Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes
Open accessAbstract
The emergence and rapid spread of antimicrobial resistance is of global public health concern. The gut microbiota harboring diverse commensal and opportunistic bacteria that can acquire resistance via horizontal and vertical gene transfers is considered an important reservoir and sink of antibiotic resistance genes (ARGs). In this review, we describe the reservoirs of gut ARGs and their dynamics in both animals and humans, use the One Health perspective to track the transmission of ARG-containing bacteria between humans, animals, and the environment, and assess the impact of antimicrobial resistance on human health and socioeconomic development. The gut resistome can evolve in an environment subject to various selective pressures, including antibiotic administration and environmental and lifestyle factors (e.g., diet, age, gender, and living conditions), and interventions through probiotics. Strategies to reduce the abundance of clinically relevant antibiotic-resistant bacteria and their resistance determinants in various environmental niches are needed to ensure the mitigation of acquired antibiotic resistance. With the help of effective measures taken at the national, local, personal, and intestinal management, it will also result in preventing or minimizing the spread of infectious diseases. This review aims to improve our understanding of the correlations between intestinal microbiota and antimicrobial resistance and provide a basis for the development of management strategies to mitigate the antimicrobial resistance crisis.
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Urbanized diets, antibiotic overuse, and environmental pollution contribute to declining microbial diversity and the rise of metabolic and autoimmune disorders.
“In contrast, urbanized diets, antibiotic overuse, and environmental pollution contribute to declining microbial diversity and the rise of metabolic and autoimmune disorders [7,101,102,103,104,105,106,107].”
From The Power of Environment: A Comprehensive Review of the Exposome's Role in Healthy Aging, Longevity, and Preventive Medicine-Lessons from Blue Zones and Cilento (2025) · cites this paper as [107]
The Introduction (page unavailable) says antibiotics can alter gut microbiota and that reduced microbial diversity can harm health. The disease section links early-life antibiotic exposure potentially to diabetes, and the diet section reports altered microbial diversity with high-fat diets in mice. The paper does not establish the broader claim that urbanized diets, antibiotic overuse, and environmental pollution together cause declining diversity and rising metabolic and autoimmune disorders. (LLM, conf=0.85)
Experimental — accuracy not yet measuredTraditional diets such as the Okinawa diet-high in vegetables, soy, and fish-are associated with diverse gut microbiota and reduced chronic disease risk.
“Similarly, traditional diets such as the Okinawa diet—high in vegetables, soy, and fish—are associated with diverse gut microbiota and reduced chronic disease risk.”
From The Power of Environment: A Comprehensive Review of the Exposome's Role in Healthy Aging, Longevity, and Preventive Medicine-Lessons from Blue Zones and Cilento (2025) · cites this paper as [107]
The ‘Personal measures to alleviate antimicrobial resistance burden’ section (page unavailable) says long-term diet influences gut microbiome composition and that a balanced diet supports overall health. It does not discuss the Okinawa diet, its ingredients, greater gut microbiota diversity, or an association with reduced chronic disease risk. The ‘Impact of diet on the emergence of ARGs’ section addresses dietary effects on antibiotic resistance rather than those specific outcomes. (LLM, conf=0.81)
Experimental — accuracy not yet measuredThe Mediterranean diet promotes beneficial bacterial growth while reducing inflammation and metabolic disorders.
“The Mediterranean diet, rich in fiber, polyphenols, and monounsaturated fats, exemplifies a microbiome-friendly dietary pattern. It promotes beneficial bacterial growth while reducing inflammation and metabolic disorders.”
From The Power of Environment: A Comprehensive Review of the Exposome's Role in Healthy Aging, Longevity, and Preventive Medicine-Lessons from Blue Zones and Cilento (2025) · cites this paper as [107]
The 'Impact of diet on the emergence of ARGs' section links higher fiber intake to changes in gut bacteria and lower antibiotic-resistance gene abundance, but does not discuss the Mediterranean diet or show reductions in inflammation or metabolic disorders. Searches for 'Mediterranean diet' and for polyphenols, monounsaturated fats, inflammation, and metabolic disorders found no passage addressing the attributed claim. Page numbers were not available in our copy. (LLM, conf=0.74)
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Cites
Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis
Murray, C. J. L., Ikuta, K. S., Sharara, F., Swetschinski, L., Robles Aguilar, G., Gray, A., Han, C., Bisignano, C., Rao, P., Wool, E., et al. (2022) · The Lancet · doi:10.1016/s0140-6736(21)02724-0 · Cited by 16,316 · see citing works
Liu, Y.-Y., Wang, Y., Walsh, T., Yi, L.-X., Zhang, R., Spencer, J., Doi, Y., Tian, G.-B., Dong, B.-L., Huang, X.-H., et al. (2016) · Lancet. Infectious Diseases (Print) · doi:10.1016/s1473-3099(15)00424-7 · Cited by 4,920 · see citing works
Self-citationGut microbiota in human metabolic health and disease
Fan, Y., & Pedersen, O. (2021) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0433-9 · Cited by 4,724 · see citing works
The antibiotic resistance crisis: part 1: causes and threats.
Ventola, C. L. (2015) · PubMed Central · Cited by 4,558 · see citing works
Diverse and abundant antibiotic resistance genes in Chinese swine farms
Zhu, Y., Johnson, T. A., Su, J.-Q., Qiao, M., Guo, G.-X., Stedtfeld, R. D., Hashsham, S. A., & Tiedje, J. M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1222743110 · Cited by 2,441 · see citing works
Self-citationAntibiotics: past, present and future
Hutchings, M. I., Truman, A. W., & Wilkinson, B. M. (2019) · Current Opinion in Microbiology · doi:10.1016/j.mib.2019.10.008 · Cited by 2,391 · see citing works
Food Animals and Antimicrobials: Impacts on Human Health
Marshall, B. M., & Levy, S. B. (2011) · Clinical Microbiology Reviews · doi:10.1128/cmr.00002-11 · Cited by 2,241 · see citing works
<p>Antimicrobial Resistance: Implications and Costs</p>
Dadgostar, P. (2019) · Infection and Drug Resistance · doi:10.2147/idr.s234610 · Cited by 2,024 · see citing works
Sampling the Antibiotic Resistome
D'Costa, V. M., McGrann, K. M., Hughes, D. W., & Wright, G. D. (2006) · Science · doi:10.1126/science.1120800 · Cited by 1,594 · see citing works
The central nervous system and the gut microbiome
Sharon, G., Sampson, T. R., Geschwind, D. H., & Mazmanian, S. K. (2016) · Cell · doi:10.1016/j.cell.2016.10.027 · Cited by 1,513 · see citing works
Molecular mechanisms of antibiotic resistance revisited
Darby, E. M., Trampari, E., Siasat, P., Gaya, M. S., Alav, I., Webber, M. A., & Blair, J. M. A. (2023) · Nature Reviews Microbiology · doi:10.1038/s41579-022-00820-y · Cited by 1,398 · see citing works
A new genomic blueprint of the human gut microbiota
Almeida, A., Mitchell, A. L., Boland, M., Forster, S. C., Gloor, G. B., Tarkowska, A., Lawley, T. D., & Finn, R. D. (2019) · Nature · doi:10.1038/s41586-019-0965-1 · Cited by 1,314 · see citing works
In-feed antibiotic effects on the swine intestinal microbiome
Looft, T., Johnson, T. A., Allen, H. K., Bayles, D. O., Alt, D. P., Stedtfeld, R. D., Sul, W. J., Stedtfeld, T. M., Chai, B., Cole, J. R., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1120238109 · Cited by 1,072 · see citing works
Self-citationEcology drives a global network of gene exchange connecting the human microbiome
Smillie, C. S., Smith, M. B., Friedman, J., Cordero, O. X., David, L. A., & Alm, E. J. (2011) · Nature · doi:10.1038/nature10571 · Cited by 953 · see citing works
Wang, J., Chu, L., Wojnárovits, L., & Takács, E. (2020) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.140997 · Cited by 903 · see citing works
Global antibiotic consumption and usage in humans, 2000–18: a spatial modelling study
Browne, A. J., Chipeta, M. G., Haines-Woodhouse, G., Kumaran, E. P. A., Hamadani, B. H. K., Zaraa, S., Henry, N. J., Deshpande, A., Reiner, R. C., Day, N. P. J., et al. (2021) · The Lancet Planetary Health · doi:10.1016/s2542-5196(21)00280-1 · Cited by 865 · see citing works
Baur, D., Gladstone, B. P., Burkert, F. R., Carrara, E., Foschi, F., Döbele, S., & Tacconelli, E. (2017) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(17)30325-0 · Cited by 859 · see citing works
Drug combinations: a strategy to extend the life of antibiotics in the 21st century
Tyers, M., & Wright, G. D. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-018-0141-x · Cited by 825 · see citing works
Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
Hu, Y., Yang, X., Qin, J., Lü, N., Cheng, G., Wu, N., Pan, Y., Li, J., Zhu, L., Wang, X., et al. (2013) · Nature Communications · doi:10.1038/ncomms3151 · Cited by 786 · see citing works
Antibiotic Resistance in the Food Chain: A Developing Country-Perspective
Founou, L. L., Founou, R. C., & Essack, S. Y. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01881 · Cited by 737 · see citing works
Founou, R. C., Founou, L. L., & Essack, S. Y. (2017) · PLoS ONE · doi:10.1371/journal.pone.0189621 · Cited by 714 · see citing works
Pärnänen, K. M. M., Karkman, A., Hultman, J., Lyra, C., Bengtsson‐Palme, J., Larsson, D. G. J., Rautava, S., Isolauri, E., Salminen, S., Kumar, H., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-06393-w · Cited by 682 · see citing works
Self-citationYoungster, I., Russell, G. H., Pindar, C., Ziv-Baran, T., Sauk, J., & Hohmann, E. L. (2014) · JAMA · doi:10.1001/jama.2014.13875 · Cited by 629 · see citing works
Interconnected microbiomes and resistomes in low-income human habitats
Pehrsson, E. C., Tsukayama, P., Patel, S., Mejía-Bautista, M., Sosa-Soto, G., Navarrete, K. M., Calderon, M., Cabrera, L., Hoyos-Arango, W., Bertoli, M. T., et al. (2016) · Nature · doi:10.1038/nature17672 · Cited by 607 · see citing works
Pulingam, T., Parumasivam, T., Gazzali, A. M., Sulaiman, A. M., Chee, J. Y., Lakshmanan, M., Chin, C. F., & Sudesh, K. (2021) · European Journal of Pharmaceutical Sciences · doi:10.1016/j.ejps.2021.106103 · Cited by 591 · see citing works
Aberrant gut microbiota alters host metabolome and impacts renal failure in humans and rodents
Wang, X., Yang, S., Li, S., Zhao, L., Hao, Y., Qin, J., Zhang, L., Zhang, C., Bian, W., Zuo, L., et al. (2020) · Gut · doi:10.1136/gutjnl-2019-319766 · Cited by 542 · see citing works
Antibiotic resistance in drinking water systems: Occurrence, removal, and human health risks
Sanganyado, E., & Gwenzi, W. (2019) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2019.03.162 · Cited by 505 · see citing works
Antibiotic resistance in wastewater treatment plants: Tackling the black box.
Manaia, C., Rocha, J., Scaccia, N., Marano, R., Radu, E., Biancullo, F., Cerqueira, F., Fortunato, G., Iakovides, I. C., Zammit, I., et al. (2018) · Environment International · doi:10.1016/j.envint.2018.03.044 · Cited by 449 · see citing works
Antibiotic Resistomes in Plant Microbiomes
Chen, Q., Cui, H.-L., Su, J.-Q., Peñuelas, J., & Zhu, Y. (2019) · Trends in Plant Science · doi:10.1016/j.tplants.2019.02.010 · Cited by 392 · see citing works
Self-citationKim, D., & Cha, C. (2021) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00569-z · Cited by 357 · see citing works
Patterns of antibiotic use in global pig production: A systematic review
Lekagul, A., Tangcharoensathien, V., & Yeung, S. (2019) · Veterinary and Animal Science · doi:10.1016/j.vas.2019.100058 · Cited by 354 · see citing works
Live biotherapeutic products: The importance of a defined regulatory framework
Cordaillat-Simmons, M., Rouanet, A., & Pot, B. (2020) · Experimental & Molecular Medicine · doi:10.1038/s12276-020-0437-6 · Cited by 328 · see citing works
Sorbara, M. T., & Pamer, E. G. (2018) · Mucosal Immunology · doi:10.1038/s41385-018-0053-0 · Cited by 325 · see citing works
Soil biota, antimicrobial resistance and planetary health
Zhu, Y., Zhao, Y., Zhu, D., Gillings, M. R., Peñuelas, J., Ok, Y. S., Capon, A. G., & Banwart, S. A. (2019) · Environment International · doi:10.1016/j.envint.2019.105059 · Cited by 317 · see citing works
Self-citationXu, L., Ouyang, W.-Y., Qian, Y., Su, C., Su, J., & Hong, C. (2016) · Environmental Pollution · doi:10.1016/j.envpol.2016.02.013 · Cited by 315 · see citing works
Antibiotic resistome in the livestock and aquaculture industries: Status and solutions
Zhao, Y., Yang, Q., Zhou, X., Wang, F., Muurinen, J., Virta, M., Brandt, K. K., & Zhu, Y. (2020) · Critical Reviews in Environmental Science and Technology · doi:10.1080/10643389.2020.1777815 · Cited by 302 · see citing works
Self-citationEnvironmental remodeling of human gut microbiota and antibiotic resistome in livestock farms
Sun, J. G., Liao, X., D’Souza, A. W., Boolchandani, M., Li, S., Cheng, K., Martínez, J. L., Li, L., Feng, Y.-J., Fang, L., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-15222-y · Cited by 280 · see citing works
Metagenomics-enabled microbial surveillance
Ko, K. K. K., Chng, K. R., & Nagarajan, N. (2022) · Nature Microbiology · doi:10.1038/s41564-022-01089-w · Cited by 280 · see citing works
Mobarki, N., Almerabi, B., & Hattan, A. (2019) · International Journal of Medicine in Developing Countries · doi:10.24911/ijmdc.51-1549060699 · Cited by 269 · see citing works
Strategies to Prevent Healthcare-Associated Infections: A Narrative Overview
Haque, M., McKimm, J., Sartelli, M., Dhingra, S., Labricciosa, F. M., Islam, S., Jahan, D., Nusrat, T., Chowdhury, T. S., Coccolini, F., et al. (2020) · Risk Management and Healthcare Policy · doi:10.2147/rmhp.s269315 · Cited by 260 · see citing works
Montassier, E., Valdés-Mas, R., Batard, E., Zmora, N., Dori-Bachash, M., Suez, J., & Elinav, E. (2021) · Nature Microbiology · doi:10.1038/s41564-021-00920-0 · Cited by 256 · see citing works
Rationalizing antibiotic use to limit antibiotic resistance in India.
Ganguly, N. K., Arora, N. K., Chandy, S. J., Fairoze, M. N., Gill, J. P. S., Gupta, U., Hossain, S., Joglekar, S. J., Joshi, P. C., Kakkar, M., et al. (2011) · Europe PMC (PubMed Central) · Cited by 245 · see citing works
Tacconelli, E., Mazzaferri, F., de Smet, A. M. G. A., Bragantini, D., Eggimann, P., Huttner, B. D., Kuijper, E. J., Lucet, J. C., Mutters, N. T., Sanguinetti, M., et al. (2019) · Clinical Microbiology and Infection · doi:10.1016/j.cmi.2019.01.005 · Cited by 236 · see citing works
Multimodal interactions of drugs, natural compounds and pollutants with the gut microbiota
Lindell, A. E., Zimmermann‐Kogadeeva, M., & Patil, K. R. (2022) · Nature Reviews Microbiology · doi:10.1038/s41579-022-00681-5 · Cited by 232 · see citing works
Gut microbiome alterations in high-fat-diet-fed mice are associated with antibiotic tolerance
Liu, Y., Yang, K., Jia, Y., Shi, J., Tong, Z., Fang, D., Yang, B., Su, C., Li, R., Xiao, X., et al. (2021) · Nature Microbiology · doi:10.1038/s41564-021-00912-0 · Cited by 227 · see citing works
Antibiotic drug-resistance as a complex system driven by socio-economic growth and antibiotic misuse
Malik, B., & Bhattacharyya, S. K. (2019) · Scientific Reports · doi:10.1038/s41598-019-46078-y · Cited by 221 · see citing works
Millan, B., Park, H., Hotte, N., Mathieu, O., Burguière, P., Tompkins, T. A., Kao, D. H., & Madsen, K. L. (2016) · Clinical Infectious Diseases · doi:10.1093/cid/ciw185 · Cited by 218 · see citing works
de With, K., Allerberger, F. J., Amann, S., Apfalter, P., Brodt, H.-R., Eckmanns, T., Fellhauer, M., Geiss, H. K., Janata, O., Krause, R. G. E., et al. (2016) · Infection · doi:10.1007/s15010-016-0885-z · Cited by 217 · see citing works
Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles
Sinha, T., Vich Vila, A., Garmaeva, S., Jankipersadsing, S. A., Imhann, F., Collij, V., Bonder, M. J., Jiang, X., Gurry, T., Alm, E. J., et al. (2019) · Gut Microbes · doi:10.1080/19490976.2018.1528822 · Cited by 208 · see citing works
Self-citationAir pollution could drive global dissemination of antibiotic resistance genes
Zhu, G., Wang, X., Yang, T., Su, J., Qin, Y., Wang, S., Gillings, M. R., Wang, C., Ju, F., Lan, B., et al. (2020) · The ISME Journal · doi:10.1038/s41396-020-00780-2 · Cited by 204 · see citing works
Self-citationZhang, L., Huang, Y., Zhou, Y., Buckley, T., & Wang, H. H. (2013) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00670-13 · Cited by 203 · see citing works
Microbial dark matter coming to light: challenges and opportunities
Jiao, J., Liu, L., Hua, Z., Fang, B., Zhou, E., Salam, N., Hedlund, B. P., & Li, W. (2020) · National Science Review · doi:10.1093/nsr/nwaa280 · Cited by 203 · see citing works
Zhao, H.-Y., Wei, L., Li, H., Zhang, M., Cao, B., Bian, J., & Zhan, S. (2021) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(20)30596-x · Cited by 191 · see citing works
Self-citationBengtsson‐Palme, J., Abramova, A., Berendonk, T. U., Coelho, L. P., Forslund, S. K., Gschwind, R., Heikinheimo, A., Jarquín‐Díaz, V. H., Khan, A., Klümper, U., et al. (2023) · Environment International · doi:10.1016/j.envint.2023.108089 · Cited by 190 · see citing works
Gender differences in antibiotic prescribing in the community: a systematic review and meta-analysis
Schröder, W., Sommer, H., Gladstone, B. P., Foschi, F., Hellman, J., Evengård, B., & Tacconelli, E. (2016) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkw054 · Cited by 179 · see citing works
Li, L.-G., Huang, Q., Yin, X., & Zhang, T. (2020) · Water Research · doi:10.1016/j.watres.2020.116127 · Cited by 178 · see citing works
Self-citationA critical review of antibiotic resistance in probiotic bacteria
Li, T., Teng, D., Mao, R., Hao, Y., Wang, X., & Wang, J. (2020) · Food Research International · doi:10.1016/j.foodres.2020.109571 · Cited by 172 · see citing works
The Gut Microbiome as a Reservoir for Antimicrobial Resistance
Anthony, W., Burnham, C. D., Dantas, G. A., & Kwon, J. H. (2020) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiaa497 · Cited by 171 · see citing works
Recent developments in probiotics: An emphasis on Bifidobacterium
Sharma, M., Wasan, A., & Sharma, R. K. (2021) · Food Bioscience · doi:10.1016/j.fbio.2021.100993 · Cited by 169 · see citing works
Antibiotic Resistance Genes in the Human-Impacted Environment: A One Health Perspective
Tiedje, J. M., Wang, F., Manaia, C. M., Virta, M., Sheng, H., Ma, L., Zhang, T., & Topp, E. (2019) · Pedosphere · doi:10.1016/s1002-0160(18)60062-1 · Cited by 167 · see citing works
Self-citationAntibiotic resistance in the soil ecosystem: A One Health perspective
Wang, F., Fu, Y., Sheng, H., Topp, E., Jiang, X., Zhu, Y., & Tiedje, J. M. (2021) · Current Opinion in Environmental Science & Health · doi:10.1016/j.coesh.2021.100230 · Cited by 165 · see citing works
Self-citationBechthold, A., Boeing, H., Tetens, I., Schwingshackl, L., & Nöthlings, U. (2018) · Advances in Nutrition · doi:10.1093/advances/nmy033 · Cited by 160 · see citing works
Hu, Y., Jiang, L., Zhang, T., Jin, L., Han, Q., Zhang, D., Lin, K., & Cui, C. (2018) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2018.08.012 · Cited by 160 · see citing works
Self-citationCheng, D., Yao, F., Liu, Y., Xue, J., & Li, Z. S. (2018) · Journal of Environmental Management · doi:10.1016/j.jenvman.2018.09.074 · Cited by 153 · see citing works
Strategies to Combat Antimicrobial Resistance
Swami, O. C. (2014) · JOURNAL OF CLINICAL AND DIAGNOSTIC RESEARCH · doi:10.7860/jcdr/2014/8925.4529 · Cited by 149 · see citing works
The impact of nutrition on intestinal bacterial communities
Flint, H. J., Duncan, S. H., & Louis, P. (2017) · Current Opinion in Microbiology · doi:10.1016/j.mib.2017.04.005 · Cited by 149 · see citing works
Wang, Q., Duan, Y., Wang, S., Wang, L., Hou, Z., Cui, Y., Hou, J., Das, R., Mao, D., & Luo, Y. (2019) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2019.121129 · Cited by 147 · see citing works
Joosten, P., Ceccarelli, D., Odent, E., Sarrazin, S., Graveland, H., Gompel, L. V., Battisti, A., Caprioli, A., Franco, A., Wagenaar, J. A., et al. (2020) · Antibiotics · doi:10.3390/antibiotics9020087 · Cited by 136 · see citing works
Miłobędzka, A., Ferreira, C., Vaz‐Moreira, I., Calderón-Franco, D., Gόrecki, A., Purkrtová, S., Bartáček, J., Dziewit, Ł., Singleton, C. M., Nielsen, P. H., et al. (2021) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2021.127407 · Cited by 135 · see citing works
Campbell, T., Sun, X., Patel, V. H., Sanz, C., Morgan, D., & Dantas, G. A. (2020) · The ISME Journal · doi:10.1038/s41396-020-0634-2 · Cited by 131 · see citing works
A one-health approach to antimicrobial resistance
Walsh, T. R. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0208-5 · Cited by 131 · see citing works
Gut Microbiome Toxicity: Connecting the Environment and Gut Microbiome-Associated Diseases
Tu, P., Chi, L., Bodnar, W. M., Zhang, Z., Gao, B., Bian, X., Stewart, J. R., Fry, R. C., & Lü, K. (2020) · Toxics · doi:10.3390/toxics8010019 · Cited by 130 · see citing works
Human microbiomes and antibiotic resistance
Baron, S. A., Diene, S. M., & Rolain, J. (2018) · Human Microbiome Journal · doi:10.1016/j.humic.2018.08.005 · Cited by 128 · see citing works
Critical insights into antibiotic resistance transferability in probiotic Lactobacillus
Das, D. J., Shankar, A., Johnson, J. B., & Thomas, S. (2019) · Nutrition · doi:10.1016/j.nut.2019.110567 · Cited by 126 · see citing works
Wild small mammals as sentinels for the environmental transmission of antimicrobial resistance
Furness, L. E., Campbell, A. M., Zhang, L., Gaze, W. H., & McDonald, R. A. (2016) · Environmental Research · doi:10.1016/j.envres.2016.12.014 · Cited by 120 · see citing works
Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)
Guo, W., Mishra, S., Wang, C., Zhang, H., Ning, R., Kong, F., Zeng, B., Zhao, J., & Li, Y. (2019) · Genes · doi:10.3390/genes10100827 · Cited by 119 · see citing works
Zhou, X., Qiao, M., Su, J., Wang, Y., Cao, Z., Cheng, W., & Zhu, Y. (2018) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2018.08.368 · Cited by 114 · see citing works
Self-citationAntibiotic resistance in the commensal human gut microbiota
Lamberte, L. E., & van Schaik, W. (2022) · Current Opinion in Microbiology · doi:10.1016/j.mib.2022.102150 · Cited by 114 · see citing works
Woodworth, M. H., Conrad, R. E., Haldopoulos, M. E., Pouch, S. M., Babiker, A., Mehta, A. K., Sitchenko, K. L., Wang, C. H., Strudwick, A. F., Ingersoll, J., et al. (2023) · Science Translational Medicine · doi:10.1126/scitranslmed.abo2750 · Cited by 114 · see citing works
Association of Diet and Antimicrobial Resistance in Healthy U.S. Adults
Oliver, A. S., Xue, Z., Villanueva, Y., Durbin-Johnson, B. P., Alkan, Z., Taft, D. H., Liu, J., Korf, I. F., Laugero, K. D., Stephensen, C. B., et al. (2022) · mBio · doi:10.1128/mbio.00101-22 · Cited by 103 · see citing works
Antimicrobial resistance in Antarctica: is it still a pristine environment?
Hwengwere, K., Nair, H. P., Hughes, K. A., Peck, L. S., Clark, M. S., & Walker, C. A. (2022) · Microbiome · doi:10.1186/s40168-022-01250-x · Cited by 100 · see citing works
Pärnänen, K. M., Hultman, J., Markkanen, M., Satokari, R., Rautava, S., Lamendella, R., Wright, J., McLimans, C. J., Kelleher, S. L., & Virta, M. P. (2022) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqab353 · Cited by 99 · see citing works
Self-citationHigh dietary zinc feeding promotes persistence of multi-resistant E. coli in the swine gut
Ciesinski, L., Guenther, S., Pieper, R., Kalisch, M., Bednorz, C., & Wieler, L. H. (2018) · PLoS ONE · doi:10.1371/journal.pone.0191660 · Cited by 96 · see citing works
Intestinal microbiota and antibiotic resistance: Perspectives and solutions
Casals‐Pascual, C., Vergara, A., & Vilà, J. (2018) · Human Microbiome Journal · doi:10.1016/j.humic.2018.05.002 · Cited by 93 · see citing works
Antibiotic resistance propagation through probiotics
Daniali, M., Nikfar, S., & Abdollahi, M. (2020) · Expert Opinion on Drug Metabolism & Toxicology · doi:10.1080/17425255.2020.1825682 · Cited by 90 · see citing works
Mughini-Gras, L., Dorado-García, A., van Duijkeren, E., van den Bunt, G., Dierikx, C., Bonten, M., Bootsma, M., Schmitt, H., Hald, T., Evers, E. G., et al. (2019) · Lancet Planetary Health · doi:10.1016/s2542-5196(19)30130-5 · Cited by 87 · see citing works
Delivery of antibiotics to the respiratory tract: an update
Traini, D., & Young, P. M. (2009) · Expert Opinion on Drug Delivery · doi:10.1517/17425240903110710 · Cited by 86 · see citing works
Lu, N., Hu, Y., Zhu, L., Yang, X., Yin, Y., Lei, F., Zhu, Y., Du, Q., Wang, X., Meng, Z., et al. (2014) · Scientific Reports · doi:10.1038/srep04302 · Cited by 84 · see citing works
Chen, Y., Liu, Z., Zhang, Y., Zhang, Z., Lei, L., & Xia, Z. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02852 · Cited by 82 · see citing works
Zeineldin, M. M., Aldridge, B. M., & Lowe, J. F. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01035 · Cited by 77 · see citing works
Antibiotic resistance genes in different animal manures and their derived organic fertilizer
Xu, Y., Li, H., Shi, R., Lv, J., Li, B., Yang, F., Zheng, X., & Xu, J. F. (2020) · Environmental Sciences Europe · doi:10.1186/s12302-020-00381-y · Cited by 74 · see citing works
Self-citationHuman Gut Antibiotic Resistome and Progression of Diabetes
Shuai, M., Zhang, G., Zeng, F., Fu, Y., Liang, X., Yuan, L., Xu, F., Gou, W., Miao, Z., Jiang, Z., et al. (2022) · Advanced Science · doi:10.1002/advs.202104965 · Cited by 74 · see citing works
Self-citationImpact of Antibiotic Resistance Genes in Gut Microbiome of Patients With Cirrhosis
Shamsaddini, A., Gillevet, P. M., Acharya, C., Fagan, A., Gavis, E. A., Sikaroodi, M., McGeorge, S., Khoruts, A., Albhaisi, S. A. M., Fuchs, M. A., et al. (2021) · Gastroenterology · doi:10.1053/j.gastro.2021.04.013 · Cited by 72 · see citing works
Ramay, B. M., Caudell, M. A., Cordón‐Rosales, C., Archila, L. D., Palmer, G. H., Jarquín, C., Moreno, P., McCracken, J. P., Rosenkrantz, L., Amram, O., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-70741-4 · Cited by 70 · see citing works
Muurinen, J., Richert, J. A., Wickware, C. L., Richert, B. T., & Johnson, T. A. (2021) · Scientific Reports · doi:10.1038/s41598-021-84759-9 · Cited by 69 · see citing works
Self-citationDuan, Y., Chen, Z., Tan, L., Wang, X., Xue, Y., Wang, S., Wang, Q., Das, R., Lin, H., Hou, J., et al. (2019) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2019.135674 · Cited by 68 · see citing works
Koullouros, M., Khan, N., & Aly, E. H. (2016) · International Journal of Colorectal Disease · doi:10.1007/s00384-016-2662-y · Cited by 66 · see citing works
Transmission of antibiotic resistance at the wildlife-livestock interface
Lee, S., Fan, P., Liu, T., Yang, A.-N., Boughton, R., Pepin, K., Miller, R. S., & Jeong, K. (2022) · Communications Biology · doi:10.1038/s42003-022-03520-8 · Cited by 66 · see citing works
Song, Z., Zhang, J., He, L., Chen, M., Hou, X., Li, Z., & Zhou, L. (2014) · Digestive and Liver Disease · doi:10.1016/j.dld.2014.08.038 · Cited by 65 · see citing works
Cui, Y., Wang, S., Ding, S., Shen, J., & Zhu, K. (2020) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2019.121266 · Cited by 64 · see citing works
Revealing antibiotic resistance in therapeutic and dietary probiotic supplements
Selvin, J., Maity, D., Sajayan, A., & Kiran, G. S. (2020) · Journal of Global Antimicrobial Resistance · doi:10.1016/j.jgar.2020.02.007 · Cited by 63 · see citing works
Gut Microbiome Characteristics in feral and domesticated horses from different geographic locations
Li, A., Vinderola, G., Endo, A., Kantanen, J., Jingfeng, C., Binetti, A. G., Burns, P., Qingmiao, S., Suying, D., Yu, Z., et al. (2022) · Communications Biology · doi:10.1038/s42003-022-03116-2 · Cited by 59 · see citing works
Ljungquist, O., Kampmann, C., Resman, F., Riesbeck, K., & Tham, J. (2019) · Clinical Microbiology and Infection · doi:10.1016/j.cmi.2019.08.019 · Cited by 57 · see citing works
Sahuquillo-Arce, J. M., Selva, M., Perpiñán, H., Gobernado, M., Armero, C., López‐Quílez, A., González, F., & Vanaclocha, H. (2011) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00765-10 · Cited by 52 · see citing works
Halabi, M. K., Lahlou, F. A., Diawara, I., Adouzi, Y. E., Marnaoui, R., Benmessaoud, R., & Smyej, I. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.720701 · Cited by 52 · see citing works
Early Life Exposure to Antibiotics and Autism Spectrum Disorders: A Systematic Review
the SAWANTI Working Group, Łukasik, J., Patro-Gołąb, B., Horvath, A., Baron, R., & Szajewska, H. (2019) · Journal of Autism and Developmental Disorders · doi:10.1007/s10803-019-04093-y · Cited by 51 · see citing works
The role of vaccines in combating antimicrobial resistance (AMR) bacteria
Alghamdi, S. A. (2021) · Saudi Journal of Biological Sciences · doi:10.1016/j.sjbs.2021.08.054 · Cited by 51 · see citing works
Antibiotic resistance genes in food production systems support One Health opinions
Tiedje, J. M., Fu, Y., Mei, Z., Schäffer, A., Dou, Q., Amelung, W., Elsner, M., Adu-Gyamfi, J. J., Lee, H., Virta, M., et al. (2023) · Current Opinion in Environmental Science & Health · doi:10.1016/j.coesh.2023.100492 · Cited by 51 · see citing works
Self-citationAge-Related Decline in Carriage of Ampicillin-ResistantEscherichia coliin Young Calves
Hoyle, D. V., Shaw, D. J., Knight, H. I., Davison, H. C., Pearce, M. C., Low, J. C., Gunn, G. J., & Woolhouse, M. E. J. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.11.6927-6930.2004 · Cited by 50 · see citing works
Human microbiome restoration and safety
Daliri, E. B., Tango, C. N., Lee, B. H., & Oh, D. (2018) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2018.05.002 · Cited by 49 · see citing works
Antibiotic-induced gut microbiota depletion exacerbates host hypercholesterolemia
Kappel, B. A., Angelis, L. D., Puetz, A., Ballanti, M., Menghini, R., Marx, N., & Federici, M. (2022) · Pharmacological Research · doi:10.1016/j.phrs.2022.106570 · Cited by 49 · see citing works
An outbreak of multiple-drug-resistant Salmonella enteritis from raw milk.
Tacket, C. O., Lb, D., Fisher, H. J., & Cohen, M. L. (1985) · PubMed · Cited by 49 · see citing works
Li, J., Si, H., Du, H., Guo, H., Dai, H., Xu, S., & Wan, J. (2021) · BMC Microbiology · doi:10.1186/s12866-020-02068-z · Cited by 48 · see citing works
Kovtun, A. S., Averina, O. V., Алексеева, М. Г., & Даниленко, В. Н. (2020) · Microbial Drug Resistance · doi:10.1089/mdr.2019.0325 · Cited by 47 · see citing works
Impacts of dietary copper on the swine gut microbiome and antibiotic resistome
Brinck, J. E., Lassen, S. B., Forouzandeh, A., Pan, T., Wang, Y., Monteiro, A., Blavi, L., Solà‐Oriol, D., Stein, H. H., Su, J., et al. (2022) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2022.159609 · Cited by 47 · see citing works
Self-citationA Survey on Antimicrobial Resistance Genes of Frequently Used Probiotic Bacteria, 1901 to 2022
Tóth, A. G., Judge, M. F., Nagy, S. Á., Papp, M., & Solymosi, N. (2023) · Eurosurveillance · doi:10.2807/1560-7917.es.2023.28.14.2200272 · Cited by 46 · see citing works
Ricker, N., Trachsel, J., Colgan, P., Jones, J. A., Choi, J., Lee, J., Coetzee, J. F., Howe, A., Brockmeier, S. L., Loving, C. L., et al. (2020) · Frontiers in Veterinary Science · doi:10.3389/fvets.2020.00255 · Cited by 45 · see citing works
Kurowski, M. M., Seys, S., Bonini, M., Giacco, S. D., Delgado, L., Diamant, Z., Kowalski, M. L., Moreira, A. M., Rukhadze, M., & Couto, M. (2022) · Allergy · doi:10.1111/all.15328 · Cited by 44 · see citing works
A novel therapeutic concern: Antibiotic resistance genes in common chronic diseases
Pan, X., Zhou, Z., Liu, B., & Wu, Z. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1037389 · Cited by 40 · see citing works
High levels of drug resistance in commensal E. coli in a cohort of children from rural central India
Purohit, M. R., Lindahl, L. F., Diwan, V., Marrone, G., & Lundborg, C. S. (2019) · Scientific Reports · doi:10.1038/s41598-019-43227-1 · Cited by 37 · see citing works
Swarthout, J. M., Chan, E. M. G., Garcia, D., Nadimpalli, M. L., & Pickering, A. J. (2022) · Environmental Science & Technology · doi:10.1021/acs.est.2c01494 · Cited by 35 · see citing works
An Outbreak of Multiple-Drug-Resistant Salmonella Enteritis From Raw Milk
Tacket, C. O. (1985) · JAMA · doi:10.1001/jama.1985.03350380074024 · Cited by 35 · see citing works
Assessing antimicrobial resistance gene load in vegan, vegetarian and omnivore human gut microbiota
Losasso, C., Cesare, A. D., Mastrorilli, E., Patuzzi, I., Cibin, V., Eckert, E. M., Fontaneto, D., Vanzo, A., Ricci, A., & Corno, G. (2018) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2018.07.023 · Cited by 34 · see citing works
The Human Gut Resistome up to Extreme Longevity
Tavella, T., Turroni, S., Brigidi, P., Candela, M., & Rampelli, S. (2021) · mSphere · doi:10.1128/msphere.00691-21 · Cited by 31 · see citing works
Potential role of nutrients on immunity.
Ibrahim, K. S., & El-Sayed, E. M. (2016) · International Food Research Journal · Cited by 30 · see citing works
Rohrer, S. D., Jiménez-Uzcátegui, G., Parker, P. G., & Chubiz, L. M. (2023) · Scientific Reports · doi:10.1038/s41598-023-31826-y · Cited by 28 · see citing works
Ewbank, A. C., Fuentes-Castillo, D., Sacristán, C., Cardoso, B., Esposito, F., Fuga, B., de Macedo, E. C., Lincopán, N., & Catão-Dias, J. (2022) · Science of the Total Environment · doi:10.1016/j.scitotenv.2021.150539 · Cited by 27 · see citing works
Russo, V., Monetti, V. M., Guerriero, F., Trama, U., Guida, A., Menditto, E., & Orlando, V. (2018) · ClinicoEconomics and Outcomes Research · doi:10.2147/ceor.s161299 · Cited by 26 · see citing works
Antibiotics and probiotics impact gut antimicrobial resistance gene reservoir in COVID-19 patients
Su, Q., Liu, Q., Zhang, L., Xu, Z., Liu, C., Lu, W., Ching, J. Y. L., Li, A., Mak, J. W. Y., Lui, G. C.-Y., et al. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2128603 · Cited by 24 · see citing works
Han, R., Lü, H., Jiang, M.-W., Tan, K.-W., Peng, Z., Hu, J., Fang, D.-C., Lan, C., & Wu, X. (2016) · Gastroenterology Research and Practice · doi:10.1155/2016/8547686 · Cited by 21 · see citing works
Vaccination coverage in Italian children and antimicrobial resistance: an ecological analysis
Maugeri, A., Barchitta, M., & Agodi, A. (2022) · Antimicrobial Resistance and Infection Control · doi:10.1186/s13756-022-01173-0 · Cited by 19 · see citing works
Nazir, T., Abraham, S., & Islam, A. (2012) · International Journal of Health Sciences · doi:10.12816/0005977 · Cited by 18 · see citing works
Trasplante de microbiota fecal
de Paredes, A. G. G., de Santiago, E. R., Aguilera, L., Ferre‐Aracil, C., & López–Sanromán, A. (2014) · Gastroenterología y Hepatología · doi:10.1016/j.gastrohep.2014.07.010 · Cited by 17 · see citing works
Laconi, A., Tolosi, R., Mughini‐Gras, L., Cuccato, M., Cannizzo, F. T., & Piccirillo, A. (2022) · Scientific Reports · doi:10.1038/s41598-022-24927-7 · Cited by 16 · see citing works
Yun, J. H., Park, G. E., & Ki, H. K. (2021) · Antimicrobial Resistance and Infection Control · doi:10.1186/s13756-021-00986-9 · Cited by 15 · see citing works
Feng, T., Hilal, M. G., Wang, Y., Zhou, R., Yu, Q., Qu, J., & Li, H. (2021) · Microorganisms · doi:10.3390/microorganisms9061152 · Cited by 11 · see citing works
Self-citationMiranda, M. V., González, F. C., Paredes-Godoy, O. S., Maulén, M., Vásquez, C. C., & Díaz-Vásquez, W. A. (2022) · Biological Research · doi:10.1186/s40659-022-00389-z · Cited by 8 · see citing works
Weil, A. A., Debela, M. D., Muyanja, D. M., Kakuhikire, B., Baguma, C., Bangsberg, D. R., Tsai, A. C., & Lai, P. S. (2020) · PLoS ONE · doi:10.1371/journal.pone.0229699 · Cited by 8 · see citing works
The interaction of gut microbiota, genetic variation, and diet in autism spectrum disorder
Liu, X. (2022) · mLife · doi:10.1002/mlf2.12024 · Cited by 7 · see citing works
Assessing and controlling mineral status in livestock.
Suttle, N. F. (2010) · CABI eBooks · doi:10.1079/9781845934729.0039 · Cited by 7 · see citing works
Hu, Y., Jiang, L., Zhang, T., Lei, D., Jiang, W.-W., Zhang, D., Lin, K., & Cui, C. (2018) · PubMed · doi:10.13227/j.hjkx.201712106 · Cited by 7 · see citing works
Self-citationForouzandeh, A., Lassen, S. B., Brinck, J. E., Zhou, Y., Zhu, J., Solà‐Oriol, D., Monteiro, A., Hao, X., Su, J., Stein, H. H., et al. (2023) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2023.164183 · Cited by 7 · see citing works
Self-citationEffective Methods for Disinfection and Sterilization
Fernández, L., Gutiérrez, D., Martı́nez, B., Rodrı́guez, A., & García, P. (2019) · doi:10.1002/9781119282549.ch22 · Cited by 6 · see citing works
Treatment of impetigo: oral antibiotics most commonly prescribed.
Bolaji, R. S., Dabade, T. S., Gustafson, C. J., Davis, S., Krowchuk, D. P., & Feldman, S. R. (2012) · PubMed · Cited by 5 · see citing works
Poultry Ownership and Genetic Antibiotic Resistance Determinants in the Gut of Preschool Children
Brogdon, J. M., Sié, A., Dah, C., Ouèrmi, L., Coulibaly, B., Lebas, E., Zhong, L., Chen, C., Lietman, T. M., Keenan, J. D., et al. (2021) · American Journal of Tropical Medicine and Hygiene · doi:10.4269/ajtmh.20-1384 · Cited by 5 · see citing works
Coulborn, R. M., Clayton, E., & Aiello, A. E. (2010) · doi:10.1021/bk-2010-1048.ch018 · Cited by 4 · see citing works
Better together: Sleep, circadian genes, and immunity
Prather, A. A. (2020) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2020.04.011 · Cited by 2 · see citing works
Fecal Microbiota Transplantation
(2016) · WORLD SCIENTIFIC eBooks · doi:10.1142/9789814730150_0005 · Cited by 2 · see citing works
Quantifying the benefits of vaccines in combating antimicrobial resistance
Jit, M., Anderson, M., & Cooper, B. S. (2020) · Research Explorer (The University of Manchester) · Cited by 2 · see citing works
Fecal Microbiota Transplantation.
Lichtenstein, G. R. (2015) · PubMed Central · Cited by 1 · see citing works
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Emerging contaminants: A One Health perspective
Wang, F., Xiang, L., Sze-Yin Leung, K., Elsner, M., Zhang, Y., Guo, Y., Pan, B., Sun, H., An, T., Ying, G., et al. (2024) · The Innovation · doi:10.1016/j.xinn.2024.100612 · Cited by 639 · see citing works
Self-citationBiosensor Technologies for Water Quality: Detection of Emerging Contaminants and Pathogens
Fdez-Sanromán, A., Bernárdez-Rodas, N., Rosales, E., Pazos, M. M., González‐Romero, E., & Sanromán, M. Á. (2025) · Biosensors · doi:10.3390/bios15030189 · Cited by 97 · see citing works
Sun, Z., Hong, W., Xue, C., & Dong, N. (2024) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2024.175971 · Cited by 31 · see citing works
Aliberti, S. M., & Capunzo, M. (2025) · Nutrients · doi:10.3390/nu17040722 · Cited by 29 · see citing works
Kuźniar, A., Kruczyńska, A., Włodarczyk, K., Vangronsveld, J., & Wolińska, A. (2025) · Applied Sciences · doi:10.3390/app15031253 · Cited by 25 · see citing works
Ponzo, E., Gaetano, S. D., Midiri, A., Mancuso, G., Giovanna, P., Giuliana, D., Zummo, S., & Biondo, C. (2024) · Hygiene · doi:10.3390/hygiene4030024 · Cited by 24 · see citing works
Liu, X., Fan, Q., Li, F., Wu, C., Yi, S., Lu, H., Wu, Y., Liu, Y., & Tian, J. (2024) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2024.136731 · Cited by 23 · see citing works
Metagenomic insights into resistome, mobilome and virulome in different fecal waste
Su, Z. G., Cui, S., Wen, D., & Chen, L. (2024) · Environmental Research · doi:10.1016/j.envres.2024.119861 · Cited by 21 · see citing works
Li, X., Bickel, S., Wicaksono, W. A., Lin, X., Berg, G., & Zhu, Y. (2025) · One Health Advances · doi:10.1186/s44280-025-00081-3 · Cited by 18 · see citing works
Self-citationKiplimo, D., Mwirichia, R., Wicaksono, W. A., Berg, G., & Abdelfattah, A. (2025) · Journal of Sustainable Agriculture and Environment · doi:10.1002/sae2.70049 · Cited by 18 · see citing works
Yang, M., Peng, L., Mu, M., Yang, F., Li, Z., Han, B., & Zhang, K. (2025) · Environmental Pollution · doi:10.1016/j.envpol.2025.126277 · Cited by 13 · see citing works
Liu, T., Shao, Y., Pang, X., Liu, Y., Mo, X., Chen, Z., & Lu, X. (2024) · Environmental Research · doi:10.1016/j.envres.2024.120040 · Cited by 10 · see citing works
Wang, X., Li, H., Yang, Y., Wu, Z., Wang, Z., Li, D., Xia, W., Zou, S., Liu, Y., & Wang, F. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1452101 · Cited by 9 · see citing works
Self-citationEffects of antibiotic and disinfectant exposure on the mouse gut microbiome and immune function
Xu, W.-B., Wang, Y.-F., Meng, S.-Y., Zhang, X., Wang, Y., & Liu, Z. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.00611-24 · Cited by 12 · see citing works
Self-citationThe Interactive Dynamics of Pseudomonas aeruginosa in Global Ecology
de Sousa, T., Silva, C., Igrejas, G., Hébraud, M., & Poeta, P. A. C. Q. D. (2025) · Journal of Basic Microbiology · doi:10.1002/jobm.70004 · Cited by 9 · see citing works
Shukla, A., Sharma, C., Malik, M. Z., Singh, A. K., Aditya, A. K., Mago, P., Shalimar, S., & Ray, A. K. (2025) · Journal of Environmental Management · doi:10.1016/j.jenvman.2025.124693 · Cited by 11 · see citing works
Skoufos, S., Stavropoulou, E., Tsigalou, C., & Voidarou, C. C. (2025) · Microorganisms · doi:10.3390/microorganisms13071564 · Cited by 8 · see citing works
Cai, T.-G., Zhang, J., Lu, L., Wang, Y., & Zhu, D. (2024) · Environmental Research · doi:10.1016/j.envres.2024.120220 · Cited by 7 · see citing works
Self-citationUnderstanding the Effect of B Vitamins on Gut Microbiota: A Comprehensive Review
Karademir, E., Gedik, B. A., Bostan, Z. Z., & Karadağ, M. G. (2025) · Nutrition Reviews · doi:10.1093/nutrit/nuaf236 · Cited by 7 · see citing works
Towards One Health action for addressing antimicrobial resistance in the age of polycrisis
Keenum, I. M., Berendonk, T. U., Bonnedahl, J., Cytryn, E. J., Dagot, C., Karkman, A., Fatta‐Kassinos, D., Hayes, A., Kirschner, A. K. T., Kreft, J., et al. (2026) · Nature Sustainability · doi:10.1038/s41893-025-01753-z · Cited by 7 · see citing works
Self-citationVivarelli, S., Francesco, C. D., Paba, E., Giambò, F., & Fenga, C. (2026) · Frontiers in Public Health · doi:10.3389/fpubh.2026.1746385 · Cited by 7 · see citing works
Liu, M., Sui, C., Zhao, W., Fan, C., Zhang, Y., Qiu, Z., Wang, Y., Zhang, Q., & Liu, Y. (2025) · Microbiome · doi:10.1186/s40168-025-02160-4 · Cited by 6 · see citing works
Self-citationDuan, Y., She, H., Jing, L., Duan, L., Zheng, J., Shao, Y., Che, Y., Shi, Y., Guo, C., Zhao, W., et al. (2025) · Environmental Pollution · doi:10.1016/j.envpol.2025.126296 · Cited by 5 · see citing works
Cotto, I., Albán, V., Durán‐Viseras, A., Jesser, K. J., Zhou, N. A., Hemlock, C., Ballard, A. M., Fagnant-Sperati, C. S., Lee, G. O., Hatt, J. K., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-66567-1 · Cited by 5 · see citing works
Wang, Y., Cui, Q., Hou, Y., He, S., Zhao, W., Lancuo, Z., Sharshov, K., & Wang, W. (2025) · Veterinary Sciences · doi:10.3390/vetsci12040297 · Cited by 5 · see citing works
Self-citationYao, F., Qi, Y., Chen, Y., Qin, Z., Shi, Z., Liu, Z., & Zhuang, W. (2025) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2025.139211 · Cited by 5 · see citing works
Manure sterilization reduced antibiotic resistance genes in lettuce endophytes
Dou, Q., Liang, Y., Fu, Y., Mei, Z., Xiang, L., Ahmad, R., Zhao, W., Jiang, X., Hashsham, S. A., Tiedje, J. M., et al. (2024) · Journal of Cleaner Production · doi:10.1016/j.jclepro.2024.143789 · Cited by 4 · see citing works
Self-citationDiet-driven diversity of antibiotic resistance genes in wild bats: implications for public health
Huang, L., Dai, W., Sun, X., Pu, Y., Feng, J., Jin, L., & Sun, K. (2025) · Microbiological Research · doi:10.1016/j.micres.2025.128086 · Cited by 4 · see citing works
Li, R., Pei, X., Tao, C., Deng, X., Wang, Y., Wang, Y., Wang, J., Shen, Z., Shen, Q., & Li, R. (2025) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2025.119086 · Cited by 3 · see citing works
Self-citationTansirichaiya, S., Songsomboon, K., Wigand, J., Winje, E., Chaianant, N., Leartsiwawinyu, W., & Al‐Haroni, M. (2025) · Journal of Oral Microbiology · doi:10.1080/20002297.2025.2589656 · Cited by 3 · see citing works
Pattapulavar, V., Sanjai Kumar, S., Ramanujam, S., Subburaj, S., & John, G. C. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1736436 · Cited by 3 · see citing works
Wen, C., Guan, J., Uea-Anuwong, T., Shang, J., Peng, C., Tang, X., Magouras, I., Sun, Y., & Li, F. (2025) · Environmental Research · doi:10.1016/j.envres.2025.122108 · Cited by 2 · see citing works
Double-Edged Sword: Urbanization and Response of Amniote Gut Microbiome in the Anthropocene
Peng, Y., Huang, M., Sun, X., Ling, W., Hao, X., Huang, G., Wu, X., Chen, Z., & Tang, X. (2025) · Microorganisms · doi:10.3390/microorganisms13081736 · Cited by 4 · see citing works
Liu, W., Gong, F., Huang, Y., Shao, Y., Wang, Z., & Xiao, X. (2025) · Phytomedicine · doi:10.1016/j.phymed.2025.157287 · Cited by 2 · see citing works
Chen, T., Li, S., Xiao, J., Peng, R., Sha, M., Wang, J., Ma, J., Wang, W., Ma, M., Li, S., et al. (2025) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2025.140283 · Cited by 2 · see citing works
Wang, J., Jiang, W., Pu, E., Zhao, W., Ma, L., Pei, G., Hu, X., Liu, Y., Tan, J., Bureenok, S., et al. (2025) · Industrial Crops and Products · doi:10.1016/j.indcrop.2025.122292 · Cited by 2 · see citing works
Global distribution of α/β hydrolase family macrolide esterases in Gram-positive bacteria
Zhou, Y., Yang, Y., Mao, Y., Hou, Z., Xu, Y., Zhao, K., Chu, Y., Wang, X., Wang, C., Shun, L., et al. (2025) · The ISME Journal · doi:10.1093/ismejo/wraf261 · Cited by 2 · see citing works
Liu, M., Zhang, Q., Sui, C., Zhao, W., Fan, C., Zhang, Y., Sun, Z., Zhao, Y., & Liu, Y. (2025) · Environmental Science & Technology · doi:10.1021/acs.est.5c14251 · Cited by 2 · see citing works
Unveiling the hidden world of microorganisms and their impact on the Earth's ecosystems
Yang, Y., & Zhou, J. Z. (2023) · mLife · doi:10.1002/mlf2.12100 · Cited by 2 · see citing works
Containing Emerging and Re-Emerging Infections: A Continuing Global Health Challenge
Kaba, M., Abunna, F., Mereta, S. T., Kitaw, Y., & Abdissa, A. (2025) · IntechOpen eBooks · doi:10.5772/intechopen.1009675 · Cited by 1 · see citing works
Zhang, W., Zhang, M., Xie, J., Huang, H., Schmitz‐Esser, S., Li, W., Liu, H., & Li, D. (2025) · Scientific Reports · doi:10.1038/s41598-025-25645-6 · Cited by 1 · see citing works
Williams, A. D., Hooton, S. P. T., King, E., Avery, L. M., Hough, R. L., Hobman, J. L., Stekel, D. J., Neal, A. L., & West, H. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1666851 · Cited by 1 · see citing works
Gong, Y., Liu, Y., Cheng, Y., Liu, B. C., Qiao, M., Sun, R., Guo, B., Liu, J., & Wang, F. (2026) · Applied Soil Ecology · doi:10.1016/j.apsoil.2026.106872 · Cited by 1 · see citing works
Self-citationYi, L., An, L., Wang, R., Niu, X., Chen, J., Zhang, B., Pei, X., Xu, X., & Chen, J. (2026) · BMC Veterinary Research · doi:10.1186/s12917-026-05482-z · Cited by 1 · see citing works
Metagenomic profiling of resistome and mobilome dynamics in diverse freshwater aquaculture modes
Deng, X., Wang, Y., Zhu, H., Guo, Y., Wang, Q., Han, J., Yu, K., & Zhou, B. (2026) · Water Research · doi:10.1016/j.watres.2026.126133 · Cited by 1 · see citing works
Self-citationXu, J., Jensen, M. K. S., Lassen, S. B., Brandt, K. K., Dechesne, A., & Smets, B. F. (2024) · Journal of Applied Microbiology · doi:10.1093/jambio/lxae302 · Cited by 1 · see citing works
Self-citationEmmerick, L. S., Schwarz, M. G. A., Corrêa, P. R., Pinero, S. L., Gomes, L. H. F., Almeida, A. M. L., Valente, R. H., Degrave, W. M. S., & Mendonça-Lima, L. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1558006
Environmental Exposures and the Human Gut Resistome in Northwest EcuadorPreprint
Cotto, I., Durán‐Viseras, A., Jesser, K. J., Zhou, N. A., Hemlock, C., Albán, V., Ballard, A. M., Fagnant-Sperati, C. S., Lee, G. O., Hatt, J. K., et al. (2025) · medRxiv · doi:10.1101/2025.05.23.25327954
Yadegari, E., Abedi, S., & Khademi, A. (2024) · Colloid & Nanoscience Journal · doi:10.61186/cnj.2.2.296
Soil as a source and sink for antimicrobial resistance
Solaiman, Z., Bolan, S., Sharma, S., Mukherjee, S., Mathew, S., Thakur, R., Bhargava, P. C., Hou, R., Singh, E., Chaurasia, D., et al. (2025) · Advances in agronomy · doi:10.1016/bs.agron.2025.10.004
Self-citationIsolation of Novel Lactobacillaceae Free of Antibiotic Resistance Genes
Sokolyanskaya, L. O., Avakyan, M. R., Khandyshanova, M. M., Klokov, N. V., Rakitin, A. V., Begmatov, S., Rakitin, A. V., Ganina, V., Glukhova, L. B., Churin, A. A., et al. (2025) · Microbiology · doi:10.1134/s0026261725605226
Frade-Pérez, M. D., Pérez‐Serrano, R. M., Cornelio-Martínez, S., González‐Dávalos, L., Venegas, Y. R., Flores-Gasca, E., Varela‐Echavarría, A., & Izaguirre, M. O. M. (2026) · Pets · doi:10.3390/pets3010015
Farming reshapes the gut resistome, virulome, and mobilome of Cervidae
Sun, Y.-Z., Su, J.-W., Elsheikha, H. M., Lou, W.-B., Song, Y.-H., Li, J.-M., Liu, F., Cai, R.-P., Leng, X., Gong, Q.-L., et al. (2026) · Virulence · doi:10.1080/21505594.2026.2728506 · Cited by 2 · see citing works
Xu, L., Cheng, C., Xie, S., Pu, E., Zeng, Y., Pu, R., Xie, H., Liu, Y., He, Y. I., Chen, X., et al. (2026) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2026.142265
El‐Sehrawy, A. A. M. A., Jasim, S. A., Jasim, H. F., Nematov, O. N., Baig, M. R., Smerat, A., Iqbal, M. S., Basunduwah, T. S., & Beig, M. (2026) · BMC Microbiology · doi:10.1186/s12866-026-05542-2
Kar, D., Singh, R. K., Sinha, D., Panda, D., Beniwal, P., Kumar, I., Ganguly, I., & Singh, S. (2026) · Journal of Pure and Applied Microbiology · doi:10.22207/jpam.20.3.43
Nori and kelp intake attenuates antibiotic-induced gut dysbiosis and resistome expansion
Hu, S., Xi, J., Liang, T., Xu, J., Xue, Y.-X., Yu, X., Peng, J., Li, H.-B., & Xue, X.-M. (2026) · Journal of Environmental Sciences · doi:10.1016/j.jes.2026.105749
Self-citationDas, R., Victor, C., Hatt, J. K., Durán‐Viseras, A., Konstantinidis, K. T., Sinharoy, S. S., Waller, L. A., Nalá, R., Levy, K., Freeman, M. C., et al. (2026) · American Journal of Clinical Nutrition · doi:10.1016/j.ajcnut.2026.101464
Zhao, Q., Ding, Y., Yan, S., Ma, H., Wang, Y., Guo, S., Luo, X., Pang, Y., Jiang, C., & Wang, K. (2026) · Gut · doi:10.1136/gutjnl-2026-339637
Self-citationLi, Y., Zheng, N., Zhao, Y., Li, Y., Zhang, X., & Lu, Y. (2026) · Environmental Chemistry and Ecotoxicology · doi:10.1016/j.enceco.2026.10.004
Gál, K., Mikolás, M., Barabás, M., Fauszt, P., David, P., Szilágyi-Tolnai, E., Balogh, K., Solymosi, D., Miklós, S., Mikáczó, J., et al. (2026) · Scientific Reports · doi:10.1038/s41598-026-69383-9
- Authors
- Fu, Y., Dou, Q., Smalla, K., Wang, Y., Johnson, T. A., Brandt, K. K., Mei, Z., Liao, M., Hashsham, S. A., Schäffer, A., Smidt, H., Zhang, T., Li, H., Stedtfeld, R., Sheng, H., Chai, B., Virta, M., Jiang, X., Wang, F., Zhu, Y., & Tiedje, J. M.
- Affiliations
- Chinese Academy of Sciences (CN)
- Julius Kühn-Institut (DE)
- Purdue University West Lafayette (US)
- University of Copenhagen (DK)
- University of Helsinki (FI)
- Michigan State University (US)
- RWTH Aachen University (DE)
- Wageningen University & Research (NL)
- University of Hong Kong (HK)
- Jiangsu Academy of Agricultural Sciences (CN)
- Corresponding author
- Wang, Fang
- ORCID
- Venue
- mLife
- Publisher
- Wiley
- Published
- 2023-12
- Volume
- 2
- Issue
- 4
- Pages
- 350-364
- ISSN
- 2097-1699 (ISSN-L)
- 2770-100X
- PMC
- PMC10989101
- OpenAlex
- W4390227308
- Cited by
- 65
- References
- 151
- Citations by year
- 2026: 22 · 2025: 30 · 2024: 12 · 2023: 1
- FWCI
- 1.18
- Type
- journal article
- Language
- en
- Open access
- diamond
- doi.org
- Licence
- Locations
- mLife (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- RWTH Publications (RWTH Aachen) (publishedVersion, other-oa)
- Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, cc-by)
- Socio-Environmental Systems Modeling (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Työväentutkimus Vuosikirja (submittedVersion)
- Funders
- Academy of Finland
- China Postdoctoral Science Foundation (2023M733593)
- National Natural Science Foundation of China (41977137, 42307048)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
- Life Sciences › Immunology and Microbiology › Applied Microbiology and Biotechnology › Antibiotic Use and Resistance
- Physical Sciences › Environmental Science › Pollution › Pharmaceutical and Antibiotic Environmental Impacts
- Keywords
- gut microbiota, antimicrobial resistance, antibiotic resistance genes, One Health, horizontal gene transfer, vertical gene transfer, probiotics, environmental reservoirs of resistance, selection pressure, diet and microbiome, infectious disease prevention
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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