Optimizing the design and analysis of clinical functional magnetic resonance imaging research studies

An Integrative Theory of Prefrontal Cortex Function

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Functional connectivity in the resting brain: a network analysis of the default mode hypothesis

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Nonparametric permutation tests for functional neuroimaging: A primer with examples

Nichols, T. E., & Holmes, A. P. (2002) · Human Brain Mapping · doi:10.1002/hbm.1058 · Cited by 6,256 · see citing works

Distributed and overlapping representations of faces and objects in ventral temporal cortex

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Dissociating the Role of the Dorsolateral Prefrontal and Anterior Cingulate Cortex in Cognitive Control

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Investigations into resting-state connectivity using independent component analysis

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Contributions of the Amygdala to Emotion Processing: From Animal Models to Human Behavior

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Beyond mind-reading: multi-voxel pattern analysis of fMRI data

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Masked Presentations of Emotional Facial Expressions Modulate Amygdala Activity without Explicit Knowledge

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Building Memories: Remembering and Forgetting of Verbal Experiences as Predicted by Brain Activity

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Controlling the familywise error rate in functional neuroimaging: a comparative review

Nichols, T. E., & Hayasaka, S. (2003) · Statistical Methods in Medical Research · doi:10.1191/0962280203sm341ra · Cited by 1,210 · see citing works

Increased amygdala response to masked emotional faces in depressed subjects resolves with antidepressant treatment: an fMRI study

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Imaging recollection and familiarity in the medial temporal lobe: a three-component model

Diana, R. A., Yonelinas, A. P., & Ranganath, C. (2007) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2007.08.001 · Cited by 1,154 · see citing works

Aberrant “Default Mode” Functional Connectivity in Schizophrenia

Garrity, A. G., Pearlson, G. D., McKiernan, K., Lloyd, D., Kiehl, K. A., & Calhoun, V. D. (2007) · American Journal of Psychiatry · doi:10.1176/ajp.2007.164.3.450 · Cited by 1,114 · see citing works

Partial least squares analysis of neuroimaging data: applications and advances

McIntosh, A. R., & Lobaugh, N. J. (2004) · NeuroImage · doi:10.1016/j.neuroimage.2004.07.020 · Cited by 1,084 · see citing works

Can’t shake that feeling: event-related fMRI assessment of sustained amygdala activity in response to emotional information in depressed individuals

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Synaptic plasticity and dysconnection in schizophrenia

Stephan, K. E., Baldeweg, T., & Friston, K. J. (2006) · Biological Psychiatry · doi:10.1016/j.biopsych.2005.10.005 · Cited by 841 · see citing works

Physiological Dysfunction of the Dorsolateral Prefrontal Cortex in Schizophrenia Revisited

Callicott, J. H. (2000) · Cerebral Cortex · doi:10.1093/cercor/10.11.1078 · Cited by 810 · see citing works

From cognitive to neural models of working memory

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Empirical Analyses of BOLD fMRI Statistics

Zarahn, E., Aguirre, G. K., & D’Esposito, M. (1997) · NeuroImage · doi:10.1006/nimg.1997.0263 · Cited by 695 · see citing works

Statistical methods of estimation and inference for functional MR image analysis

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Beyond hypofrontality: A quantitative meta‐analysis of functional neuroimaging studies of working memory in schizophrenia

Glahn, D. C., Ragland, J., Abramoff, A., Barrett, J., Laird, A. R., Bearden, C., & Velligan, D. (2005) · Human Brain Mapping · doi:10.1002/hbm.20138 · Cited by 660 · see citing works

Analysis of a large fMRI cohort: statistical and methodological issues for group analyses

Thirion, B., Pinel, P., Mériaux, S., Roche, A., Dehaene, S., & Poline, J.-B. (2007) · NeuroImage · doi:10.1016/j.neuroimage.2006.11.054 · Cited by 563 · see citing works

Guidelines for reporting an fMRI study

Poldrack, R. A., Fletcher, P. C., Henson, R. N., Worsley, K. J., Brett, M., & Nichols, T. E. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2007.11.048 · Cited by 550 · see citing works

Schizophrenic subjects show aberrant fMRI activation of dorsolateral prefrontal cortex and basal ganglia during working memory performance

Manoach, D. S., Gollub, R. L., Benson, E., Searl, M. M., GOFF, D. C., Halpern, E. F., Saper, C. B., & Rauch, S. L. (2000) · Biological Psychiatry · doi:10.1016/s0006-3223(00)00227-4 · Cited by 502 · see citing works

Age-related Changes in Brain Activity across the Adult Lifespan

Grady, C. L., Springer, M. V., Hongwanishkul, D., McIntosh, A. R., & Winocur, G. (2006) · Journal of Cognitive Neuroscience · doi:10.1162/jocn.2006.18.2.227 · Cited by 497 · see citing works

Validating cluster size inference: random field and permutation methods

Hayasaka, S. (2003) · NeuroImage · doi:10.1016/j.neuroimage.2003.08.003 · Cited by 491 · see citing works

Empirical Analyses of BOLD fMRI Statistics

Aguirre, G. K., Zarahn, E., & D’Esposito, M. (1997) · NeuroImage · doi:10.1006/nimg.1997.0264 · Cited by 474 · see citing works

Amygdala response to facial expressions in children and adults.

Thomas, K. M., Drevets, W. C., Whalen, P. J., Eccard, C. H., Dahl, R. E., Ryan, N. D., & Casey, B. J. (2001) · Biological Psychiatry · doi:10.1016/s0006-3223(00)01066-0 · Cited by 470 · see citing works

Comparing hemodynamic models with DCM

Stephan, K. E., Weiskopf, N., Drysdale, P. M., Robinson, P. A., & Friston, K. J. (2007) · NeuroImage · doi:10.1016/j.neuroimage.2007.07.040 · Cited by 441 · see citing works

Abnormal attention modulation of fear circuit function in pediatric generalized anxiety disorder

McClure, E. B., Monk, C. S., Nelson, E. E., Parrish, J. M., Adler, A., Blair, R. J. R., Fromm, S., Charney, D. S., Leibenluft, E., Ernst, M., et al. (2007) · Archives of General Psychiatry · doi:10.1001/archpsyc.64.1.97 · Cited by 431 · see citing works

Event-related functional magnetic resonance imaging: modelling, inference and optimization

Josephs, O., & Henson, R. N. A. (1999) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.1999.0475 · Cited by 425 · see citing works

Localization of Cardiac-Induced Signal Change in fMRI

Dagli, M. S., Ingeholm, J. E., & Haxby, J. V. (1999) · NeuroImage · doi:10.1006/nimg.1998.0424 · Cited by 385 · see citing works

Disorder-Specific Neuroanatomical Correlates of Attentional Bias in Obsessive-compulsive Disorder, Panic Disorder, and Hypochondriasis

van den Heuvel, O. A., Veltman, D. J., Groenewegen, H. J., Witter, M. P., Merkelbach, J. W., Cath, D. C., van Balkom, A. J. L. M., van Oppen, P., & van Dyck, R. (2005) · Archives of General Psychiatry · doi:10.1001/archpsyc.62.8.922 · Cited by 375 · see citing works

A developmental examination of amygdala response to facial expressions

Guyer, A. E., Monk, C. S., McClure-Tone, E. B., Nelson, E. E., Roberson-Nay, R., Adler, A. D., Fromm, S. J., Leibenluft, E., Pine, D. S., & Ernst, M. (2008) · Journal of Cognitive Neuroscience · doi:10.1162/jocn.2008.20114 · Cited by 357 · see citing works

Temporal lobe and “default” hemodynamic brain modes discriminate between schizophrenia and bipolar disorder

Calhoun, V. D., Maciejewski, P. K., Pearlson, G. D., & Kiehl, K. A. (2007) · Human Brain Mapping · doi:10.1002/hbm.20463 · Cited by 344 · see citing works

Amygdala and Nucleus Accumbens Activation to Emotional Facial Expressions in Children and Adolescents at Risk for Major Depression

Monk, C. S., Klein, R. G., Telzer, E. H., Schroth, E. A., Mannuzza, S., Moulton, J. L., Guardino, M., Masten, C. L., McClure-Tone, E. B., Fromm, S., et al. (2008) · American Journal of Psychiatry · doi:10.1176/appi.ajp.2007.06111917 · Cited by 335 · see citing works

Partially Distributed Representations of Objects and Faces in Ventral Temporal Cortex

O’Toole, A. J., Jiang, F., Abdi, H., & Haxby, J. V. (2005) · Journal of Cognitive Neuroscience · doi:10.1162/0898929053467550 · Cited by 321 · see citing works

Pathophysiologically based treatment interventions in schizophrenia

Lewis, D. A., & González‐Burgos, G. (2006) · Nature Medicine · doi:10.1038/nm1478 · Cited by 320 · see citing works

Association of Dorsolateral Prefrontal Cortex Dysfunction With Disrupted Coordinated Brain Activity in Schizophrenia: Relationship With Impaired Cognition, Behavioral Disorganization, and Global Function

Yoon, J. H., Minzenberg, M., Ursu, S., Walters, R., Wendelken, C., Ragland, J. D., & Carter, C. S. (2008) · American Journal of Psychiatry · doi:10.1176/appi.ajp.2008.07060945 · Cited by 315 · see citing works

Investigation of Low Frequency Drift in fMRI Signal

Smith, A. M., Lewis, B. K., Ruttimann, U. E., Ye, F. Q., Sinnwell, T., Yang, Y., Duyn, J. H., & Frank, J. A. (1999) · NeuroImage · doi:10.1006/nimg.1999.0435 · Cited by 313 · see citing works

Effect of task conditions on brain responses to threatening faces in social phobics: An event-related functional magnetic resonance imaging study

Straube, T., Kolassa, I., Glauer, M., Mentzel, H.-J., & Miltner, W. H. R. (2004) · Biological Psychiatry · doi:10.1016/j.biopsych.2004.09.024 · Cited by 273 · see citing works

ROC Analysis of Statistical Methods Used in Functional MRI: Individual Subjects

Skudlarski, P., Constable, R. T., & Gore, J. C. (1999) · NeuroImage · doi:10.1006/nimg.1999.0402 · Cited by 260 · see citing works

Lateral and Medial Hypofrontality in First-Episode Schizophrenia: Functional Activity in a Medication-Naive State and Effects of Short-Term Atypical Antipsychotic Treatment

Snitz, B. E., MacDonald, A. W., Cohen, J. D., Cho, R. Y., Becker, T. M., & Carter, C. S. (2005) · American Journal of Psychiatry · doi:10.1176/appi.ajp.162.12.2322 · Cited by 248 · see citing works

Theoretical, Statistical, and Practical Perspectives on Pattern-based Classification Approaches to the Analysis of Functional Neuroimaging Data

O’Toole, A. J., Jiang, F., Abdi, H., Pénard, N., Dunlop, J. P., & Parent, M. A. (2007) · Journal of Cognitive Neuroscience · doi:10.1162/jocn.2007.19.11.1735 · Cited by 238 · see citing works

Fisher discriminative analysis of resting-state brain function for attention-deficit/hyperactivity disorder

Zhu, C.-Z., Zang, Y.-F., Cao, Q.-J., Yan, C.-G., He, Y., Jiang, T.-Z., Sui, M.-Q., & Wang, Y.-F. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2007.11.029 · Cited by 236 · see citing works

Cortisol and Catecholamines in Posttraumatic Stress Disorder

Young, E. A., & Breslau, N. (2004) · Archives of General Psychiatry · doi:10.1001/archpsyc.61.4.394 · Cited by 223 · see citing works

Cortical Development and Thalamic Pathology in Schizophrenia

Jones, E. G. (1997) · Schizophrenia Bulletin · doi:10.1093/schbul/23.3.483 · Cited by 223 · see citing works

Attention to Action: Specific Modulation of Corticocortical Interactions in Humans

Rowe, J. B., Friston, K. J., Frackowiak, R. S. J., & Passingham, R. E. (2002) · NeuroImage · doi:10.1006/nimg.2002.1156 · Cited by 219 · see citing works

Scaled Subprofile Model: A Statistical Approach to the Analysis of Functional Patterns in Positron Emission Tomographic Data

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Misattribution of speech and impaired connectivity in patients with auditory verbal hallucinations

Mechelli, A., Allen, P., Amaro, E., Fu, C. H. Y., Williams, S. C. R., Brammer, M. J., Johns, L. C., & McGuire, P. K. (2007) · Human Brain Mapping · doi:10.1002/hbm.20341 · Cited by 175 · see citing works

Brain Activations in Schizophrenia During a Graded Memory Task Studied With Functional Neuroimaging

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Evaluating fMRI preprocessing pipelines

Strother, S. C. (2006) · IEEE Engineering in Medicine and Biology Magazine · doi:10.1109/memb.2006.1607667 · Cited by 169 · see citing works

An empirical investigation into the number of subjects required for an event-related fMRI study

Murphy, K., & Garavan, H. (2004) · NeuroImage · doi:10.1016/j.neuroimage.2004.02.005 · Cited by 154 · see citing works

Diagnosis and exploration of massively univariate neuroimaging models

Luo, W., & Nichols, T. E. (2003) · NeuroImage · doi:10.1016/s1053-8119(03)00149-6 · Cited by 151 · see citing works

Increased hemodynamic response in the hippocampus, thalamus and prefrontal cortex during abnormal sensory gating in schizophrenia

Tregellas, J. R., Davalos, D. B., Rojas, D. C., Waldo, M. C., Gibson, L., Wylie, K., Du, Y. P., & Freedman, R. (2007) · Schizophrenia Research · doi:10.1016/j.schres.2006.12.033 · Cited by 143 · see citing works

Optimizing the fMRI data-processing pipeline using prediction and reproducibility performance metrics: I. A preliminary group analysis

Strother, S. C., Conte, S. L., Hansen, L. K., Anderson, J., Zhang, J., Pulapura, S. K., & Rottenberg, D. A. (2004) · NeuroImage · doi:10.1016/j.neuroimage.2004.07.022 · Cited by 134 · see citing works

Design and analysis of fMRI studies with neurologically impaired patients

Price, C. J., Crinion, J., & Friston, K. J. (2006) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.20580 · Cited by 132 · see citing works

Differential Carbon Dioxide Sensitivity in Childhood Anxiety Disorders and Nonill Comparison Group

Pine, D. S., KLEIN, R. G., Coplan, J. D., Papp, L. A., Hoven, C. W., Martínez, J. A. B., Kovalenko, P., Mandell, D. J., Moreau, D., Klein, D. F., et al. (2000) · Archives of General Psychiatry · doi:10.1001/archpsyc.57.10.960 · Cited by 130 · see citing works

Altered Effective Connectivity within the Language Network in Primary Progressive Aphasia

Sonty, S., Mesulam, M. M., Weıntraub, S., Johnson, N., Parrish, T. B., & Gitelman, D. R. (2007) · Journal of Neuroscience · doi:10.1523/jneurosci.4127-06.2007 · Cited by 130 · see citing works

Group analysis in functional neuroimaging: selecting subjects using similarity measures

Kherif, F. (2003) · NeuroImage · doi:10.1016/j.neuroimage.2003.08.018 · Cited by 100 · see citing works

REX: Response Exploration for Neuroimaging Datasets

Duff, E. P., Cunnington, R., & Egan, G. F. (2007) · Neuroinformatics · doi:10.1007/s12021-007-9001-y · Cited by 81 · see citing works

Group analysis and the subject factor in functional magnetic resonance imaging: Analysis of fifty right‐handed healthy subjects in a semantic language task

Seghier, M. L., Lazeyras, F., Pegna, A. J., Annoni, J., & Khateb, A. (2007) · Human Brain Mapping · doi:10.1002/hbm.20410 · Cited by 59 · see citing works

The impact of temporal regularization on estimates of the BOLD hemodynamic response function: A comparative analysis

Casanova, R., Ryali, S., Serences, J. T., Yang, L. L., Kraft, R., Laurienti, P. J., & Maldjian, J. A. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.01.011 · Cited by 46 · see citing works

Applying New Approaches From Cognitive Neuroscience to Enhance Drug Development for the Treatment of Impaired Cognition in Schizophrenia

Carter, C. S. (2005) · Schizophrenia Bulletin · doi:10.1093/schbul/sbi046 · Cited by 46 · see citing works

Evaluation of mixed effects in event-related fMRI studies: impact of first-level design and filtering

Bianciardi, M., Cerasa, A., Patria, F., & Hagberg, G. E. (2004) · NeuroImage · doi:10.1016/j.neuroimage.2004.02.039 · Cited by 28 · see citing works

Multivariate strategies in functional magnetic resonance imaging

Hansen, L. K. (2007) · Brain and Language · doi:10.1016/j.bandl.2006.12.004 · Cited by 24 · see citing works

Diagnosis of single‐subject and group fMRI data with SPMd

Zhang, H., Luo, W., & Nichols, T. E. (2006) · Human Brain Mapping · doi:10.1002/hbm.20253 · Cited by 23 · see citing works

The assessment of neurological systems with functional imaging

Eidelberg, D. (2006) · Brain and Language · doi:10.1016/j.bandl.2006.06.010 · Cited by 11 · see citing works

Polishing the Windows of the Mind

Carter, C. S., & Pine, D. S. (2006) · American Journal of Psychiatry · doi:10.1176/ajp.2006.163.5.761 · Cited by 7 · see citing works

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Preventing Alzheimer’s disease-related gray matter atrophy by B-vitamin treatment

Douaud, G., Refsum, H., de Jager, C. A., Jacoby, R. J., Nichols, T. E., Smith, S. M., & Smith, A. D. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1301816110 · Cited by 515 · see citing works

A developmental examination of amygdala response to facial expressions

Guyer, A. E., Monk, C. S., McClure-Tone, E. B., Nelson, E. E., Roberson-Nay, R., Adler, A. D., Fromm, S. J., Leibenluft, E., Pine, D. S., & Ernst, M. (2008) · Journal of Cognitive Neuroscience · doi:10.1162/jocn.2008.20114 · Cited by 357 · see citing works

Theoretical, Statistical, and Practical Perspectives on Pattern-based Classification Approaches to the Analysis of Functional Neuroimaging Data

O’Toole, A. J., Jiang, F., Abdi, H., Pénard, N., Dunlop, J. P., & Parent, M. A. (2007) · Journal of Cognitive Neuroscience · doi:10.1162/jocn.2007.19.11.1735 · Cited by 238 · see citing works

Attention biases, anxiety, and development: toward or away from threats or rewards?

Shechner, T., Britton, J. C., Pérez‐Edgar, K. E., Bar‐Haim, Y., Monique Ernst, D., Fox, N. A., Leibenluft, E., & Pine, D. S. (2011) · Depression and Anxiety · doi:10.1002/da.20914 · Cited by 231 · see citing works

The functional neuroanatomy of symptom dimensions in schizophrenia: A qualitative and quantitative review of a persistent question

Goghari, V. M., Sponheim, S. R., & MacDonald, A. W. (2009) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2009.09.004 · Cited by 224 · see citing works

Response to Learned Threat: An fMRI Study in Adolescent and Adult Anxiety

Britton, J. C., Grillon, C., Lissek, S. M., Norcross, M. A., Szuhany, K. L., Chen, G., Ernst, M., Nelson, E. E., Leibenluft, E., Shechner, T., et al. (2013) · American Journal of Psychiatry · doi:10.1176/appi.ajp.2013.12050651 · Cited by 180 · see citing works

Methylphenidate Normalizes Frontocingulate Underactivation During Error Processing in Attention-Deficit/Hyperactivity Disorder

Rubia, K., Halari, R., Mohammad, A.-M., Taylor, E., & Brammer, M. (2011) · Biological Psychiatry · doi:10.1016/j.biopsych.2011.04.018 · Cited by 171 · see citing works

fMRI abnormalities in dorsolateral prefrontal cortex during a working memory task in manic, euthymic and depressed bipolar subjects

Townsend, J. D., Bookheimer, S. Y., Foland‐Ross, L. C., Sugar, C. A., & Altshuler, L. L. (2010) · Psychiatry Research Neuroimaging · doi:10.1016/j.pscychresns.2009.11.010 · Cited by 145 · see citing works

Dissociable networks involved in spatial and temporal order source retrieval

Ekstrom, A. D., Copara, M. S., Isham, E. A., Wang, W.-C., & Yonelinas, A. P. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2011.02.033 · Cited by 135 · see citing works

The multimodal connectivity of the hippocampal complex in auditory and visual hallucinations

Amad, A., Cachia, A., Gorwood, P. A. P. M., Pins, D., Delmaire, C., Rolland, B., Mondino, M., Thomas, P., & Jardri, R. (2013) · Molecular Psychiatry · doi:10.1038/mp.2012.181 · Cited by 137 · see citing works

Distinct processing of ambiguous speech in people with non-clinical auditory verbal hallucinations

Alderson-Day, B., Lima, C. F., Evans, S., Krishnan, S., Shanmugalingam, P., Fernyhough, C., & Scott, S. K. (2017) · Brain · doi:10.1093/brain/awx206 · Cited by 108 · see citing works

Probabilistic reinforcement learning in adults with autism spectrum disorders

Solomon, M., Smith, A. C., Frank, M. J., Ly, S., & Carter, C. S. (2011) · Autism Research · doi:10.1002/aur.177 · Cited by 97 · see citing works

Neural changes with attention bias modification for anxiety: a randomized trial.

Britton, J. C., Suway, J. G., Clementi, M., Fox, N., Pine, D., & Bar-Haim, Y. (2015) · Social Cognitive and Affective Neuroscience · doi:10.1093/scan/nsu141 · Cited by 79 · see citing works

Neural stress reactivity relates to smoking outcomes and differentiates between mindfulness and cognitive-behavioral treatments

Kober, H., Brewer, J. A., Height, K. L., & Sinha, R. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2016.09.042 · Cited by 75 · see citing works

Affective context interferes with brain responses during cognitive processing in borderline personality disorder: fMRI evidence

Soloff, P. H., White, R. T., Omari, A. A., Ramaseshan, K. S., & Diwadkar, V. A. (2015) · Psychiatry Research Neuroimaging · doi:10.1016/j.pscychresns.2015.04.006 · Cited by 68 · see citing works

Motor system dysfunction in the schizophrenia diathesis: Neural systems to neurotransmitters

Abboud, R., Noronha, C., & Diwadkar, V. A. (2017) · European Psychiatry · doi:10.1016/j.eurpsy.2017.04.004 · Cited by 62 · see citing works

A Preliminary Study of DBH (Encoding Dopamine Beta-Hydroxylase) Genetic Variation and Neural Correlates of Emotional and Motivational Processing in Individuals With and Without Pathological Gambling

Yang, B., Balodis, I. M., Lacadie, C., Xu, J., & Potenza, M. N. (2016) · Journal of Behavioral Addictions · doi:10.1556/2006.5.2016.026 · Cited by 59 · see citing works

Prefrontal activation during inhibitory control measured by near-infrared spectroscopy for differentiating between autism spectrum disorders and attention deficit hyperactivity disorder in adults

Ishii‐Takahashi, A., Takizawa, R., Nishimura, Y., Kawakubo, Y., Kuwabara, H., Matsubayashi, J., Hamada, K., Okuhata, S., Yahata, N., Igarashi, T., et al. (2013) · NeuroImage Clinical · doi:10.1016/j.nicl.2013.10.002 · Cited by 58 · see citing works

Abnormalities of cerebral blood flow in multiple sclerosis: A pseudocontinuous arterial spin labeling MRI study

Ota, M., Sato, N., Nakata, Y., Ito, K., Kamiya, K., Maikusa, N., Ogawa, M., Okamoto, T., Obu, S., Noda, T., et al. (2013) · Magnetic Resonance Imaging · doi:10.1016/j.mri.2013.03.016 · Cited by 56 · see citing works

Early-Childhood Social Reticence Predicts Brain Function in Preadolescent Youths During Distinct Forms of Peer Evaluation

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Enhancing the Informativeness and Replicability of Imaging Genomics Studies

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