Fungicide-tolerant persister formation during cryptococcal pulmonary infection
Open accessAbstract
Bacterial persisters, a subpopulation of genetically susceptible cells that are normally dormant and tolerant to bactericides, have been studied extensively because of their clinical importance. In comparison, much less is known about the determinants underlying fungicide-tolerant fungal persister formation in vivo. Here, we report that during mouse lung infection, Cryptococcus neoformans forms persisters that are highly tolerant to amphotericin B (AmB), the standard of care for treating cryptococcosis. By exploring stationary-phase indicator molecules and developing single-cell tracking strategies, we show that in the lung, AmB persisters are enriched in cryptococcal cells that abundantly produce stationary-phase molecules. The antioxidant ergothioneine plays a specific and key role in AmB persistence, which is conserved in phylogenetically distant fungi. Furthermore, the antidepressant sertraline (SRT) shows potent activity specifically against cryptococcal AmB persisters. Our results provide evidence for and the determinant of AmB-tolerant persister formation in pulmonary cryptococcosis, which has potential clinical significance.
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In a mouse model of pulmonary cryptococcosis, ergothioneine and its encoding gene EGT1 were significantly overexpressed in AmB persisters.
“Moreover, a recent study using a mouse model of pulmonary cryptococcosis found that ergothioneine and its encoding gene, EGT1, were significantly overexpressed in AmB persisters.”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
The Results (Figure 5C) show significantly higher ergothioneine-associated signals in mouse-lung cells with high Sps1 expression, a population enriched for AmB persisters. The Results also report significantly higher EGT1 expression in stationary-phase cells than in early-exponential-phase cells (Table S1), but do not establish that EGT1 was overexpressed in persisters from the mouse lungs. The claim conflates those populations and measurements. (LLM, conf=0.86)
Experimental — accuracy not yet measuredThe EGT gene, responsible for ergothioneine synthesis, plays a critical role in regulating AmB susceptibility.
“This provides insight into the critical role of the EGT gene, responsible for the synthesis of ergothioneine, in regulating AmB susceptibility [112].”
From Insight into the Mechanisms and Clinical Relevance of Antifungal Heteroresistance (2025) · cites this paper as [112]
The Results show that EGT1 is essential for ergothioneine production and that deleting it greatly reduces survival of stationary-phase cryptococcal cells under AmB treatment. The claim is broader than the finding: the Results report an unchanged AmB MIC, and the Discussion describes EGT1's role as specific to persistence rather than AmB resistance. (LLM, conf=0.87)
Experimental — accuracy not yet measuredReduced ATP synthesis due to limited respiration may be a key mechanism of AmB-tolerant Cryptococcus neoformans persister formation.
“A recent study has found that reduced ATP synthesis due to limited respiration may be a key mechanism of AmB-tolerant Cryptococcus neoformans persisters formation [3].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
Dormant cells have been observed in various cases of antifungal persistence, such as AmB-tolerant C. albicans biofilms and a mouse model of pulmonary cryptococcosis.
“Dormant cells have been observed in various cases of antifungal persistence, such as in AmB-tolerant C. albicans biofilms and in a mouse model of pulmonary cryptococcosis [3,33].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
Sertraline demonstrated satisfactory anti-persistence effect both in vitro and in vivo in a study of Cryptococcus persisters.
“In a study of Cryptococcus persisters, an antidepressant drug sertraline demonstrated satisfactory anti-persistence effect both in vitro and in vivo [3].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
Sps1 and ergothioneine can both reflect the level of Cryptococcus persistence, both in vitro and in vivo.
“In a recent research, Sps1(encoded by gene CNAG_00848, named stationary-phase specific indicator 1) detected by fluorescence-activated cell sorting and ergothioneine (provide protection in reactive oxygen species) evaluated by Raman spectroscopy can both reflect the level of Cryptococcus persistence, both in vitro and in vivo [3].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
Antifungal persistence has been observed in vivo in a few studies using animal models.
“Antifungal persistence has been observed in vivo in a few studies using animal models [3,39,48].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
AmB-tolerant persisters were found in a Cryptococcus pulmonary infection mouse model.
“and AmB-tolerant persisters were found in Cryptococcus pulmonary infection mouse model [3].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
Ergothioneine works synergically with glutathione to enhance tolerance to ROS, thereby supporting persistence in stationary-phase cells.
“Ergothioneine works synergically with glutathione to enhance tolerance to ROS, thereby supporting persistence in stationary-phase cells [3].”
From Antifungal persistence: Clinical relevance and mechanisms (2025) · cites this paper as [3]
AmB-tolerant persisters are enriched in C. neoformans cells with high levels of Sps1 and ergothioneine.
“Ke et al. constructed a mouse model of pulmonary infection and demonstrated that AmB-tolerant persisters are enriched in C. neoformans cells with high levels of the stationary-phase protein Sps1 and the metabolic marker ergothioneine [112].”
From Insight into the Mechanisms and Clinical Relevance of Antifungal Heteroresistance (2025) · cites this paper as [112]
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Monitoring kinetic processes of drugs and metabolites: Surface-enhanced Raman spectroscopy
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New antifungal strategies and drug development against WHO critical priority fungal pathogens
Li, Y., Liu, Y., Jiang, Y., Yang, Y., Ni, W., Zhang, W., & Tan, L. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1662442 · Cited by 36 · see citing works
Self-citationPani, S., & Mohapatra, S. S. (2024) · Archives of Microbiology · doi:10.1007/s00203-024-04173-3 · Cited by 22 · see citing works
Antifungal resistance: Emerging mechanisms and implications (Review)
Kadariswantiningsih, I. N., Empitu, M. A., Santosa, T., & Alimu, Y. (2025) · Molecular Medicine Reports · doi:10.3892/mmr.2025.13612 · Cited by 24 · see citing works
Recent progress in mushroom-derived ergothioneine: Techniques and applications
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Yu, P., Zhou, M., Yu, D., Zhang, Z., Ye, S., Yu, Y., Sun, X., Li, S., & Hu, C. (2025) · Journal of Advanced Research · doi:10.1016/j.jare.2025.01.046 · Cited by 20 · see citing works
Pruitt, H. M., Zhu, J., Riley, S. P., & Shi, M. (2025) · Journal of Fungi · doi:10.3390/jof11030236 · Cited by 20 · see citing works
Is Cryptococcus neoformans a pleomorphic fungus?
Brown, J. C. S., & Ballou, E. R. (2024) · Current Opinion in Microbiology · doi:10.1016/j.mib.2024.102539 · Cited by 15 · see citing works
Insight into the Mechanisms and Clinical Relevance of Antifungal Heteroresistance
Su, Y., Li, Y., Yi, Q., Xu, Y., Sun, T., & Li, Y. (2025) · Journal of Fungi · doi:10.3390/jof11020143 · Cited by 18 · see citing works
“Ke et al. constructed a mouse model of pulmonary infection and demonstrated that AmB-tolerant persisters are enriched in C. neoformans cells with high levels of the stationary-phase protein Sps1 and the metabolic marker ergothioneine [112].”
Briner, S. L., & Doering, T. L. (2025) · Current Biology · doi:10.1016/j.cub.2025.04.008 · Cited by 14 · see citing works
Overcoming Global Antifungal Challenges: Medical and Agricultural Aspects
Galgóczy, L. (2025) · ACS Bio & Med Chem Au · doi:10.1021/acsbiomedchemau.5c00103 · Cited by 13 · see citing works
Balancing act: thiol-based redox regulation drives fungal pathogenesis
Black, B., Kussat, T., & Kronstad, J. W. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2025.06.003 · Cited by 10 · see citing works
Population heterogeneity in Cryptococcus neoformans: Impact on pathogenesis
Agrawal, R., de Castro, R. J. A., Sturny-Leclère, A., & Alanio, A. (2024) · PLoS Pathogens · doi:10.1371/journal.ppat.1012332 · Cited by 8 · see citing works
Persister cells in human fungal pathogens
Xie, Y., Ke, W., Wong, K. H., & Wang, L. (2025) · PLoS Pathogens · doi:10.1371/journal.ppat.1013483 · Cited by 9 · see citing works
Self-citationAntifungal persistence: Clinical relevance and mechanisms
Wang, R., Lv, J., Chen, L., Zhao, Y., & Du, H. (2025) · PLoS pathogens · doi:10.1371/journal.ppat.1013456 · Cited by 12 · see citing works
“Ergothioneine works synergically with glutathione to enhance tolerance to ROS, thereby supporting persistence in stationary-phase cells [3].”
InfluentialSelf-citationZheng, L., Xu, Y., Wang, C., Dong, Y., & Guo, L. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1470454 · Cited by 7 · see citing works
Rocha, C. H. L., Rocha, F. M. G., Sanches, P. R., Rossi, A., & Martinez-Rossi, N. M. (2025) · Genes · doi:10.3390/genes16020146 · Cited by 5 · see citing works
Challenges posed by fungi to host immunity: Mechanisms of immune evasion
Gu, Y., Wang, H., Wang, Y.-S., Wang, L., & Jia, X.-M. (2026) · hLife · doi:10.1016/j.hlife.2025.12.008 · Cited by 5 · see citing works
Self-citationEmergence of traits in human fungal pathogens
Ma, X., Cui, J., Tao, Y., Liao, G., & Wang, L. (2026) · Trends in Microbiology · doi:10.1016/j.tim.2025.12.005 · Cited by 4 · see citing works
Self-citationAdvancing cryptococcal treatment: The role of nanoparticles in mitigating antifungal resistance
Lathakumari, R. H., Vajravelu, L. K., Satheesan, A., & Thulukanam, J. (2024) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2024.100323 · Cited by 4 · see citing works
Application of a One-Step method for rapid detection of nucleic acids from fungi
Yuan, J., Qiao, F., Chang, W., Yang, Y., Song, L., Liu, X., Tian, W., Ren, J., & Liu, X. (2025) · Mycology: An International Journal on Fungal Biology · doi:10.1080/21501203.2025.2471979 · Cited by 4 · see citing works
Zheng, L., Dong, Y., Wang, J., Jia, Y., Wang, W., Xu, Y., & Guo, L. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1519323 · Cited by 6 · see citing works
Exploring emerging drug responses in Cryptococcus
Liu, W., Gao, Y., & Ding, C. (2024) · Trends in Microbiology · doi:10.1016/j.tim.2024.07.002 · Cited by 3 · see citing works
Genetics and humoral responses of the immune system to Aspergillus fumigatus
Sanya, D. R. A., Jayachandran, K., & Onésime, D. (2025) · Molecular Immunology · doi:10.1016/j.molimm.2025.06.007 · Cited by 3 · see citing works
Günther, A., Burmester, A., Fabri, M., Tittelbach, J., & Wiegand, C. (2025) · Journal of Fungi · doi:10.3390/jof11100698 · Cited by 2 · see citing works
Wang, G., Feng, C., Ma, Z., Zhao, L., Yosri, M., Wang, Y., Gao, X., Zhu, W., Li, H., Song, H., et al. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116658 · Cited by 2 · see citing works
Self-citationCytrynbaum, E. G., & McClean, M. N. (2025) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2025.115740 · Cited by 1 · see citing works
Mechanisms of chronic infection: The multificated strategy of Cryptococcus
Qian, S., Fang, D., Fu, H., Wu, W., & Du, W. (2025) · Fungal Biology Reviews · doi:10.1016/j.fbr.2025.100469 · Cited by 1 · see citing works
Liu, X., Cui, C., Wang, P., Wang, H., Zhai, Y., Yang, Y., Chen, J., Liu, W., Dong, Z., Zhou, D., et al. (2026) · Veterinary Microbiology · doi:10.1016/j.vetmic.2026.110949 · Cited by 1 · see citing works
Self-citationHalliwell, B. B. (2026) · American Journal of Clinical Nutrition · doi:10.1016/j.ajcnut.2026.101488 · Cited by 1 · see citing works
Research progress on responses and survival strategies of bacteria under oxidative stress
Yang, J., SUN, Y., Zhao, F., & Liao, H. (2026) · Microbial Pathogenesis · doi:10.1016/j.micpath.2026.108696 · Cited by 1 · see citing works
Joly‐Tonetti, N., Legouffe, R., Tomezyk, A., Gumez, C., Gaudin, M., Bonnel, D., & Schaller, M. (2024) · Infectious Diseases and Therapy · doi:10.1007/s40121-024-00979-2 · Cited by 1 · see citing works
CsdA-LaeB hub governs Aspergillus fumigatus virulence via FqC biosynthesisPreprint
Yin, W., Song, Z., Zhang, H., Ye, L., Lei, Y., Wang, L., Liu, X., Soto, N. M. M., Keller, N. P., Oakley, B. R., et al. (2025) · Research Square · doi:10.21203/rs.3.rs-6615529/v1
Self-citationFang, D., Su, B., Cheng, G., Wang, Q., Lan, K., Wang, H., Zhou, P., Bi, Y., Liu, C., Dou, D., et al. (2025) · 中国科学基金 · doi:10.3724/bnsfc-2024.12.15.0002
Self-citationBlack, B., Kussat, T., Lee, C. W. J., Qu, X., Hu, G., Caza, M., & Kronstad, J. W. (2025) · ACS Sensors · doi:10.1021/acssensors.5c01883
Two cases of refractory Cryptococcus gatti (C gatti) infection and literature review: Case report
Zeng, Y., Xiong, T., Xiang, W., Zhang, J., Li, L., Yuan, W., He, W., Deng, B., & Xu, H. (2026) · Medicine · doi:10.1097/md.0000000000046999
Bacterial persisters: from mechanism modules to target prioritization and inhibitor development
Chen, Z., Zhang, R., Dai, R., Zhou, Q., Pan, Y., & Huang, L. (2026) · Microbial Pathogenesis · doi:10.1016/j.micpath.2026.108472
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Self-citationCong, L., Lin, Z., Li, Q., Wang, W., & Zhang, S. (2026) · mBio · doi:10.1128/mbio.00896-26
Prevalence and phenotypic features of voriconazole persistence in Aspergillus fumigatus
Li, X., Zhou, Z., Lin, H., Guo, J., Wu, W., Goldman, G. H., Lu, L., & Zhang, Y. (2026) · Mycology: An International Journal on Fungal Biology · doi:10.1080/21501203.2026.2679240
Pimenta, G. R., Gualque, M. W. D. L., Siqueto, M. J., Silva, S. D. M., Regasini, L. O., Mendes‐Giannini, M. J. S., & Fusco‐Almeida, A. M. (2026) · Microbiology Spectrum · doi:10.1128/spectrum.00203-26
De novo lysine synthesis is required for the virulence of Cryptococcus neoformans
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Self-citationRepurposing FDA‐Approved Drugs to Inhibit Fungal PPTases for Broad‐Spectrum Synergy
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Self-citationThe common evolution of fungicide persistence in cryptococcosis patientsPreprint
Xie, Y., Ke, W., Fan, X., Xu, H., Wang, W., Zeng, Z., Zhang, N., Ma, H., Tang, Z., Zhu, H., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.26.747313
Self-citationTaş, E., Çetin, B., Yılmazer, A. N., & Işık, T. (2026) · Molecular Biology Reports · doi:10.1007/s11033-026-12737-3
- Authors
- Ke, W., Xie, Y., Chen, Y., Ding, H., Ye, L., Qiu, H., Li, H., Zhang, L., Chen, L., Tian, X., Shen, Z., Song, Z., Fan, X., Zong, J.-F., Guo, Z., Ma, X., Xiao, M., Liao, G., Liu, C. H., Yin, W.-B., Dong, Z., Yang, F., Jiang, Y.-Y., Perlin, D. S., Chen, Y., Fu, Y. V., & Wang, L.
- Affiliations
- Chinese Academy of Sciences (CN)
- Tongji University (CN)
- Capital Medical University (CN)
- Southwest University (CN)
- Chinese Academy of Medical Sciences & Peking Union Medical College (CN)
- Hackensack Meridian Health (US)
- Corresponding author
- Fu, Yu V
- Wang, Linqi
- ORCID
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2024-02
- Volume
- 32
- Issue
- 2
- Pages
- 276-289.e7
- ISSN
- 1931-3128 (ISSN-L)
- OpenAlex
- W4390753339
- Cited by
- 45
- References
- 79
- Citations by year
- 2026: 15 · 2025: 21 · 2024: 9
- FWCI
- 13.65
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 379 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Cell Host & Microbe (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Chinese Academy of Sciences
- Key Technologies Research and Development Program (2021YFC2300400, 2022YFC2303000, 2022YFC2303100)
- National Key Research and Development Program of China
- National Natural Science Foundation of China (32270206)
- Topics
- Health Sciences › Medicine › Epidemiology › Fungal Infections and Studies
- Health Sciences › Medicine › Infectious Diseases › Antifungal resistance and susceptibility
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Keywords
- Cryptococcus neoformans, pulmonary cryptococcosis, fungicide tolerance, ergothioneine, sertraline, single-cell tracking, pulmonary infection, antifungal resistance
- MeSH terms
- Amphotericin B, Animals, Anti-Bacterial Agents, Antifungal Agents, Cryptococcosis, Cryptococcus neoformans, Fungicides, Industrial, Pneumonia, Mice
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