Cited by 1,143Plant Molecular Biology ResearchDevelopmental Biology and Gene RegulationPlant Parasitism and Resistance

The DOI matches its Crossref record; 30 of the 31 references it cites were found in a registry or an index.

Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI Genes

Open access

Emery, John F., Floyd, Sandra K., Alvarez, John, Eshed, Yuval, Hawker, Nathaniel P., Izhaki, Anat, Baum, Stuart F., Bowman, John L.·2003·Current Biology

DOI 10.1016/j.cub.2003.09.035

Open this paper in CoChat — free account Open PDF

Abstract

Background Shoots of all land plants have a radial pattern that can be considered to have an adaxial (central)-abaxial (peripheral) polarity. In Arabidopsis, gain-of-function alleles of PHAVOLUTA and PHABULOSA, members of the class III HD-ZIP gene family, result in adaxialization of lateral organs. Conversely, loss-of-function alleles of the KANADI genes cause an adaxialization of lateral organs. Thus, the class III HD-ZIP and KANADI genes comprise a genetic system that patterns abaxial-adaxial polarity in lateral organs produced from the apical meristem. Results We show that gain-of-function alleles of REVOLUTA, another member of the class III HD-ZIP gene family, are characterized by adaxialized lateral organs and alterations in the radial patterning of vascular bundles in the stem. The gain-of-function phenotype can be obtained by changing only the REVOLUTA mRNA sequence and without changing the protein sequence; this finding indicates that this phenotype is likely mediated through an interference with microRNA binding. Loss of KANADI activity results in similar alterations in vascular patterning as compared to REVOLUTA gain-of-function alleles. Simultaneous loss-of-function of PHABULOSA, PHAVOLUTA, and REVOLUTA abaxializes cotyledons, abolishes the formation of the primary apical meristem, and in severe cases, eliminates bilateral symmetry; these phenotypes implicate these three genes in radial patterning of both embryonic and postembryonic growth. Conclusions Based on complementary vascular and leaf phenotypes of class III HD-ZIP and KANADI mutants, we propose that a common genetic program dependent upon miRNAs governs adaxial-abaxial patterning of leaves and radial patterning of stems in the angiosperm shoot. This finding implies that a common patterning mechanism is shared between apical and vascular meristems.

Integrity signals

Registry

Crossref · 10.1016/j.cub.2003.09.035

Cites

30 of 30 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Prediction of Plant MicroRNA Targets
Jones-Rhoades, M. W., Reinhart, B. J., Lim, L. P., Burge, C. B., Bartel, B., & Bartel, D. P. (2002) · Cell · doi:10.1016/s0092-8674(02)00863-2 · Cited by 2,263
MicroRNAs in plantsPreprint
Reinhart, B. J., Weinstein, E. G., Jones-Rhoades, M. W., Bartel, B., & Bartel, D. P. (2002) · Genes & Development · doi:10.1101/gad.1004402 · Cited by 2,052
Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNA
Llave, C., Xie, Z., Kasschau, K. D., & Carrington, J. C. (2002) · Science · doi:10.1126/science.1076311 · Cited by 1,627
Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.
Aida, M., Ishida, T., Fukaki, H., Fujisawa, H., & Tasaka, M. (1997) · The Plant Cell · doi:10.1105/tpc.9.6.841 · Cited by 1,486
Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots
McConnell, J. R., Emery, J. F., Eshed, Y., Bao, N., Bowman, J. L., & Barton, M. K. (2001) · Nature · doi:10.1038/35079635 · Cited by 1,104
Self-citation
A biochemical framework for RNA silencing in plantsPreprint
Tang, G., Reinhart, B. J., Bartel, D. P., & Zamore, P. D. (2003) · Genes & Development · doi:10.1101/gad.1048103 · Cited by 994
Members of the YABBY gene family specify abaxial cell fate in Arabidopsis
Siegfried, K. R., Eshed, Y., Baum, S. F., Otsuga, D., Drews, G. N., & Bowman, J. L. (1999) · Development · doi:10.1242/dev.126.18.4117 · Cited by 744
Self-citation
T-DNA as an Insertional Mutagen in Arabidopsis
Krysan, P. J., Young, J. C., & Sussman, M. R. (1999) · The Plant Cell · doi:10.1105/tpc.11.12.2283 · Cited by 722
Establishment of polarity in lateral organs of plants
Eshed, Y., Baum, S. F., Perea, J. V., & Bowman, J. L. (2001) · Current Biology · doi:10.1016/s0960-9822(01)00392-x · Cited by 635
Self-citation
KANADI regulates organ polarity in Arabidopsis
Kerstetter, R. A., Bollman, K. M., Taylor, R. A., Bomblies, K., & Poethig, R. S. (2001) · Nature · doi:10.1038/35079629 · Cited by 600

Show all 31 references

Research works printed but not linked: 1

Sussex, 1955, Morphogenesis in Solanum tuberosum L, Phytomorphology, 5, 286

Sorted by citations

Untitled work
Bartel (2004) · doi:10.1016/s0092-8674(04)00045-5 · Cited by 34,714
MicroRNAs: small RNAs with a big role in gene regulation
He, L., & Hannon, G. J. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1379 · Cited by 7,118
Prediction of Mammalian MicroRNA Targets
Lewis, B. P., Shih, I.-H., Jones-Rhoades, M. W., Bartel, D. P., & Burge, C. B. (2003) · Cell · doi:10.1016/s0092-8674(03)01018-3 · Cited by 5,199
The Microprocessor complex mediates the genesis of microRNAs
Gregory, R. I., Yan, K.-P., Amuthan, G., Chendrimada, T. P., Doratotaj, B., Cooch, N. S., & Shiekhattar, R. (2004) · Nature · doi:10.1038/nature03120 · Cited by 2,852
MicroRNAs AND THEIR REGULATORY ROLES IN PLANTS
Jones-Rhoades, M. W., Bartel, D. P., & Bartel, B. (2006) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.57.032905.105218 · Cited by 2,720
RNA silencing in plants
Baulcombe, D. C. (2004) · Nature · doi:10.1038/nature02874 · Cited by 2,556
Computational Identification of Plant MicroRNAs and Their Targets, Including a Stress-Induced miRNA
Jones-Rhoades, M. W., & Bartel, D. P. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.05.027 · Cited by 2,257
microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
Allen, E. M., Xie, Z., Gustafson, A. M., & Carrington, J. C. (2005) · Cell · doi:10.1016/j.cell.2005.04.004 · Cited by 2,249
Genetic and Functional Diversification of Small RNA Pathways in Plants
Xie, Z., Johansen, L. K., Gustafson, A. M., Kasschau, K. D., Lellis, A. D., Zilberman, D., Jacobsen, S. E., & Carrington, J. C. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020104 · Cited by 1,569
Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs
Bartel, D. P., & Chen, C. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1328 · Cited by 1,439
Patterns of Auxin Transport and Gene Expression during Primordium Development Revealed by Live Imaging of the Arabidopsis Inflorescence Meristem
Heisler, M. G., Ohno, C., Das, P., Sieber, P., Reddy, G. V., Long, J. A., & Meyerowitz, E. M. (2005) · Current Biology · doi:10.1016/j.cub.2005.09.052 · Cited by 1,189
Transcription switches for protoxylem and metaxylem vessel formationPreprint
Kubo, M., Udagawa, M., Nishikubo, N., Horiguchi, G., Yamaguchi, M., Ito, J., Mimura, T., Fukuda, H., & Demura, T. (2005) · Genes & Development · doi:10.1101/gad.1331305 · Cited by 1,166
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
Khraiwesh, B., Zhu, J., & Zhu, J. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.05.001 · Cited by 1,053
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant developmentPreprint
Vaucheret, H., Vazquez, F., Crété, P., & Bartel, D. P. (2004) · Genes & Development · doi:10.1101/gad.1201404 · Cited by 982
Small RNAs and Their Roles in Plant Development
Chen, X. (2009) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.042308.113417 · Cited by 953
MicroRNA-Directed Regulation of Arabidopsis AUXIN RESPONSE FACTOR17 Is Essential for Proper Development and Modulates Expression of Early Auxin Response Genes
Mallory, A. C., Bartel, D. P., & Bartel, B. (2005) · The Plant Cell · doi:10.1105/tpc.105.031716 · Cited by 921
Cell Signalling by MicroRNA165/6 Directs Gene Dose-Dependent Root Cell Fate
Carlsbecker, A., Lee, J.-Y., Roberts, C. J., Dettmer, J., Lehesranta, S., Zhou, J., Lindgren, O., Moreno-Risueno, M. A., Vatén, A., Thitamadee, S., et al. (2010) · Nature · doi:10.1038/nature08977 · Cited by 861
Self-citation
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
Reyes, J. L., & Chua, N. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02980.x · Cited by 825
NAC Transcription Factors, NST1 and NST3, Are Key Regulators of the Formation of Secondary Walls in Woody Tissues of Arabidopsis
Mitsuda, N., Iwase, A., Yamamoto, H., Yoshida, M., Seki, M., Shinozaki, K., & Ohme‐Takagi, M. (2007) · The Plant Cell · doi:10.1105/tpc.106.047043 · Cited by 823
Modulation of floral development by a gibberellin-regulated microRNA
Achard, P., Herr, A. J., Baulcombe, D. C., & Harberd, N. P. (2004) · Development · doi:10.1242/dev.01206 · Cited by 822
Functions of microRNAs and related small RNAs in plants
Mallory, A. C., & Vaucheret, H. (2006) · Nature Genetics · doi:10.1038/ng1791 · Cited by 828
Endogenous trans-Acting siRNAs Regulate the Accumulation of Arabidopsis mRNAs
Vazquez, F., Vaucheret, H., Rajagopalan, R. M., Lepers-Blassiau, C., Gasciolli, V., Mallory, A. C., Hilbert, J., Bartel, D. P., & Crété, P. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.09.028 · Cited by 797
Biological principles of microRNA-mediated regulation: shared themes amid diversity
Flynt, A. S., & Lai, E. C. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2455 · Cited by 793
Class III Homeodomain-Leucine Zipper Gene Family Members Have Overlapping, Antagonistic, and Distinct Roles in Arabidopsis Development
Prigge, M. J., Otsuga, D., Alonso, J. M., Ecker, J. R., Drews, G. N., & Clark, S. E. (2004) · The Plant Cell · doi:10.1105/tpc.104.026161 · Cited by 777
The Plant Vascular System: Evolution, Development and Functions F
Lucas, W. J., Groover, A. T., Lichtenberger, R., Furuta, K. M., Yadav, S. R., Helariutta, Y., He, X., Fukuda, H., Kang, J., Brady, S. M., et al. (2013) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12041 · Cited by 790
Arabidopsis microRNA167controls patterns ofARF6andARF8expression, and regulates both female and male reproduction
Wu, M., Tian, Q., & Reed, J. W. (2006) · Development · doi:10.1242/dev.02602 · Cited by 776
Post-transcriptional small RNA pathways in plants: mechanisms and regulationsPreprint
Vaucheret, H. (2006) · Genes & Development · doi:10.1101/gad.1410506 · Cited by 774
Expression of Arabidopsis MIRNA Genes
Xie, Z., Allen, E. M., Fahlgren, N., Calamar, A., Givan, S. A., & Carrington, J. C. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.062943 · Cited by 707
Plant microRNA: A small regulatory molecule with big impact
Zhang, B., Pan, X., Cobb, G. P., & Anderson, T. A. (2005) · Developmental Biology · doi:10.1016/j.ydbio.2005.10.036 · Cited by 713
microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
Juarez, M. T., Kui, J. S., Thomas, J., Heller, B. A., & Timmermans, M. C. P. (2004) · Nature · doi:10.1038/nature02363 · Cited by 704
MicroRNA Regulation of NAC-Domain Targets Is Required for Proper Formation and Separation of Adjacent Embryonic, Vegetative, and Floral Organs
Mallory, A. C., Dugas, D. V., Bartel, D. P., & Bartel, B. (2004) · Current Biology · doi:10.1016/j.cub.2004.06.022 · Cited by 697
The true story of the HD-Zip family
Ariel, F., Manavella, P. A., Dezar, C. A., & Chan, R. L. (2007) · Trends in Plant Science · doi:10.1016/j.tplants.2007.08.003 · Cited by 689
The Arabidopsis GAMYB-Like Genes, MYB33 and MYB65 , Are MicroRNA-Regulated Genes That Redundantly Facilitate Anther Development
Millar, A. A., & Gubler, F. (2005) · The Plant Cell · doi:10.1105/tpc.104.027920 · Cited by 688
MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5′ region
Mallory, A. C., Reinhart, B. J., Jones-Rhoades, M. W., Tang, G., Zamore, P. D., Barton, M. K., & Bartel, D. P. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600340 · Cited by 681
Gene silencing in plants using artificial microRNAs and other small RNAs
Ossowski, S., Schwab, R., & Weigel, D. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03328.x · Cited by 708
Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing
Meister, G., Landthaler, M., Dorsett, Y., & Tuschl, T. (2004) · RNA · doi:10.1261/rna.5235104 · Cited by 626
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
Allen, E., Xie, Z., Gustafson, A. M., Sung, G.-H., Spatafora, J. W., & Carrington, J. C. (2004) · Nature Genetics · doi:10.1038/ng1478 · Cited by 520
Novel and Mechanical Stress–Responsive MicroRNAs in Populus trichocarpa That Are Absent from Arabidopsis
Lu, S., Sun, Y., Shi, R., Clark, C. M., Li, L., & Chiang, V. L. (2005) · The Plant Cell · doi:10.1105/tpc.105.033456 · Cited by 604
Antiquity of MicroRNAs and Their Targets in Land Plants
Axtell, M. J., & Bartel, D. P. (2005) · The Plant Cell · doi:10.1105/tpc.105.032185 · Cited by 596
BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis
Caño‐Delgado, A. I., Yin, Y., Yu, C., Vafeados, D. K., Mora‐García, S., Cheng, J.-C., Nam, K. H., Li, J., & Chory, J. (2004) · Development · doi:10.1242/dev.01403 · Cited by 581
microRNA biogenesis and function in plants
Chen, X. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.07.071 · Cited by 571
MicroRNAs and their regulatory roles in animals and plants
Zhang, B., Wang, Q., & Pan, X. (2006) · Journal of Cellular Physiology · doi:10.1002/jcp.20869 · Cited by 555
Auxin Response Factors Mediate Arabidopsis Organ Asymmetry via Modulation of KANADI Activity
Pekker, I., Alvarez, J. P., & Eshed, Y. (2005) · The Plant Cell · doi:10.1105/tpc.105.034876 · Cited by 557
Self-citation
MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
Laufs, P., Peaucelle, A., Morin, H., & Traas, J. (2004) · Development · doi:10.1242/dev.01320 · Cited by 543
In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning
Greco, M., Chiappetta, A. A. C., Bruno, L., & Bitonti, M. B. (2011) · Journal of Experimental Botany · doi:10.1093/jxb/err313 · Cited by 555
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
Kidner, C. A., & Martienssen, R. A. (2004) · Nature · doi:10.1038/nature02366 · Cited by 518
MicroRNAs Inhibit the Translation of Target mRNAs on the Endoplasmic Reticulum in Arabidopsis
Li, S., Liu, L., Zhuang, X., Yu, Y., Liu, X., Cui, X., Ji, L., Pan, Z., Cao, X., Mo, B., et al. (2013) · Cell · doi:10.1016/j.cell.2013.04.005 · Cited by 519
Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing
Pant, B. D., Musialak‐Lange, M., Nuc, P., May, P., Buhtz, A., Kehr, J., Walther, D., & Scheible, W. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.139139 · Cited by 497
Callose Biosynthesis Regulates Symplastic Trafficking during Root Development
Vatén, A., Dettmer, J., Wu, S., Stierhof, Y., Miyashima, S., Yadav, S. R., Roberts, C., Campilho, A., Bulone, V., Lichtenberger, R., et al. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.10.006 · Cited by 485
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
Bonnet, É., Wuyts, J., Rouzé, P., & de Peer, Y. V. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0404025101 · Cited by 456
Regulation ofArabidopsisshoot apical meristem and lateral organ formation by microRNAmiR166gand itsAtHD-ZIPtarget genes
Williams, L. E., Grigg, S. P., Xie, M., Christensen, S. K., & Fletcher, J. C. (2005) · Development · doi:10.1242/dev.01942 · Cited by 446
Effective Small RNA Destruction by the Expression of a Short Tandem Target Mimic in Arabidopsis
Yan, J., Gu, Y., Jia, X., Kang, W., Pan, S., Tang, X., Chen, X., & Tang, G. (2012) · The Plant Cell · doi:10.1105/tpc.111.094144 · Cited by 437
A Mutually Inhibitory Interaction between Auxin and Cytokinin Specifies Vascular Pattern in Roots
Bishopp, A., Help, H., El‐Showk, S., Weijers, D., Scheres, B., Friml, J., Benková, E., Mähönen, A. P., & Helariutta, Y. (2011) · Current Biology · doi:10.1016/j.cub.2011.04.017 · Cited by 436
PXY, a Receptor-like Kinase Essential for Maintaining Polarity during Plant Vascular-Tissue Development
Fisher, K., & Turner, S. R. (2007) · Current Biology · doi:10.1016/j.cub.2007.05.049 · Cited by 419
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
Trindade, I., Capitão, C., Dalmay, T., Fevereiro, P. S., & dos Santos, D. M. M. F. (2009) · Planta · doi:10.1007/s00425-009-1078-0 · Cited by 413
Ancient microRNA target sequences in plants
Floyd, S. K., & Bowman, J. L. (2004) · Nature · doi:10.1038/428485a · Cited by 403
Self-citation
Endogenous and Synthetic MicroRNAs Stimulate Simultaneous, Efficient, and Localized Regulation of Multiple Targets in Diverse Species
Alvarez, J. P., Pekker, I., Goldshmidt, A., Blum, E., Amsellem, Z., & Eshed, Y. (2006) · The Plant Cell · doi:10.1105/tpc.105.040725 · Cited by 402
Self-citation
MicroRNA Binding Sites in Arabidopsis Class III HD-ZIP mRNAs Are Required for Methylation of the Template Chromosome
Bao, N., Lye, K.-W., & Barton, M. K. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.10.003 · Cited by 401
Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities
Eshed, Y., Izhaki, A., Baum, S. F., Floyd, S. K., & Bowman, J. L. (2004) · Development · doi:10.1242/dev.01186 · Cited by 399
Self-citation
The developmental role of microRNA in plants
Kidner, C. A., & Martienssen, R. A. (2004) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2004.11.008 · Cited by 396
Transcriptome-wide identification of microRNA targets in rice
Li, Y., Zheng, Y., Addo‐Quaye, C., Zhang, L., Saini, A., Jagadeeswaran, G., Axtell, M. J., Zhang, W., & Sunkar, R. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04187.x · Cited by 400
Signals that control plant vascular cell differentiation
Fukuda, H. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1364 · Cited by 392
Arabidopsis CUP-SHAPED COTYLEDON3 Regulates Postembryonic Shoot Meristem and Organ Boundary Formation
Hibara, K.-I., Karim, M. R., Takada, S., Taoka, K.-I., Furutani, M., Aida, M., & Tasaka, M. (2006) · The Plant Cell · doi:10.1105/tpc.106.045716 · Cited by 387
AtXRN4 Degrades mRNA in Arabidopsis and Its Substrates Include Selected miRNA Targets
Souret, F. F., Kastenmayer, J. P., & Green, P. J. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.06.006 · Cited by 385
microRNA‐directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems
Kim, J., Jung, J., Reyes, J. L., Kim, Y., Kim, S., Chung, K., Kim, J. A., Lee, M., Lee, Y., Kim, V. N., et al. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02354.x · Cited by 384
Specification of Leaf Polarity in Arabidopsis via the trans-Acting siRNA Pathway
Garcia, D., Collier, S. A., Byrne, M. E., & Martienssen, R. A. (2006) · Current Biology · doi:10.1016/j.cub.2006.03.064 · Cited by 378
Twenty years on: The inner workings of the shoot apical meristem, a developmental dynamo
Barton, M. K. (2010) · Developmental Biology · doi:10.1016/j.ydbio.2009.11.029 · Cited by 372
The early extra petals1 Mutant Uncovers a Role for MicroRNA miR164c in Regulating Petal Number in Arabidopsis
Baker, C. C., Sieber, P., Wellmer, F., & Meyerowitz, E. M. (2005) · Current Biology · doi:10.1016/j.cub.2005.02.017 · Cited by 367
MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesisPreprint
Nodine, M. D., & Bartel, D. P. (2010) · Genes & Development · doi:10.1101/gad.1986710 · Cited by 360
Homeodomain Leucine Zipper Class I Genes in Arabidopsis. Expression Patterns and Phylogenetic Relationships
Henriksson, E., Olsson, A. S. B., Johannesson, H., Johansson, H., Hanson, J., Engström, P., & Söderman, E. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.063461 · Cited by 366
AGO1 Homeostasis Entails Coexpression of MIR168 and AGO1 and Preferential Stabilization of miR168 by AGO1
Vaucheret, H., Mallory, A. C., & Bartel, D. P. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.03.011 · Cited by 356
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration
Zhang, T., Lian, H., Zhou, C., Xu, L., Jiao, Y., & Wang, J. (2017) · The Plant Cell · doi:10.1105/tpc.16.00863 · Cited by 361
Stem-cell niches: nursery rhymes across kingdoms
Scheres, B. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2164 · Cited by 365
Computational prediction of miRNAs in Arabidopsis thalianaPreprint
Adai, A. T., Johnson, C. S., Mlotshwa, S., Archer-Evans, S., Manocha, V., Vance, V. B., & Sundaresan, V. (2005) · Genome Research · doi:10.1101/gr.2908205 · Cited by 357
Plant Stem Cell Niches
Aichinger, E., Kornet, N., Friedrich, T., & Laux, T. (2012) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042811-105555 · Cited by 350
Evolution of Arabidopsis microRNA families through duplication eventsPreprint
Maher, C. A., Stein, L. D., & Ware, D. (2006) · Genome Research · doi:10.1101/gr.4680506 · Cited by 334
MicroRNA networks and developmental plasticity in plants
Rubio‐Somoza, I., & Weigel, D. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.03.001 · Cited by 331
High levels of auxin signalling define the stem-cell organizer of the vascular cambium
Smetana, O., Mäkilä, R., Lyu, M., Amiryousefi, A., Rodríguez, F. S., Wu, M., Solé-Gil, A., Gavarrón, M. L., Riccardo, S., Miyashima, S., et al. (2019) · Nature · doi:10.1038/s41586-018-0837-0 · Cited by 321
Flower Development
Alvarez-Buylla, E. R., Benítez, M., Corvera-Poiré, A., Chaos, Á., de Folter, S., Buen, A. G.-D., Garay‐Arroyo, A., García‐Ponce, B., Jaimes‐Miranda, F., Pérez-Ruíz, R. V., et al. (2010) · The Arabidopsis Book · doi:10.1199/tab.0127 · Cited by 330
Leaf shape: genetic controls and environmental factors
Tsukaya, H. (2005) · The International Journal of Developmental Biology · doi:10.1387/ijdb.041921ht · Cited by 311
MicroRNA166 controls root and nodule development in Medicago truncatula
Boualem, A., Laporte, P., Jovanovic, M., Laffont, C., Plet, J., Combier, J., Niebel, A., Crespi, M. D., & Frugier, F. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03448.x · Cited by 310
Differentiating Arabidopsis Shoots from Leaves by Combined YABBY Activities
Sarojam, R., Sappl, P. G., Goldshmidt, A., Efroni, I., Floyd, S. K., Eshed, Y., & Bowman, J. L. (2010) · The Plant Cell · doi:10.1105/tpc.110.075853 · Cited by 311
Self-citation
Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation
Ehlting, J., Mattheus, N., Aeschliman, D. S., Li, E., Hamberger, B., Cullis, I. F., Zhuang, J., Kaneda, M., Mansfield, S. D., Samuels, L., et al. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02403.x · Cited by 298
Stem cell function during plant vascular development
Miyashima, S., Sebastián, J., Lee, J., & Helariutta, Y. (2012) · The EMBO Journal · doi:10.1038/emboj.2012.301 · Cited by 295
Evolution of development of vascular cambia and secondary growth
Spicer, R., & Groover, A. T. (2010) · New Phytologist · doi:10.1111/j.1469-8137.2010.03236.x · Cited by 295
A role for the ribosome in development
Byrne, M. E. (2009) · Trends in Plant Science · doi:10.1016/j.tplants.2009.06.009 · Cited by 299
Knockdown of Rice MicroRNA166 Confers Drought Resistance by Causing Leaf Rolling and Altering Stem Xylem Development
Zhang, J., Zhang, H., Srivastava, A. K., Pan, Y., Bai, J., Fang, J., Shi, H., & Zhu, J. (2018) · PLANT PHYSIOLOGY · doi:10.1104/pp.17.01432 · Cited by 293
The Ancestral Developmental Tool Kit of Land Plants
Floyd, S. K., & Bowman, J. L. (2006) · International Journal of Plant Sciences · doi:10.1086/509079 · Cited by 292
Self-citation
Molecular Mechanisms of Leaf Morphogenesis
Du, F., Guan, C., & Jiao, Y. (2018) · Molecular Plant · doi:10.1016/j.molp.2018.06.006 · Cited by 283
Morphogenesis of Simple and Compound Leaves: A Critical Review
Efroni, I., Eshed, Y., & Lifschitz, E. (2010) · The Plant Cell · doi:10.1105/tpc.109.073601 · Cited by 283
Self-citation
Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root
Miyashima, S., Koi, S., Hashimoto, T., & Nakajima, K. (2011) · Development · doi:10.1242/dev.060491 · Cited by 276
Leaf development: a cellular perspective
Kalve, S., Vos, D. E. D., & Beemster, G. T. S. (2014) · Frontiers in Plant Science · doi:10.3389/fpls.2014.00362 · Cited by 285
Computational identification of novel microRNAs and targets in Brassica napus
Xie, F. L., Huang, S. Q., Guo, K., Xiang, A. L., Zhu, Y., Nie, L., & Yang, Z. M. (2007) · FEBS Letters · doi:10.1016/j.febslet.2007.02.074 · Cited by 274
Plant vascular development: from early specification to differentiation
Rybel, B. D., Mähönen, A. P., Helariutta, Y., & Weijers, D. (2015) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2015.6 · Cited by 277
Two small regulatory RNAs establish opposing fates of a developmental axisPreprint
Nogueira, F. T. S., Madi, S., Chitwood, D. H., Juarez, M. T., & Timmermans, M. C. P. (2007) · Genes & Development · doi:10.1101/gad.1528607 · Cited by 273
RDR6 Has a Broad-Spectrum but Temperature-Dependent Antiviral Defense Role in Nicotiana benthamiana
Qu, F., Ye, X., Hou, G., Sato, S. J., Clemente, T. E., & Morris, T. J. (2005) · Journal of Virology · doi:10.1128/jvi.79.24.15209-15217.2005 · Cited by 268
βC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responsesPreprint
Yang, J., Iwasaki, M., Machida, C., Machida, Y., Zhou, X., & Chua, N. (2008) · Genes & Development · doi:10.1101/gad.1682208 · Cited by 264
Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits
Je, B. I., Gruel, J., Lee, Y. K., Bommert, P., Demesa-Arévalo, E., Eveland, A. L., Wu, Q., Goldshmidt, A., Meeley, R. B., Bartlett, M. E., et al. (2016) · Nature Genetics · doi:10.1038/ng.3567 · Cited by 262
The Xylem and Phloem Transcriptomes from Secondary Tissues of the Arabidopsis Root-Hypocotyl
Zhao, C., Craig, J. C., Petzold, H. E., Dickerman, A. W., & Beers, E. P. (2005) · Plant Physiology · doi:10.1104/pp.105.060202 · Cited by 262
Specification of adaxial cell fate during maize leaf development
Juarez, M. T., Twigg, R. W., & Timmermans, M. C. P. (2004) · Development · doi:10.1242/dev.01328 · Cited by 258

Authors: Emery, J. F., Floyd, S. K., Alvarez, J., Eshed, Y., Hawker, N. P., Izhaki, A., Baum, S. F., & Bowman, J. L.
Affiliations: University of California, Davis (US)
Corresponding author: Bowman, John L.
ORCID: Alvarez, John
Eshed, Yuval
Hawker, Nathaniel P.
Bowman, John L.
Venue: Current Biology
Publisher: Elsevier BV
Published: 2003-10
Volume: 13
Issue: 20
Pages: 1768-1774
ISSN: 0960-9822 (ISSN-L)
DOI: 10.1016/j.cub.2003.09.035
OpenAlex: W2002212941
Cited by: 1,143
References: 31
Citations by year: 2026: 23 · 2025: 24 · 2024: 33 · 2023: 30 · 2022: 62 · 2021: 38 · 2020: 54 · 2019: 42 · 2018: 42 · 2017: 59 · 2016: 38 · 2015: 56 · 2014: 46 · 2013: 59 · 2012: 63
FWCI: 79.29
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: www.elsevier.com/tdm/userlicense/1.0/ (tdm)
www.elsevier.com/legal/tdmrep-license (tdm)
www.elsevier.com/open-access/userlicense/1.0/ (vor, 3577 d)
doi.org/10.15223/policy-017 (stm-asf)
doi.org/10.15223/policy-037 (stm-asf)
doi.org/10.15223/policy-012 (stm-asf)
doi.org/10.15223/policy-029 (stm-asf)
doi.org/10.15223/policy-004 (stm-asf)
Locations: Current Biology (publishedVersion)
PubMed (publishedVersion)
Funders: National Science Foundation (00 77984, 99 86054)
Topics: Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Parasitism and Resistance
Keywords: radial patterning, adaxial-abaxial polarity, REVOLUTA, microRNA binding, vascular patterning, cotyledon development, apical meristem, bilateral symmetry, shoot development, Arabidopsis thaliana
MeSH terms: Base Sequence, Models, Molecular, Molecular Sequence Data, Phylogeny, Transcription Factors, Arabidopsis, Plant Shoots, Body Patterning, Gene Expression Profiling, Arabidopsis Proteins, MicroRNAs

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI Genes

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks