Pangenomes of human gut microbiota uncover links between genetic diversity and stress response

Prokka: rapid prokaryotic genome annotation

Seemann, T. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu153 · Cited by 18,512 · see citing works

CheckM: Assessing the Quality of Microbial Genomes Recovered from Isolates, Single Cells, and Metagenomes

Parks, D. H., Imelfort, M., Skennerton, C. T., Hugenholtz, P., & Tyson, G. W. (2015) · Genome Research · doi:10.1101/gr.186072.114 · Cited by 12,496 · see citing works

Antibiotic resistance threats in the United States, 2019

(U.S.), C. F. D. C. A. P. (2019) · doi:10.15620/cdc:82532 · Cited by 5,782 · see citing works

Roary: rapid large-scale prokaryote pan genome analysis

Page, A. J., Cummins, C. A., Hunt, M., Wong, V. K., Reuter, S., Holden, M. T. G., Fookes, M., Falush, D., Keane, J. A., & Parkhill, J. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv421 · Cited by 5,736 · see citing works

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Huerta‐Cepas, J., Szklarczyk, D., Heller, D., Hernández-Plaza, A., Forslund, S. K., Cook, H., Mende, D. R., Letunić, I., Rattei, T., Jensen, L. J., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky1085 · Cited by 4,943 · see citing works

The Human Intestinal Microbiome in Health and Disease

Lynch, S. V., & Pedersen, O. (2016) · New England Journal of Medicine · doi:10.1056/nejmra1600266 · Cited by 3,637 · see citing works

Mash: fast genome and metagenome distance estimation using MinHash

(2016) · Genome biology · doi:10.1186/s13059-016-0997-x · Cited by 3,373 · see citing works

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

Jia, B., Raphenya, A. R., Alcock, B. P., Waglechner, N., Guo, P., Tsang, K. K., Lago, B. A., Dave, B. M., Pereira, S. K., Sharma, A. N., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1004 · Cited by 2,671 · see citing works

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

The Genome Standards Consortium, Bowers, R. M., Kyrpides, N. C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T. B. K., Schulz, F., Jarett, J., Rivers, A. R., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.3893 · Cited by 2,624 · see citing works

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

Parks, D. H., Chuvochina, M., Rinke, C., Mussig, A. J., Chaumeil, P.-A., & Hugenholtz, P. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkab776 · Cited by 2,402 · see citing works

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Beghini, F., McIver, L. J., Blanco-Míguez, A., Dubois, L., Asnicar, F., Maharjan, S., Mailyan, A., Manghi, P., Scholz, M., Thomas, A. M., et al. (2021) · eLife · doi:10.7554/elife.65088 · Cited by 2,303 · see citing works

CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning

Chklovski, A., Parks, D. H., Woodcroft, B. J., & Tyson, G. W. (2023) · Nature Methods · doi:10.1038/s41592-023-01940-w · Cited by 1,705 · see citing works

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Pasolli, E., Asnicar, F., Manara, S., Zolfo, M., Karcher, N., Armanini, F., Beghini, F., Manghi, P., Tett, A., Ghensi, P., et al. (2019) · Cell · doi:10.1016/j.cell.2019.01.001 · Cited by 1,591 · see citing works

ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes

Gupta, S. K., Padmanabhan, B. R., Diene, S. M., Lopez-Rojas, R., Kempf, M., Landraud, L., & Rolain, J.-M. (2014) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01310-13 · Cited by 1,476 · see citing works

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Blanco-Míguez, A., Beghini, F., Cumbo, F., McIver, L. J., Thompson, K. N., Zolfo, M., Manghi, P., Dubois, L., Huang, K. D., Thomas, A. M., et al. (2023) · Nature Biotechnology · doi:10.1038/s41587-023-01688-w · Cited by 1,442 · see citing works

A unified catalog of 204,938 reference genomes from the human gut microbiome

Almeida, A., Nayfach, S., Boland, M., Strozzi, F., Beracochea, M., Shi, Z. J., Pollard, K. S., Sakharova, E., Parks, D. H., Hugenholtz, P., et al. (2021) · Nature Biotechnology · doi:10.1038/s41587-020-0603-3 · Cited by 1,367 · see citing works

Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation

Browne, H. P., Forster, S. C., Anonye, B. O., Kumar, N., Neville, B. A., Stares, M. D., Goulding, D., & Lawley, T. D. (2016) · Nature · doi:10.1038/nature17645 · Cited by 1,299 · see citing works

Ecology drives a global network of gene exchange connecting the human microbiome

Smillie, C. S., Smith, M. B., Friedman, J., Cordero, O. X., David, L. A., & Alm, E. J. (2011) · Nature · doi:10.1038/nature10571 · Cited by 953 · see citing works

The gut microbiome as a modulator of healthy ageing

Ghosh, T. S., Shanahan, F., & O’Toole, P. W. (2022) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-022-00605-x · Cited by 817 · see citing works

New insights from uncultivated genomes of the global human gut microbiome

Nayfach, S., Shi, Z. J., Seshadri, R., Pollard, K. S., & Kyrpides, N. C. (2019) · Nature · doi:10.1038/s41586-019-1058-x · Cited by 737 · see citing works

The Spo0A regulon of Bacillus subtilis

Molle, V., Fujita, M., Jensen, S. T., Eichenberger, P., González‐Pastor, J. E., Liu, J. S., & Losick, R. M. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03818.x · Cited by 560 · see citing works

Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces

Zaura, E., Brandt, B. W., de Mattos, M. J. T., Buijs, M. J., Caspers, M. P. M., Rashid, M.-U., Weintraub, A., Nord, C. E., Savell, A., Hu, Y., et al. (2015) · mBio · doi:10.1128/mbio.01693-15 · Cited by 449 · see citing works

The person-to-person transmission landscape of the gut and oral microbiomes

Valles-Colomer, M., Blanco-Míguez, A., Manghi, P., Asnicar, F., Dubois, L., Golzato, D., Armanini, F., Cumbo, F., Huang, K. D., Manara, S., et al. (2023) · Nature · doi:10.1038/s41586-022-05620-1 · Cited by 449 · see citing works

Diversity within Species: Interpreting Strains in Microbiomes

Van Rossum, T., Ferretti, P., Maistrenko, O. M., & Bork, P. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0368-1 · Cited by 441 · see citing works

Why prokaryotes have pangenomes

McInerney, J. O., McNally, A., & O’Connell, M. J. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2017.40 · Cited by 403 · see citing works

Antibiotic resistance in Enterobacteriaceae: mechanisms and clinical implications

Iredell, J. R., Brown, J. C., & Tagg, K. A. (2016) · BMJ · doi:10.1136/bmj.h6420 · Cited by 392 · see citing works

Global Fluoroquinolone Resistance Epidemiology and Implictions for Clinical Use

Dalhoff, A. (2012) · Interdisciplinary Perspectives on Infectious Diseases · doi:10.1155/2012/976273 · Cited by 357 · see citing works

How biological sex of the host shapes its gut microbiota

Valeri, F., & Endres, K. (2021) · Frontiers in Neuroendocrinology · doi:10.1016/j.yfrne.2021.100912 · Cited by 267 · see citing works

A next-generation beneficial microbe: Akkermansia muciniphila

Naito, Y., Uchiyama, K., & Takagi, T. (2018) · Journal of Clinical Biochemistry and Nutrition · doi:10.3164/jcbn.18-57 · Cited by 262 · see citing works

Trends and barriers to lateral gene transfer in prokaryotes

Popa, O., & Dagan, T. (2011) · Current Opinion in Microbiology · doi:10.1016/j.mib.2011.07.027 · Cited by 251 · see citing works

Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution

Neme, R., & Tautz, D. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-117 · Cited by 220 · see citing works

Akkermansia muciniphila ameliorates the age-related decline in colonic mucus thickness and attenuates immune activation in accelerated aging Ercc1−/Δ7 mice

van der Lugt, B., van Beek, A. A., Aalvink, S., Meijer, B., Sovran, B., Vermeij, W. P., Brandt, R. M. C., de Vos, W. M., Savelkoul, H. F. J., Steegenga, W. T., et al. (2019) · Immunity & Ageing · doi:10.1186/s12979-019-0145-z · Cited by 217 · see citing works

Tigecycline: First of a New Class of Antimicrobial Agents

Rose, W. E., & Rybak, M. J. (2006) · Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy · doi:10.1592/phco.26.8.1099 · Cited by 196 · see citing works

Protein synthesis and quality control in aging

Anisimova, A. S., Alexandrov, A. I., Makarova, N. E., Gladyshev, V. N., & Dmitriev, S. E. (2018) · Aging · doi:10.18632/aging.101721 · Cited by 172 · see citing works

Trends and Seasonal Variation in Outpatient Antibiotic Prescription Rates in the United States, 2006 to 2010

Suda, K. J., Hicks, L. A., Roberts, R. M., Hunkler, R. J., & Taylor, T. H. (2014) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02239-13 · Cited by 164 · see citing works

An expanded reference map of the human gut microbiome reveals hundreds of previously unknown species

Leviatan, S., Shoer, S., Rothschild, D., Gorodetski, M., & Segal, E. (2022) · Nature Communications · doi:10.1038/s41467-022-31502-1 · Cited by 162 · see citing works

Oral administration of Akkermansia muciniphila elevates systemic antiaging and anticancer metabolites

Grajeda-Iglesias, C., Durand, S., Daillère, R., Iribarren, K., Lemaitre, F., Derosa, L., Aprahamian, F., Bossut, N., Nirmalathasan, N., Madeo, F., et al. (2021) · Aging · doi:10.18632/aging.202739 · Cited by 161 · see citing works

Clinical challenges treatingStenotrophomonas maltophiliainfections: an update

Mojica, M. F., Humphries, R. M., LiPuma, J. J., Mathers, A. J., Rao, G. G., Shelburne, S. A., Fouts, D. E., van Duin, D., & Bonomo, R. A. (2022) · JAC-Antimicrobial Resistance · doi:10.1093/jacamr/dlac040 · Cited by 161 · see citing works

First Steps in the Analysis of Prokaryotic Pan-Genomes

Costa, S. S., Guimarães, L. C., Silva, A., Soares, S. D. C., & Baraúna, R. A. (2020) · Bioinformatics and Biology Insights · doi:10.1177/1177932220938064 · Cited by 158 · see citing works

Gene Size Matters: An Analysis of Gene Length in the Human Genome

Lopes, I., Altab, G., Raina, P., & de Magalhães, J. P. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.559998 · Cited by 152 · see citing works

Migration and horizontal gene transfer divide microbial genomes into multiple niches

Niehus, R., Mitri, S., Fletcher, A. G., & Foster, K. R. (2015) · Nature Communications · doi:10.1038/ncomms9924 · Cited by 150 · see citing works

Sex and strain dependent differences in mucosal immunology and microbiota composition in mice

Elderman, M. E., Hugenholtz, F., Belzer, C., Boekschoten, M. V., van Beek, A. A., de Haan, B., Savelkoul, H. F. J., de Vos, P., & Faas, M. M. (2018) · Biology of Sex Differences · doi:10.1186/s13293-018-0186-6 · Cited by 149 · see citing works

Mechanisms of antimicrobial resistance in Stenotrophomonas maltophilia: a review of current knowledge

Gil‐Gil, T., Martínez, J. L., & Blanco, P. (2020) · Expert Review of Anti-infective Therapy · doi:10.1080/14787210.2020.1730178 · Cited by 149 · see citing works

Alterations of the translation apparatus during aging and stress response

Gonskikh, Y., & Polacek, N. (2017) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2017.04.003 · Cited by 140 · see citing works

Population Genetics in the Human Microbiome

Garud, N. R., & Pollard, K. S. (2019) · Trends in Genetics · doi:10.1016/j.tig.2019.10.010 · Cited by 137 · see citing works

Response Regulators SrrA and SskA Are Central Components of a Phosphorelay System Involved in Stress Signal Transduction and Asexual Sporulation in Aspergillus nidulans

Vargas‐Pérez, I., Sánchez, O., Kawasaki, L., Georgellis, D., & Aguirre, J. (2007) · Eukaryotic Cell · doi:10.1128/ec.00085-07 · Cited by 131 · see citing works

Gut microbiota remodeling improves natural aging-related disorders through Akkermansia muciniphila and its derived acetic acid

Ma, J., Liu, Z., Gao, X., Bao, Y., Hong, Y., He, X., Zhu, W., Li, Y., Huang, W., Zheng, N., et al. (2023) · Pharmacological Research · doi:10.1016/j.phrs.2023.106687 · Cited by 131 · see citing works

Staphylococcus Epidermidis as a Cause of Bacteremia

Kleinschmidt, S. L., Huygens, F., Faoagali, J., et al. (2015) · Future Microbiology · doi:10.2217/fmb.15.98 · Cited by 128 · see citing works

Ribosome heterogeneity: another level of complexity in bacterial translation regulation

Byrgazov, K., Vesper, O., & Moll, I. (2013) · Current Opinion in Microbiology · doi:10.1016/j.mib.2013.01.009 · Cited by 123 · see citing works

Sexual dimorphism in glucose metabolism is shaped by androgen-driven gut microbiome

Gao, A., Su, J., Liu, R., Zhao, S., Wen, L., Xu, X., Li, D., Shi, J., Gu, B., Zhang, J., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-27187-7 · Cited by 121 · see citing works

On the evolution of chaperones and cochaperones and the expansion of proteomes across the Tree of Life

Rebeaud, M. E., Mallik, S., Goloubinoff, P., & Tawfik, D. S. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2020885118 · Cited by 116 · see citing works

Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli

Christensen, D. G., Meyer, J. G., Baumgartner, J. T., D’Souza, A. K., Nelson, W. C., Payne, S., Kuhn, M. L., Schilling, B., & Wolfe, A. J. (2018) · mBio · doi:10.1128/mbio.01905-18 · Cited by 111 · see citing works

Nucleotide sequence and regulation of a new putative cell wall hydrolase gene, cwlD, which affects germination in Bacillus subtilis.

Sekiguchi, J., Akeo, K., Yamamoto, H., Khasanov, F. K., Alonso, J. C., & Kuroda, A. (1995) · Journal of Bacteriology · doi:10.1128/jb.177.19.5582-5589.1995 · Cited by 104 · see citing works

Akkermansia muciniphila, which is enriched in the gut microbiota by metformin, improves cognitive function in aged mice by reducing the proinflammatory cytokine interleukin-6

Zhu, X., Shen, J., Feng, S., Huang, C., Wang, H., Huo, F., & Liu, H. (2023) · Microbiome · doi:10.1186/s40168-023-01567-1 · Cited by 104 · see citing works

Hydrogen Sulphide: A Novel Endogenous Gasotransmitter Facilitates Erectile Function

Srilatha, B., Adaikan, P. G., Li, L., et al. (2007) · The Journal of Sexual Medicine · doi:10.1111/j.1743-6109.2007.00561.x · Cited by 102 · see citing works

Detection of resistance genes and susceptibility patterns in Bacteroides and Parabacteroides strains

Boente, R. F., Ferreira, L. Q., Falcão, L. S., Miranda, K. R., Guimarães, P. L. D. S., dos Santos-Filho, J., Vieira, J. M. B. D., Barroso, D. E., Émond, J.-P., Ferreira, E. D. O., et al. (2010) · Anaerobe · doi:10.1016/j.anaerobe.2010.02.003 · Cited by 102 · see citing works

Associations of the skin, oral and gut microbiome with aging, frailty and infection risk reservoirs in older adults

Larson, P. J., Zhou, W. L., Santiago, A., Driscoll, S., Fleming, E. S., Voigt, A. Y., Chun, O. K., Grady, J. J., Kuchel, G. A., Robison, J. T., et al. (2022) · Nature Aging · doi:10.1038/s43587-022-00287-9 · Cited by 100 · see citing works

Sex differences in the nitrate-nitrite-NO• pathway: Role of oral nitrate-reducing bacteria

Kapil, V., Rathod, K. S., Khambata, R. S., Bahra, M., Velmurugan, S., Purba, A., Watson, D., Barnes, M. R., Wade, W. G., & Ahluwalia, A. (2018) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2018.07.010 · Cited by 99 · see citing works

Gene length and expression level shape genomic noveltiesPreprint

Grishkevich, V., & Yanai, I. (2014) · Genome Research · doi:10.1101/gr.169722.113 · Cited by 90 · see citing works

Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp0 mutant of Bacillus subtilis triggers YvyD‐dependent dimerization of ribosome

Tagami, K., Nanamiya, H., Kazo, Y., Maehashi, M., Suzuki, S., Namba, E., Hoshiya, M., Hanai, R., Tozawa, Y., Morimoto, T., et al. (2012) · MicrobiologyOpen · doi:10.1002/mbo3.16 · Cited by 84 · see citing works

Sex hormones, intestinal inflammation, and the gut microbiome: Major influencers of the sexual dimorphisms in obesity

Brettle, H., Tran, V., Drummond, G. R., Franks, A. E., Petrovski, S., Vinh, A., & Jelinic, M. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.971048 · Cited by 78 · see citing works

Antibiotic susceptibility profiles of anaerobic pathogens in The Netherlands

Veloo, A. C. M., & Winkelhoff, A. J. V. (2014) · Anaerobe · doi:10.1016/j.anaerobe.2014.08.011 · Cited by 75 · see citing works

Identification of sporulation genes by genome-wide analysis of the σ E regulon of Bacillus subtilis

Feucht, A., Evans, L., & Errington, J. (2003) · Microbiology · doi:10.1099/mic.0.26413-0 · Cited by 74 · see citing works

Streptococcus pyogenes c-di-AMP Phosphodiesterase, GdpP, Influences SpeB Processing and Virulence

Cho, K. H., & Kang, S. O. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069425 · Cited by 71 · see citing works

Intra-Abdominal Infections Due to Comamonas kerstersii

Almuzara, M. N., Cittadini, R., Ocampo, C. V., et al. (2013) · Journal of Clinical Microbiology · doi:10.1128/jcm.00659-13 · Cited by 66 · see citing works

Antimicrobial Resistance in Enterococci

Garrido, A. M. (2014) · Journal of Infectious Diseases and Therapy · doi:10.4172/2332-0877.1000150 · Cited by 66 · see citing works

Fundamentals of Antimicrobial Pharmacokinetics and Pharmacodynamics

Vinks, A. A. T. M. M., Mouton, J. W., & Derendorf, H. (2013) · Springer eBooks · doi:10.1007/978-0-387-75613-4 · Cited by 62 · see citing works

Age-related changes in the gut microbiota and the core gut microbiome of healthy Thai humans

La-ongkham, O., Nakphaichit, M., Nakayama, J., Keawsompong, S., & Nitisinprasert, S. (2020) · 3 Biotech · doi:10.1007/s13205-020-02265-7 · Cited by 61 · see citing works

An Operon for a Putative ATP-Binding Cassette Transport System Involved in Acetoin Utilization of Bacillus subtilis

Yoshida, K., Fujita, Y., & Ehrlich, S. D. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.19.5454-5461.2000 · Cited by 58 · see citing works

Escalating antimicrobial resistance among Enterobacteriaceae: Focus on carbapenemases

Lynch, J. P., Clark, N. M., & Zhanel, G. G. (2021) · Expert Opinion on Pharmacotherapy · doi:10.1080/14656566.2021.1904891 · Cited by 58 · see citing works

Mechanisms and Applications of Bacterial Sporulation and Germination in the Intestine

Koopman, N., Remijas, L., Seppen, J., Setlow, P., & Brul, S. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23063405 · Cited by 56 · see citing works

Three Asparagine Synthetase Genes of Bacillus subtilis

Yoshida, K., Fujita, Y., & Ehrlich, S. D. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.19.6081-6091.1999 · Cited by 53 · see citing works

Bacteremia Caused by Comamonaskerstersii in a Patient with Diverticulosis

Opota, O., Ney, B., Zanetti, G., et al. (2013) · Journal of Clinical Microbiology · doi:10.1128/jcm.02942-13 · Cited by 52 · see citing works

Dietary methionine restriction improves gut microbiota composition and prevents cognitive impairment in d -galactose-induced aging mice

Xu, Y., Yang, Y., Li, B., Xie, Y., Shi, Y., & Le, G. (2022) · Food & Function · doi:10.1039/d2fo03366f · Cited by 49 · see citing works

Gut microbiota contributes to the methionine metabolism in host

Wu, X., Han, Z., Liu, B., Yu, D., Sun, J., Ge, L., Tang, W., & Liu, S. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1065668 · Cited by 48 · see citing works

Antimicrobial Peptides Demonstrate Activity against Resistant Bacterial Pathogens

Garvey, M. (2023) · Infectious Disease Reports · doi:10.3390/idr15040046 · Cited by 48 · see citing works

The MreB-Like Protein Mbl ofStreptomyces coelicolorA3(2) Depends on MreB for Proper Localization and Contributes to Spore Wall Synthesis

Heichlinger, A., Ammelburg, M., Kleinschnitz, E., et al. (2011) · Journal of Bacteriology · doi:10.1128/jb.01100-10 · Cited by 47 · see citing works

Microbial Changes and Host Response in F344 Rat Colon Depending on Sex and Age Following a High-Fat Diet

Lee, S. M., Kim, N., Yoon, H., Nam, R. H., & Lee, D. H. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02236 · Cited by 47 · see citing works

SpoIVB and CtpB Are Both Forespore Signals in the Activation of the Sporulation Transcription Factor σKinBacillus subtilis

Campo, N., & Rudner, D. Z. (2007) · Journal of Bacteriology · doi:10.1128/jb.00399-07 · Cited by 44 · see citing works

[Bacteria isolated from surgical infections and its susceptibilities to antimicrobial agents - Special references to bacteria isolated between April 2011 and March 2012].

Shinagawa, N., Osanai, H., Hirata, K., et al. (1997) · PubMed · Cited by 42 · see citing works

Initial Characterization of Hydrogen Sulfide Effects in Female Sexual Function

Srilatha, B., Hu, L., Adaikan, G. P., et al. (2009) · The Journal of Sexual Medicine · doi:10.1111/j.1743-6109.2009.01291.x · Cited by 40 · see citing works

Protein translation paradox: Implications in translational regulation of aging

Kim, H. S., & Pickering, A. M. (2023) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2023.1129281 · Cited by 37 · see citing works

Ablation of the gut microbiota alleviates high-methionine diet-induced hyperhomocysteinemia and glucose intolerance in mice

Li, W., Jia, Y., Gong, Z., Zhao, D., Yu, F. H. Z., Fu, Y., Jiang, C., & Kong, W. (2023) · npj Science of Food · doi:10.1038/s41538-023-00212-3 · Cited by 36 · see citing works

The Role of Methionine-Rich Diet in Unhealthy Cerebrovascular and Brain Aging: Mechanisms and Implications for Cognitive Impairment

Ungvari, A., Gulej, R., Csík, B., Mukli, P., Negri, S., Tarantini, S., Yabluchanskiy, A., Benyó, Z., Csiszár, A., & Ungvari, Z. I. (2023) · Nutrients · doi:10.3390/nu15214662 · Cited by 34 · see citing works

Methionine Restriction Improves Gut Barrier Function by Reshaping Diurnal Rhythms of Inflammation-Related Microbes in Aged Mice

Ren, B., Wang, L., Mulati, A., Liu, Y., Liu, Z., & Liu, X. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.746592 · Cited by 33 · see citing works

Comamonas kerstersii bacteremia in a patient with acute perforated appendicitis

Zhou, Y., Ma, H., Dong, Z.-Y., et al. (2018) · Medicine · doi:10.1097/md.0000000000009296 · Cited by 31 · see citing works

Strong evidence for the adaptive walk model of gene evolution in Drosophila and Arabidopsis

Moutinho, A. F., Eyre‐Walker, A., & Dutheil, J. Y. (2022) · PLoS Biology · doi:10.1371/journal.pbio.3001775 · Cited by 31 · see citing works

Comamonas kerstersii and the Perforated Appendix

Biswas, J. S., Fitchett, J. R., & O’Hara, G. A. (2014) · Journal of Clinical Microbiology · doi:10.1128/jcm.00909-14 · Cited by 30 · see citing works

Transcriptional Profile during Deoxycholate-Induced Sporulation in a Clostridium perfringens Isolate Causing Foodborne Illness

Yasugi, M., Okuzaki, D., Kuwana, R., Takamatsu, H., Fujita, M., Sarker, M. R., & Miyake, M. (2016) · Applied and Environmental Microbiology · doi:10.1128/aem.00252-16 · Cited by 30 · see citing works

Post-translational lysine ac(et)ylation in health, ageing and disease

Blasl, A., Schulze, S., Qin, C., Graf, L. G., Vogt, R., & Lammers, M. (2021) · Biological Chemistry · doi:10.1515/hsz-2021-0139 · Cited by 29 · see citing works

Lysine Acetyltransferases and Their Role in AR Signaling and Prostate Cancer

Jaiswal, B., Agarwal, A., & Gupta, A. K. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.886594 · Cited by 29 · see citing works

Magnesium Suppresses Defects in the Formation of 70S Ribosomes as Well as in Sporulation Caused by Lack of Several Individual Ribosomal Proteins

Akanuma, G., Yamazaki, K., Yagishi, Y., Iizuka, Y., Ishizuka, M., Kawamura, F., & Kato-Yamada, Y. (2018) · Journal of Bacteriology · doi:10.1128/jb.00212-18 · Cited by 27 · see citing works

Sex hormones, sex chromosomes, and microbiota: identification of Akkermansia muciniphila as an estrogen-responsive bacterium

Sakamuri, A., Bardhan, P., Tummala, R., Mauvais‐Jarvis, F., Yang, T., Joe, B., & Ogola, B. O. (2023) · Microbiota and Host · doi:10.1530/mah-23-0010 · Cited by 27 · see citing works

Exploring the hidden potential of fosfomycin for the fight against severe Gram-negative infections

Saiprasad, P. V., & Krishnaprasad, K. (2016) · Indian Journal of Medical Microbiology · doi:10.4103/0255-0857.195379 · Cited by 24 · see citing works

The Putative Hydrolase YycJ (WalJ) Affects the Coordination of Cell Division with DNA Replication inBacillus subtilisand May Play a Conserved Role in Cell Wall Metabolism

Biller, S. J., Wayne, K. J., Winkler, M. E., et al. (2010) · Journal of Bacteriology · doi:10.1128/jb.00594-10 · Cited by 20 · see citing works

An Overlap between the Control of Programmed Cell Death in Bacillus anthracis and Sporulation

Chandramohan, L., Ahn, J., Weaver, K. E., & Bayles, K. W. (2009) · Journal of Bacteriology · doi:10.1128/jb.00314-09 · Cited by 20 · see citing works

Ribosomal Biogenesis and Heterogeneity in Development, Disease, and Aging

Islam, R. A., & Rallis, C. (2023) · Epigenomes · doi:10.3390/epigenomes7030017 · Cited by 16 · see citing works

Comamonas kerstersii Bacteremia of Unknown Origin

Rong, K., Delport, J., & AlMutawa, F. (2022) · Case Reports in Infectious Diseases · doi:10.1155/2022/1129832 · Cited by 14 · see citing works

Bacteremia caused by Comamonas kerstersii in a patient with acute perforated appendicitis and localized peritonitis: case report and literature review

Zhang, Y., Li, K., Zhan, Y., et al. (2023) · Frontiers in Medicine · doi:10.3389/fmed.2023.1283769 · Cited by 8 · see citing works

Fatty Acid Synthesis Knockdown Promotes Biofilm Wrinkling and Inhibits Sporulation in Bacillus subtilis

Arjes, H. A., Gui, H., Porter, R., et al. (2022) · mBio · doi:10.1128/mbio.01388-22 · Cited by 7 · see citing works

Genome-scale insights into the metabolic landscape and evolutionary development of Bifidobacterium bifidum

Selleri, E., Longhi, G., Tarracchini, C., Carolis, E. D., Petraro, S., Mancabelli, L., Milani, C., Turroni, F., Ventura, M., & Lugli, G. A. (2026) · Microbiome Research Reports · doi:10.20517/mrr.2026.19

Effects of Metformin on the Gut Microbiota in Obesity and Type 2 Diabetes Mellitus

Zhang, Q., & Hu, N. (2020) · Diabetes Metabolic Syndrome and Obesity · doi:10.2147/dmso.s286430 · Cited by 185 · see citing works

Study on the Genetic Diversity of Beauveria bassiana (Bals.) Vuill.in Yunnan

He, S. (2012) · Yunnan Nongye Daxue xuebao · Cited by 1 · see citing works

Role of Gut Microbiota on Weight Regulation

Nozari, N. (2018) · GOVARESH · Cited by 1 · see citing works

The altered gut microbiota of high-purine-induced hyperuricemia rats and its correlation with hyperuricemia

Liu, X., Lv, Q., Ren, H., Gao, L., Zhao, P., Yang, X., Yang, G., Xu, D., Wang, G., Yang, W. Q., et al. (2020) · PeerJ · doi:10.7717/peerj.8664 · Cited by 122 · see citing works

The gut microbiota and its relationship to diet and obesity

Clarke, S. F., Murphy, E. F., Nilaweera, K. N., Ross, R. P., Shanahan, F., O’Toole, P. W., & Cotter, P. D. (2012) · Gut Microbes · doi:10.4161/gmic.20168 · Cited by 458 · see citing works