397 did not fully eliminate microglia, and surviving deep cortical microglia in PLX-treated mice could be pro-regenerative; individual Csf1r inhibitors may have unexplored off-target effects on oligodendrocyte lineage cells.
  • Stated: the study could not distinguish surviving baseline oligodendrocytes from newly formed oligodendrocytes, and increased ASPA+ cells at early recovery could represent dying, surviving, and newly formed cells; fate-tracing is needed, including to assess delayed clearance. The current immunostaining approach also did not detect subtle changes in oligodendrocyte density within the full cortical region, and no significant myelin density change was found with PLX-3397.
  • Evident: findings are from the mouse cuprizone model rather than MS tissue, and despite using both sexes, no sex-disaggregated analyses are reported; PLX-5622 effects were less robust than PLX-3397, with late-recovery ASPA+ numbers not significantly different from baseline.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1002/glia.70120

Cites

45 of 45 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

37 of 51 cited sources checked · 18 supported · 1 flagged · accuracy not yet measured

  • Findingown data

    There are no significant changes in OPC number in the deep cortex following cuprizone or recovery.

    “Similar to our prior study (Orthmann‐Murphy et al. 2020), we found no significant changes in OPC number in the deep cortex (Figure 1G, also see Figure S1C).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source

      In Results, under “Layer specific differences in cortical remyelination” (page unavailable), the paper reports no evidence of persistent OPC depletion during recovery in deeper cortical layers (p=0.086). That supports the recovery portion, but the passage does not establish that OPC number was unchanged immediately following cuprizone treatment. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • Findingcitation

    Even in the presence of Csf1r inhibitor, deep cortical reactive astrocytes persistently upregulate GFAP.

    “Similar to our previous findings (Orthmann‐Murphy et al. 2020), even in the presence of Csf1r inhibitor, deep cortical reactive astrocytes persistently upregulate GFAP (Figure S5B).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source

      The Results section, “Layer specific differences in cortical remyelination” (page unavailable), reports that GFAP expression in deeper cortical astrocytes remained elevated throughout recovery and that the cells retained a reactive morphology. It does not report this finding in the presence of a Csf1r inhibitor, so the inhibitor condition is unsupported. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Premisecitation

    Loss and formation of oligodendrocytes overlapped in early recovery.

    “Due to the exquisite spatial and temporal resolution of in vivo imaging, we also showed that the loss and formation of oligodendrocytes overlapped in early recovery, a finding that is difficult to appreciate by immunostaining alone.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source
  • Premisecitation

    Depletion of microglia using a Csf1r inhibitor either before or during cuprizone administration led to delayed or reduced demyelination in the corpus callosum.

    “Depletion of microglia, using an inhibitor of colony stimulating factor 1 receptor (Csf1r) either before or during cuprizone administration, led to delayed or reduced demyelination in the corpus callosum (Marzan et al. 2021).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Marzan et al. 2021 source
  • Premisecitation

    Nearly all oligodendrocytes present at 5 weeks recovery were newly formed.

    “Nearly all oligodendrocytes present at 5 weeks (“late”) recovery were newly formed.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source
  • Classified as probably not a substantial claim. 36
  • May combine two claims. 25
  • The quote only partly states this claim. 1
  • Classified as probably not a substantial claim.

    Premisecitation

    Although OPCs represent an available pool to replace lost oligodendrocytes and myelin, replacement is limited, particularly in cortical lesions.

    “Although OPCs represent an available pool to replace lost oligodendrocytes and myelin, replacement is limited, particularly in cortical lesions (Chang et al. 2012).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Chang et al. 2012 source

      The Results section, “Oligodendrocyte Progenitor Cell Density is Not Decreased in Cortical Lesions,” supports the availability of OPCs in cortical lesions. But the Discussion reports significantly greater oligodendrocyte generation and remyelination in cortex than in adjacent white matter—the opposite of the claim that replacement is particularly limited in cortical lesions. (LLM, conf=0.91)

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    PLX-5622 has 100-fold higher selectivity for Csf1r compared to other members of the platelet-derived growth factor receptor (PDGFRα) family of type III receptor tyrosine kinases.

    “PLX‐5622 has 100‐fold higher selectivity for Csf1r compared to other members of the platelet‐derived growth factor receptor (PDGFRα) family of type III receptor tyrosine kinases (Liu et al. 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Liu et al. 2019 source

      The Introduction reports at least 50-fold selectivity over four related kinases and over 100-fold selectivity against a broader panel. The Discussion describes 50- to 100-fold higher affinity for CSF1R than for related kinases and identifies PDGFRα and β as members of the same receptor family. Neither passage establishes 100-fold selectivity over every other member of that family. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    BCAS1 is expressed by newly differentiated, pre-myelinating, and early-myelinating oligodendrocytes that derive from NG2+ OPCs but do not yet express all mature oligodendrocyte markers.

    “Recent studies showed that BCAS1 (breast carcinoma amplified sequence 1) is expressed by a subset of the oligodendrocyte lineage: newly differentiated, pre‐myelinating, and early‐myelinating oligodendrocytes that derive from NG2+ OPCs but do not yet express all mature oligodendrocyte markers (Chapman et al. 2024; Fard et al. 2017).”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites Chapman et al. 2024 source
    • cites Fard et al. 2017 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Deep cortical astrocytes persistently upregulate GFAP following cuprizone administration.

    “We previously showed that deep cortical astrocytes persistently upregulate GFAP following cuprizone administration (Orthmann‐Murphy et al. 2020);”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductcitation

    A blinded observer categorized BCAS1+ cells as either early-myelinating or pre-myelinating.

    “To quantify BCAS1+ cell morphology, a blinded observer categorized BCAS1+ cells as either ‘early‐myelinating’ (possessing multiple processes) or ‘pre‐myelinating’ (possessing few processes) as previously described (Fard et al. 2017; Bergner et al. 2024).”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites Fard et al. 2017 source

      The Results section distinguishes BCAS1+ premyelinating cells from myelinating cells by morphology, and Materials and Methods (Study design) says quantitative analyses were performed blinded. But the cited paper describes premyelinating cells as having multiple, symmetrically radiating processes—not few processes—and myelinating cells as having segments aligned in parallel. It does not establish the citing sentence’s process-count criteria for the two categories. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites Bergner et al. 2024

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Both microglia and astrocytes contribute to cuprizone-induced pathology and could influence oligodendrocyte regeneration.

    “Both microglia and astrocytes contribute to cuprizone‐induced pathology and could influence oligodendrocyte regeneration (Vega‐Riquer et al. 2019).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Vega‐Riquer et al. 2019 source

      The ‘Immune System Influence in the CPZ Model’ section (page not provided) says that cytokines from microglia and astrocytes have cytotoxic roles in cuprizone-induced demyelination, supporting their contribution to pathology. It also links astrocytes to reduced myelin synthesis, but does not establish that both cell types influence oligodendrocyte regeneration. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    New oligodendrocytes formed after cessation of the cuprizone-supplemented diet, with a peak rate of formation at 2 weeks post-cuprizone.

    “We found that new oligodendrocytes formed after cessation of the cuprizone‐supplemented diet, with a peak rate of formation at 2 weeks post‐cuprizone (“early” recovery).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source

      The Results sections on inefficient regeneration and layer-specific remyelination report that new oligodendrocytes appeared rapidly after cuprizone cessation and that replacement peaked during the first two weeks of recovery. They do not establish that the peak rate occurred specifically at the two-week time point. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premiseown data

    Oligodendrocyte regeneration in the somatosensory cortex is incomplete, driven primarily by inefficient oligodendrocyte replacement in deep cortical regions.

    “We found that oligodendrocyte regeneration in the somatosensory cortex is incomplete, and this is driven primarily by inefficient oligodendrocyte replacement in deep cortical regions.”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source
  • Classified as probably not a substantial claim.

    Premisecitation

    Both pre-myelinating and early-myelinating oligodendrocytes express BCAS1.

    “Notably, both pre‐myelinating and early‐myelinating oligodendrocytes express BCAS1 (Fard et al. 2017).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Fard et al. 2017 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    CD68 is a lysosomal protein expressed by activated and phagocytosing microglia and macrophages.

    “reactive microglia are commonly identified by upregulation of CD68, a lysosomal protein expressed by activated and phagocytosing microglia and macrophages (Bennett and Viaene 2021).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Bennett and Viaene 2021 source

      Section 1.1, “Microglial activation” (page not available), identifies CD68 as a lysosomal marker that is upregulated in morphologically activated microglia in some pathological contexts, and lists it among macrophage markers. It does not establish that CD68 identifies phagocytosing cells, and its “some pathological contexts” qualifier does not support identifying reactive microglia by CD68 upregulation generally. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    BCAS1 + GFP+ oligodendrocytes represent a relatively more mature differentiating oligodendrocyte state than BCAS1 + GFP- cells.

    “BCAS1 + GFP+ oligodendrocytes should represent a relatively more mature differentiating oligodendrocyte state than BCAS1 + GFP‐ cells (Chapman et al. 2024; Hughes et al. 2018; Orthmann‐Murphy et al. 2020).”
    Quote in the paperSubstantial claim2 of 3 sources checked
    • cites Chapman et al. 2024 source
    • cites Hughes et al. 2018 source

      The Results section, “Oligodendrocyte generation continues in the adult cortex” (page unavailable), says Mobp-EGFP marks oligodendrocytes and that Mobp is expressed late in maturation, supporting the proposed interpretation if GFP denotes Mobp-EGFP. The paper does not compare BCAS1+ GFP+ and BCAS1+ GFP− cells; moreover, its NG2-mEGFP reporter loses fluorescence during differentiation, so the inference depends on which GFP reporter is meant. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites Orthmann‐Murphy et al. 2020 source

      The Materials and methods section describes Mobp-EGFP imaging as following newly formed mature oligodendrocytes, supporting the use of GFP expression as an indicator of maturity in this mouse model. Our copy does not address BCAS1 or compare BCAS1+ GFP+ cells with BCAS1+ GFP− cells, so it does not establish the claimed relative differentiation state. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    In Cx3Cr1-eGFP mice, GFP is expressed by CNS-resident macrophages, which are predominantly represented by microglia.

    “In Cx3Cr1‐eGFP mice, GFP is expressed by CNS‐resident macrophages (Jung et al. 2000), which, as noted above, are predominantly represented by microglia (Zhao et al. 2023).”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites Jung et al. 2000 source
    • cites Zhao et al. 2023 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Deep cortical oligodendrogenesis was selectively impaired, with only ~55% of the baseline oligodendrocyte population replaced after 9 weeks of recovery in the deepest cortical zone examined (200-300 μm).

    “In our prior in vivo imaging study, however, we showed that deep cortical oligodendrogenesis was selectively impaired, with only ~55% of the baseline oligodendrocyte population replaced after 9 weeks of recovery in the deepest cortical zone examined (200–300 μm; Orthmann‐Murphy et al. 2020).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source
  • Classified as probably not a substantial claim.

    Study design and conductcitation

    A blinded observer quantified the number of NG2+, GFAP+, Iba1+, ASPA+, BCAS1+, and GFP+ cells within each region.

    “For cell counts, a blinded observer quantified the number of NG2+, GFAP+, Iba1+, ASPA+, BCAS1+, and GFP+ cells within each 500 μm × 750 μm region using a custom counting macro in FIJI/ImageJ (Orthmann‐Murphy et al. 2020).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source

      The Immunohistochemistry methods (page unavailable) report that a blinded observer counted NG2+, GFAP+, and EGFP+ cells, supporting the core counting procedure. They specify 425 μm × 500 μm regions, not 500 μm × 750 μm regions, and do not report blinded counts of Iba1+, ASPA+, or BCAS1+ cells. The Image processing and analysis methods mention FIJI/ImageJ, but not a custom counting macro for these counts. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    Microglia and astrocytes influence each other's state and function.

    “Given that microglia and astrocytes influence each other's state and function (Matejuk and Ransohoff 2020), we wanted to ensure that cortical astrocyte numbers were not also altered by microglia depletion following demyelination.”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Matejuk and Ransohoff 2020 source
  • Classified as probably not a substantial claim.

    Premisecitation

    In the lysolecithin model of white matter demyelination, microglia can secrete pro-regenerative factors during recovery time points that enable OPC differentiation and oligodendrocyte regeneration.

    “In the lysolecithin model of white matter demyelination, microglia can secrete pro‐regenerative factors during recovery time points that enable OPC differentiation and oligodendrocyte regeneration (Miron et al. 2013).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Miron et al. 2013 source
  • Classified as probably not a substantial claim.

    Premisecitation

    TMEM119 is a canonical microglia marker not expressed by other CNS resident macrophages.

    “we performed in situ RNA labeling for TMEM119, a canonical microglia marker not expressed by other CNS resident macrophages (Bennett et al. 2016).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Bennett et al. 2016 source
  • Classified as probably not a substantial claim.

    Premisecitation

    Microglia within the healthy cortex exhibit spatially heterogeneous gene expression.

    “However, microglia are uniquely attuned to their local environment, and within the healthy cortex exhibit spatially heterogeneous gene expression (Hammond et al. 2019; Paolicelli et al. 2022; Tarozzo et al. 2003).”
    Quote in the paperSubstantial claim1 of 3 sources checked
    • cites Hammond et al. 2019

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites Paolicelli et al. 2022 source

      The “Microglial heterogeneity: It all depends on the context” section says microglia differ in transcriptional profiles among CNS areas and respond to local cues, including without perturbation. It does not specifically establish spatial differences in gene expression within the healthy cortex; its geographic comparison is among CNS areas. No page number is available in our copy. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites Tarozzo et al. 2003 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingcitation

    Deep cortical astrocytes also become persistently reactive.

    “In addition, deep cortical astrocytes also become persistently reactive (Figure S4; Orthmann‐Murphy et al. 2020) and likely influence deep cortical reactive microglia function (Liddelow and Barres 2017).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Orthmann‐Murphy et al. 2020 source
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    In the lysolecithin-induced model of demyelination, Miron et al. (2013) identified a subset of microglia present during the remyelination stage that expressed ARG1 + IGF1 + CD206+; these microglia likely secrete factors that promote OPC differentiation as their conditioned media promoted OPC differentiation in vitro, and their selective depletion in vivo impaired remyelination.

    “For example, using the lysolecithin‐induced model of demyelination, Miron et al. (2013) identified a subset of microglia present during the remyelination stage that expressed ARG1 + IGF1 + CD206+; these microglia likely secrete factors that promote OPC differentiation as their conditioned media promoted OPC differentiation in vitro, and their selective depletion in vivo impaired remyelination.”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Miron et al. 2013 source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Microglia clear myelin debris and influence oligodendrocytes and myelin formation in MS lesions.

    “Accumulating evidence shows that microglia clear myelin debris and influence oligodendrocytes and myelin formation in MS lesions (Irfan et al. 2022; Li and Barres 2018).”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites Irfan et al. 2022 source

      The section “Microglia phagocytose OPCs to regulate myelin formation” says microglia engulf oligodendrocyte progenitor cells and thereby regulate myelin formation during early postnatal development. The “Relevance to disease pathology” section does not establish that they clear myelin debris or have these effects in MS lesions; it says relevance beyond the studied corpus callosum warrants further investigation. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites Li and Barres 2018 source
  • Classified as probably not a substantial claim.

    Premisecitation

    There are more oligodendrocytes in the deep cortex compared to the superficial cortex.

    “For example, there are more oligodendrocytes in the deep cortex compared to the superficial cortex (Hughes et al. 2018).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Hughes et al. 2018 source

      The Results section (page unavailable) says oligodendrocyte density varies by cortical depth, but it does not state that deeper cortex has more oligodendrocytes than superficial cortex. The Discussion (page unavailable) says the analysis was limited to layers I–IV and did not resolve deeper cortical layers. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    In the healthy middle-aged cortex, only 22% of pre-myelinating oligodendrocytes stably integrated into the cortex, and the remaining differentiating cells died.

    “We previously showed in the healthy middle‐aged cortex that only 22% of pre‐myelinating oligodendrocytes stably integrated into the cortex (Hughes et al. 2018), and the remaining differentiating cells died.”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Hughes et al. 2018 source
  • Classified as probably not a substantial claim.

    Premisecitation

    Microglial phagocytosis of OPCs and oligodendrocytes during early postnatal development in white matter limits the number of oligodendrocytes and myelin sheaths formed.

    “In fact, microglial phagocytosis of OPCs and oligodendrocytes during early postnatal development in white matter limits the number of oligodendrocytes and myelin sheaths formed (Nemes‐Baran et al. 2020).”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites Nemes‐Baran et al. 2020 source

      The Results and Discussion (page not available) show that microglia engulf OPCs in the early postnatal corpus callosum and that reduced engulfment increases the number of mature oligodendrocytes. The claim overextends this to phagocytosis of oligodendrocytes as a separate population and to limiting the number of myelin sheaths formed: the paper reports no change in the number of myelinated axons when engulfment is reduced, but thinner myelin. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Microglia are a salient feature of white and gray matter lesions, representing a major part of ongoing compartmentalized inflammation induced by an initial inflammatory attack.

    “Microglia are a salient feature of white and gray matter lesions, representing a major part of ongoing compartmentalized inflammation induced by an initial inflammatory attack (Absinta et al. 2021).”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Absinta et al. 2021 source

      The ‘MIMS and AIMS at the chronic active lesion edge’ section identifies inflamed microglia as a substantial immune-cell population in chronic active white-matter lesions, and Extended Data Fig. 4 describes frequent activated microglia at the lesion edge (page numbers unavailable). The paper does not establish the same finding for gray-matter lesions or show that the ongoing inflammation was induced by an initial inflammatory attack. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    Previous studies of white matter demyelination models showed that reactive microglia can support oligodendrocyte regeneration.

    “Our finding that cortical reactive microglia impair oligodendrocyte differentiation post‐cuprizone is unexpected, as previous studies of white matter demyelination models showed that reactive microglia can support oligodendrocyte regeneration (Baaklini et al. 2023; Miron et al. 2013).”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites Baaklini et al. 2023 source
    • cites Miron et al. 2013 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    Superficial cortical microglia did not decrease P2RY12 expression following cuprizone treatment.

    “Superficial cortical microglia, by comparison, did not decrease P2RY12 expression following cuprizone treatment (Figure S2B).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The reactive changes in deep cortical microglia persist through early recovery and resolve by late recovery.

    “These reactive changes persisted through early recovery post‐cuprizone but resolved by late recovery.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    P2RY12 expression returned to baseline levels by late recovery.

    “This pattern was similarly observed in middle cortical microglia after 4 weeks of cuprizone and through early recovery, and P2RY12 expression returned to baseline levels by late recovery (Figure S2B).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Deep cortical microglia downregulate P2RY12 after 4 weeks of cuprizone, and this downregulation persists through early recovery.

    “After 4 weeks of cuprizone, deep cortical GFP+ microglia downregulated the expression of P2RY12, and this persisted through early recovery (Figure 2C,D).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    After 2 weeks of PLX-3397, there were substantially fewer Iba1+ cortical microglia, but they were not fully eliminated.

    “After 2 weeks, there were substantially fewer Iba1+ cortical microglia, but they were not fully eliminated.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    At early recovery with PLX-3397, there were more cortical BCAS1+ oligodendrocytes in the full cortical region compared to no PLX treatment, with approximately 2-fold more BCAS1+ cells in the PLX-treated deep cortical region.

    “At early recovery with PLX‐3397, there were more cortical BCAS1+ oligodendrocytes in the full cortical region compared to no PLX treatment (17.6 ± 2.03 BCAS1+ cells Early Recovery no PLX mice (n = 5) vs. 30.5 ± 1.68 BCAS1+ cells Early Recovery + PLX‐3397 mice (n = 7), p = 0.0203), with ~2‐fold more BCAS1+ cells in the PLX‐treated deep cortical region (Figure 5A,B).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In the deep cortical region, only 17.9% ± 3.91% of cortical microglia were depleted compared to baseline at early recovery, and then further reduced to 68.8% ± 10.84% of baseline by late recovery.

    “In the deep cortical region, only 17.9% ± 3.91% of cortical microglia were depleted compared to baseline at early recovery, and then further reduced to 68.8% ± 10.84% of baseline by late recovery (Figure 3C).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    In the superficial region, Iba1+ cells were reduced by 90.64% ± 37.32% at early recovery and by 90.22% ± 41.82% at late recovery compared to baseline.

    “In comparison to baseline, Iba1+ cells in the superficial region were reduced by 90.64% ± 37.32% at early recovery, and then by 90.22% ± 41.82% at late recovery (Superficial region, Baseline mice (n = 5) vs. Early Recovery + PLX‐3397 mice (n = 6), p < 0.0001; vs. Late Recovery + PLX‐3397 mice (n = 5), p < 0.0001).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Superficial microglia maintain homeostatic morphology and expression of homeostatic markers P2RY12 and TMEM119.

    “In contrast, superficial microglia maintain homeostatic morphology and expression of homeostatic markers P2RY12 and TMEM119.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Deep cortical microglia adopt a reactive state, characterized by an amoeboid morphology, downregulation of homeostatic markers P2RY12 and TMEM119, and upregulation of CD68; this response persists through early recovery and resolves by late recovery.

    “We found that deep cortical microglia adopt a reactive state, characterized by an amoeboid morphology, downregulation of homeostatic markers P2RY12 and TMEM119, and upregulation of CD68; this response persists through early recovery and resolves by late recovery.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Administration of PLX depleted microglia throughout the cortical region, and we observed more deep cortical ASPA+ oligodendrocytes and BCAS1+ differentiating oligodendrocytes at early recovery, in the same region and time period as the transient deep cortical reactive microglia phenotype.

    “Although administration of PLX depleted microglia throughout the cortical region, we observed more deep cortical ASPA+ oligodendrocytes and BCAS1+ differentiating oligodendrocytes at early recovery (Figures 3 and 5), in the same region and same time period we identified the transient deep cortical reactive microglia phenotype (Figures 2 and S2).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Depleting cortical microglia led to increased numbers of deep cortical BCAS1+ and ASPA+ cells at early recovery, and a few deep cortical reactive microglia survived in PLX-treated mice.

    “Although we found that depleting cortical microglia led to increased numbers of deep cortical BCAS1+ and ASPA+ cells at early recovery, a few deep cortical reactive microglia survived in PLX‐treated mice (Figure 3B,C).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    The mature oligodendrocyte population is reduced after 4 weeks of cuprizone compared to baseline, reaches a nadir at early recovery, and then approaches baseline density by late recovery in the upper somatosensory cortex.

    “By quantifying ASPA+ oligodendrocytes with this updated approach, we confirmed that the mature oligodendrocyte population is reduced after 4 weeks of cuprizone compared to baseline, reaches a nadir at early recovery, and then approaches baseline density by late recovery in the upper somatosensory cortex.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    A blinded observer categorized Iba1+ or GFP+ microglia as either homeostatic or reactive.

    “To quantify changes in microglial morphology, a blinded observer categorized Iba1+ (in Mobp‐eGFP or WT littermates) or GFP+ microglia (in Cx3Cr1‐egfp mice) as either homeostatic (small, circular cell body with ramified processes) or reactive (larger and amoeboid cell body with short and thick processes).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Adult mice of both sexes were randomly assigned to experimental groups.

    “Adult mice of both sexes were used for experiments and randomly assigned to experimental groups.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    Homeostatic microglia typically have a small circular cell body and ramified processes, whereas reactive microglia typically have larger cell bodies with an amoeboid shape and short, thick processes.

    “Homeostatic microglia typically have a small circular cell body and ramified processes, whereas in the setting of injury, reactive microglia typically have larger cell bodies with an amoeboid shape and short, thick processes (Woodburn et al. 2021).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Woodburn et al. 2021

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    All animal experiments were performed in strict accordance with protocols approved by the Institution of Animal Care and Use Committee at the University of Pennsylvania.

    “All animal experiments were performed in strict accordance with protocols approved by the Institution of Animal Care and Use Committee at the University of Pennsylvania (Philadelphia, PA).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    No animals were excluded from the analysis.

    “All mice were healthy and did not display any overt behavioral phenotypes, and no animals were excluded from the analysis.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    BCAS1+ cells die by a caspase-3 dependent mechanism.

    “Most of these differentiating cells likely died by apoptosis; BCAS1+ cells were recently shown to die by a caspase‐3 dependent mechanism (Chapman et al. 2024).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Chapman et al. 2024 source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    The long-term consequence of demyelination in the CNS is axonal damage and neurodegeneration in both white and gray matter lesions, leading to progressive disease.

    “The long‐term consequence of demyelination in the CNS is axonal damage and neurodegeneration (Chang et al. 2002) in both white and gray matter lesions, leading to progressive disease.”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Chang et al. 2002 source
  • May combine two claims.

    Interpretationown data

    The majority of BCAS1+ cells appear to be healthy at early recovery in PLX-treated mice and could mature into ASPA+ oligodendrocytes.

    “Although we would not expect all BCAS1+ cells to survive based on prior studies, the majority of BCAS1+ cells appear to be healthy at early recovery in PLX‐treated mice and could mature into ASPA+ oligodendrocytes.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Interpretationreasoning

    Following cuprizone-induced demyelination, deep cortical microglia will be exposed to relatively more myelin debris than superficial microglia, potentially inducing different reactive responses.

    “Following cuprizone‐induced demyelination, deep cortical microglia will be exposed to relatively more myelin debris than superficial microglia, potentially inducing different reactive responses.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S2 (checkable).

    Interpretationreasoning

    Targeting specific reactive microglia functions at key time-points to promote oligodendrocyte regeneration could prevent axonal damage and progressive disease in MS.

    “Ultimately, targeting specific reactive microglia functions at key time‐points to promote oligodendrocyte regeneration could prevent axonal damage and progressive disease in MS.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Premisecitation

    Microglia depletion after lysophosphatidylcholine-induced spinal cord demyelination led to reduced OPC recruitment, proliferation, and differentiation.

    “Similarly, Baaklini et al. (2023) showed that microglia depletion after lysophosphatidylcholine‐induced spinal cord demyelination led to reduced OPC recruitment, proliferation, and differentiation.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites Baaklini et al. 2023 source
  • May combine two claims. The quote only partly states this claim.

    Interpretationown data

    Depleting microglia after cuprizone treatment leads to higher numbers of deep cortical pre-myelinating BCAS1+ oligodendrocytes, thereby forming a larger available pool of differentiating oligodendrocytes during recovery from demyelination.

    “Our findings indicate that the depletion of cortical reactive microglia post‐cuprizone increased the available pool of early differentiating BCAS1+ cells.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationcitation

    Deep cortical reactive astrocytes likely influence deep cortical reactive microglia function.

    “In addition, deep cortical astrocytes also become persistently reactive (Figure S4; Orthmann‐Murphy et al. 2020) and likely influence deep cortical reactive microglia function (Liddelow and Barres 2017).”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites Liddelow and Barres 2017

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S4 (based). May combine two claims.

    Interpretationnone given

    Neither pre-existing nor dying oligodendrocytes would be expected to express BCAS1+.

    “However, neither pre‐existing nor dying oligodendrocytes would be expected to express BCAS1+.”
    Quote in the paperNot a substantial claim
53 of 53
  • The paper relies on this without support.

    ASPA+ cells in the cortex represent mature oligodendrocytes.

    “For cell counts, a blinded observer quantified the number of NG2+, GFAP+, Iba1+, ASPA+, BCAS1+, and GFP+ cells within each 500 μm × 750 μm region using a custom counting macro in FIJI/ImageJ (Orthmann‐Murphy et al. 2020).”
  • The paper relies on this without support.

    Depletion of microglia with a Csf1r inhibitor during recovery does not directly affect oligodendrocytes or oligodendrocyte precursor cells.

    “To determine whether deep cortical reactive microglia impair oligodendrocyte regeneration, we fed WT (Mobp‐eGFP or WT littermates) mice chow supplemented with Csf1r inhibitor PLX‐3397 (Elmore et al. 2014) to deplete microglia following cuprizone administration (Figure 3A).”
  • The paper relies on this without support.

    The reactive markers and morphology changes observed in deep cortical microglia indicate a functional state that can impair oligodendrocyte regeneration.

    “Overall, we observed a spatially heterogeneous cortical reactive microglia response to demyelination, where deep cortical microglia changed morphology, downregulated homeostatic markers P2RY12 and TMEM119, and upregulated CD68, and this response persisted through early recovery.”
  • The paper relies on this without support.

    There are currently no available reparative treatments to fix demyelinated lesions in multiple sclerosis.

    “There are currently no available reparative treatments to fix demyelinated lesions in multiple sclerosis (MS).”
  • The paper relies on this without support.

    Prior to this study, it was not known whether cortical microglia promote or impair oligodendrocyte recovery after cortical demyelination.

    “Although there is a growing understanding of the diverse reactive states and functions that microglia adopt in response to CNS damage (Tan et al. 2020), prior to this study, it was not known whether cortical microglia promote or impair oligodendrocyte recovery after cortical demyelination.”
5 of 5

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Figure 3 gives conflicting inhibitor names

    Minor

    The Figure 3 caption calls the administered inhibitor PLX‐3977 in its experimental paradigm, but identifies the treated group as receiving PLX‐3397 in the same caption.

  • Second Csf1r inhibitor has two different names

    Minor

    The Methods identify the second inhibitor as PLX‐5562, while the Results identify it as PLX‐5622. The text does not establish whether these are the same treatment.

2 of 2

Cites

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Authors
Loo, H. K., Gallegos, J., Mialki, C., Perrin, G. E., Malloy, T., & Orthmann‐Murphy, J. L.
Affiliations
University of Pennsylvania (US)
Corresponding author
Orthmann‐Murphy, Jennifer L.
Venue
Glia
Publisher
Wiley
Published
2026-01-08
Volume
74
Issue
3
Pages
e70120-e70120
ISSN
  • 0894-1491 (ISSN-L)
  • 1098-1136
OpenAlex
W7119538417
Cited by
2
References
33
Citations by year
2026: 2
FWCI
9.11
Type
journal article
Language
en
Open access
Locations
  • Glia (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by)
Funders
  • National Institute of Neurological Disorders and Stroke (R01NS132793)
  • National Multiple Sclerosis Society (RG‐2207‐40022)
Topics
  • Health Sciences › Medicine › Pathology and Forensic Medicine › Multiple Sclerosis Research Studies
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
  • Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
Keywords
microglia depletion, oligodendrocyte regeneration, cuprizone-induced demyelination, multiple sclerosis, reactive microglia, CSF1R inhibitor, oligodendrocyte differentiation, BCAS1, aspartoacylase, CD68
MeSH terms
Remyelination, Animals, Cell Count, Cerebral Cortex, Cuprizone, Demyelinating Diseases, Disease Models, Animal, Female, Male, Mice, Inbred C57BL, Oligodendroglia, Receptors, Granulocyte-Macrophage Colony-Stimulating Factor, Microglia, Mice

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-13.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-13.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

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