Function of alternative splicing

AUGUSTUS: ab initio prediction of alternative transcripts

Stanke, M., Keller, O., Gunduz, I., Hayes, A., Waack, S., & Morgenstern, B. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl200 · Cited by 2,829

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

Christofk, H. R., Vander Heiden, M. G., Harris, M. H., Ramanathan, A., Gerszten, R. E., Wei, R., Fleming, M. D., Schreiber, S. L., & Cantley, L. C. (2008) · Nature · doi:10.1038/nature06734 · Cited by 2,820

The Spliceosome: Design Principles of a Dynamic RNP Machine

Wahl, M. C., Will, C. L., & Lührmann, R. (2009) · Cell · doi:10.1016/j.cell.2009.02.009 · Cited by 2,665

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

Tripathi, V., Ellis, J. D., Shen, Z., Song, D. Y., Pan, Q., Watt, A. T., Freier, S. M., Bennett, C. F., Sharma, A., Bubulya, P. A., et al. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.08.011 · Cited by 2,291

Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

Berget, S. M., Moore, C. L., & Sharp, P. A. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.8.3171 · Cited by 1,483

Function of alternative splicing

Stamm, S., Ben‐Ari, S., Rafalska, I., Tang, Y., Zhang, Z., Toiber, D., Thanaraj, T. A., & Soreq, H. (2004) · Gene · doi:10.1016/j.gene.2004.10.022 · Cited by 1,398

The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing

Makeyev, E. V., Zhang, J., Carrasco, M. A., & Maniatis, T. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.07.015 · Cited by 1,395

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

Licatalosi, D. D., Mele, A., Fak, J. J., Ule, J., Kayikci, M., Chi, S. W., Clark, T. A., Schweitzer, A. C., Blume, J. E., Wang, X., et al. (2008) · Nature · doi:10.1038/nature07488 · Cited by 1,352

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

Stanke, M., Schöffmann, O., Morgenstern, B., & Waack, S. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-62 · Cited by 1,304

Understanding alternative splicing: towards a cellular code

Matlin, A. J., Clark, F., & Smith, C. W. J. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1645 · Cited by 1,299

RNA structure probing to characterize RNA–protein interactions on low abundance pre-mRNA in living cells

Bubenik, J. L., Hale, M. A., McConnell, O. L., Wang, E. T., Swanson, M. S., Spitale, R. C., & Berglund, J. A. (2020) · RNA · doi:10.1261/rna.077263.120 · Cited by 14

Identification and Characterization of a New Splicing Variant of Prokineticin 2

Lattanzi, R., Maftei, D., Vincenzi, M., Fullone, M. R., & Miele, R. (2022) · Life · doi:10.3390/life12020248 · Cited by 14

Integrated transcriptome and proteome analysis provides new insights into camptothecin biosynthesis and regulation in Camptotheca acuminata

Zhang, H., Shen, X., Sun, S., Li, Y., Wang, S., Wei, J., Guo, B., & Sun, C. (2023) · Physiologia Plantarum · doi:10.1111/ppl.13916 · Cited by 14

New Insights Into the Role of RNA-Binding Proteins in the Regulation of Heart Development

Ladd, A. N. (2016) · International review of cytology · doi:10.1016/bs.ircmb.2015.12.009 · Cited by 14

A bioinformatic analysis identifies circadian expression of splicing factors and time-dependent alternative splicing events in the HD-MY-Z cell line

Генов, Н., Basti, A., Abreu, M., Astaburuaga-García, R., & Relógio, A. (2019) · Scientific Reports · doi:10.1038/s41598-019-47343-w · Cited by 14

Aging Atlas Reveals Cell-Type-Specific Regulation of Pro-longevity StrategiesPreprint

Gao, S. M., Qi, Y., Zhang, Q., Mohammed, A. S., Lee, Y.-T., Guan, Y., Li, H., Fu, Y., & Wang, M. C. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.02.28.530490 · Cited by 14

Alterations in the expression and activity of pre-mRNA splicing factors in hepatocarcinogenesis

Berasain, C., Elizalde, M., Urtasun, R., Castillo, J., García‐Irigoyen, O., Uriarte, I., Latasa, M. U., Prìeto, J., & Avila, M. A. (2014) · Hepatic Oncology · doi:10.2217/hep.13.17 · Cited by 13

Computational Analysis of Alternative Splicing Using VAST-TOOLS and the VastDB Framework

Gohr, A., Mantica, F., Hermoso, A., Tapial, J., Márquez, Y., & Irimia, M. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2521-7_7 · Cited by 13

Identification of tumor antigens and immune subtypes in head and neck squamous cell carcinoma for mRNA vaccine development

Chen, Y., Jiang, N., Chen, M., Sui, B., & Liu, X. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2022.1064754 · Cited by 13

Evidence for splice transcript variants of TMEM165, a gene involved in CDG

Krzewinski‐Recchi, M., Potelle, S., Mir, A., Vicogne, D., Dulary, E., Duvet, S., Morelle, W., de Bettignies, G., & Foulquier, F. (2017) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2017.01.011 · Cited by 13

Multi-step splicing of sphingomyelin synthase linear and circular RNAs

Filippenkov, I. B., Sudarkina, O. Y., Limborska, S. A., & Dergunova, L. V. (2018) · Gene · doi:10.1016/j.gene.2018.02.030 · Cited by 13

Transcripts’ Evolutionary History and Structural Dynamics Give Mechanistic Insights into the Functional Diversity of the JNK Family

Ait-Hamlat, A., Zea, D. J., Labeeuw, A., Polit, L., Richard, H., & Laine, É. (2020) · Journal of Molecular Biology · doi:10.1016/j.jmb.2020.01.032 · Cited by 14

Structural studies of the endogenous spliceosome – The supraspliceosome

Sperling, J. M., & Sperling, R. (2017) · Methods · doi:10.1016/j.ymeth.2017.04.005 · Cited by 13

Changes in Alternative Splicing as Pharmacodynamic Markers for Sudemycin D6

Thurman, M., van Doorn, J., Danzer, B., Webb, T. R., & Stamm, S. (2017) · Biomarker Insights · doi:10.1177/1177271917730557 · Cited by 13

Alternative splicing in serotonergic system: Implications in neuropsychiatric disorders

Latorre, E., Mesonero, J. E., & Harries, L. W. (2019) · Journal of Psychopharmacology · doi:10.1177/0269881119856546 · Cited by 13

Global alternative splicing landscape of skeletal muscle atrophy induced by hindlimb unloading

Sun, J., Yang, H., Yang, X., Chen, X., Xu, H. Z., Shen, Y., Ding, F., Gu, X., Zhu, J., & Sun, H. (2021) · Annals of Translational Medicine · doi:10.21037/atm-20-5388 · Cited by 13

Tissue-Specific Alternative Splicing Analysis Reveals the Diversity of Chromosome 18 Transcriptome

Shargunov, A., Krasnov, G. S., Ponomarenko, E. A., Lisitsa, A., Shurdov, M. A., Зверев, В. В., Archakov, A. I., & Blinov, V. M. (2013) · Journal of Proteome Research · doi:10.1021/pr400808u · Cited by 12

Molecular identification of the dominant-negative, splicing isoform of the two-pore domain K+ channel K2P5.1 in lymphoid cells and enhancement of its expression by splicing inhibition

Endo, K., Kurokawa, N., Kito, H., Nakakura, S., Fujii, M., & Ohya, S. (2015) · Biochemical Pharmacology · doi:10.1016/j.bcp.2015.10.002 · Cited by 12

Assisted transcriptome reconstruction and splicing orthology

Blanquart, S., Varré, J., Guertin, P., Perrin, A., Bergeron, A., & Swenson, K. M. (2016) · BMC Genomics · doi:10.1186/s12864-016-3103-6 · Cited by 12

Molecular cloning of novel transcripts of the adaptor-related protein complex 2 alpha 1 subunit (AP2A1) gene, using Next-Generation Sequencing

Adamopoulos, P. G., Kontos, C. K., Diamantopoulos, M. A., & Scorilas, A. (2018) · Gene · doi:10.1016/j.gene.2018.08.008 · Cited by 12

Alternative Splicing: A New Therapeutic Target for Ovarian Cancer

Yao, S., Yuan, C., Shi, Y., Qi, Y., Sridha, R., Dai, M., & Cai, H. (2022) · Technology in Cancer Research & Treatment · doi:10.1177/15330338211067911 · Cited by 12

RNA-Binding Proteins and Alternative Splicing Genes Are Coregulated in Human Retinal Endothelial Cells Treated with High Glucose

Zhao, H., Kong, H., Wang, B., Wu, S., Chen, T., & Cui, Y. T. (2022) · Journal of Diabetes Research · doi:10.1155/2022/7680513 · Cited by 13

A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals

Liu, J., Lang, K., Tan, S., Jie, W., Zhu, Y., Huang, S., & Huang, W. (2022) · BMC Genomics · doi:10.1186/s12864-022-08881-2 · Cited by 12

Molecular cloning, sequence analysis and tissue-specific expression of Akirin2 gene in Tianfu goat

Ma, J., Xu, G., Wan, L., & Wang, N. (2014) · Gene · doi:10.1016/j.gene.2014.09.030 · Cited by 12

Effects of the long and short isoforms of TIPE3 on the growth and metastasis of gastric cancer

Gao, J.-F., Zhang, H., Lv, J., Fan, Y.-Y., Feng, D., & Song, L. (2020) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2020.109853 · Cited by 12

A multi-factor trafficking site on the spliceosome remodeling enzyme BRR2 recruits C9ORF78 to regulate alternative splicing

Bergfort, A., Preußner, M., Kuropka, B., Ilik, İ., Hilal, T., Weber, G., Freund, C., Aktaş, T., Heyd, F., & Wahl, M. C. (2022) · Nature Communications · doi:10.1038/s41467-022-28754-2 · Cited by 13

Unveiling alterative splice diversity from human oligodendrocyte proteome data

Tavares, R., Wajnberg, G., Scherer, N. D. M., Pauletti, B. A., Cassoli, J. S., Ferreira, C. G., Leme, A. F. P., de Araujo‐Souza, P. S., Martins‐de‐Souza, D., & Passetti, F. (2016) · Journal of Proteomics · doi:10.1016/j.jprot.2016.05.023 · Cited by 13

ulfasQTL: an ultra-fast method of composite splicing QTL analysis

Yang, Q., Hu, Y., Li, J., & Zhang, X. (2017) · BMC Genomics · doi:10.1186/s12864-016-3258-1 · Cited by 11

Characterization of expression and alternative splicing of the gene cadherin-like and PC esterase domain containing 1 (Cped1)

Maynard, R. D., Godfrey, D. A., Medina‐Gómez, C., & Ackert‐Bicknell, C. L. (2018) · Gene · doi:10.1016/j.gene.2018.06.060 · Cited by 13

Diosgenin biosynthesis investigation in medicinal herb (Tribulus terrestris) by transcriptome analysis

Tyagi, P., Prasad, M., Mathur, S., & Ranjan, R. (2023) · Gene · doi:10.1016/j.gene.2023.147937 · Cited by 11

The golden genome annotation of Ganoderma lingzhi reveals a more complex scenario of eukaryotic gene structure and transcription activity

Wang, L., Shi, P., Ping, Z., Huang, Q., Jiang, L., Ma, N., Wang, Q., Xu, J., Zou, Y., & Huang, Z. (2024) · BMC Biology · doi:10.1186/s12915-024-02073-y · Cited by 11

Characterization of Tumor Antigens from Multi-omics Data: Computational Approaches and Resources

Wang, Y., Wengler, J., Fang, Y., Zhou, J., Ruan, H., Zhang, Z., & Han, L. (2025) · Genomics Proteomics & Bioinformatics · doi:10.1093/gpbjnl/qzaf001 · Cited by 12

Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox

Schertzer, M. D., Stirn, A., Isaev, K., Pereira, L., Park, S. H., Das, A., Réal, A., Jeffery, E. D., Harbison, C., Wessels, H., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-62066-5 · Cited by 11

Characterization of an IL-12 p40/p35 Truncated Fusion Protein That Can Inhibit the Action of IL-12

Skrombolas, D., Wylie, I., Maharaj, S. M., & Frelinger, J. G. (2015) · Journal of Interferon & Cytokine Research · doi:10.1089/jir.2014.0176 · Cited by 11

Identification of novel isoforms of dairy goat EEF1D and their mRNA expression characterization

Zhang, S., Wu, X., Pan, C., Lei, C., Dang, R., Chen, H., & Lan, X. (2016) · Gene · doi:10.1016/j.gene.2016.01.013 · Cited by 11

Survival-Associated Alternative Splicing Events in Pan-Renal Cell Carcinoma

Jia, K., Wu, Y. C., Huang, J., & Wu, H. (2019) · Frontiers in Oncology · doi:10.3389/fonc.2019.01317 · Cited by 11

Advances of Antisense Oligonucleotide Technology in the Treatment of Hereditary Neurodegenerative Diseases

Lin, M., Hu, X., Chang, S., Chang, Y. Z., Bian, W., Hu, R., Wang, J., Zhu, Q., & Qiu, J. (2021) · Evidence-based Complementary and Alternative Medicine · doi:10.1155/2021/6678422 · Cited by 11

Global Analysis of UDP Glucose Pyrophosphorylase (UDPGP) Gene Family in Plants: Conserved Evolution Involved in Cell Death

Liu, S., Zhong, H., Wang, Q., Liu, C., Li, T., Peng, Z., Li, Y., Zhang, H., Liao, J., Huang, Y., et al. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.681719 · Cited by 11

Transcript isoforms of Reep6 have distinct functions in the retina

Liang, Q., Wu, N., Zaneveld, S. A., Liu, H., Fu, S., Wang, K., Bertrand, R. E., Wang, J., Li, Y., & Chen, R. (2021) · Human Molecular Genetics · doi:10.1093/hmg/ddab157 · Cited by 11

Predicting protein interaction network perturbation by alternative splicing with semi-supervised learning

Narykov, O., Johnson, N. T., & Korkin, D. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.110045 · Cited by 11

Post-transcriptional regulation through alternative splicing in the lungs of Tibetan pigs under hypoxia

Yang, Y., Yuan, H., Yang, Q., Cai, Y., Ren, Y., Li, Y., Gao, C., & Zhao, S. (2022) · Gene · doi:10.1016/j.gene.2022.146268 · Cited by 11

Occult hepatitis B — the result of the host immune response interaction with different genomic expressions of the virus

Gherlan, G. S. (2022) · World Journal of Clinical Cases · doi:10.12998/wjcc.v10.i17.5518 · Cited by 11

Recursive splicing discovery using lariats in total RNA sequencing

Hoppe, E. R., Udy, D. B., & Bradley, R. K. (2023) · Life Science Alliance · doi:10.26508/lsa.202201889 · Cited by 11

Pax2/5/8 and Pax6 alternative splicing events in basal chordates and vertebrates: a focus on paired box domain

Fábián, P., Kozmiková, I., Kozmík, Z., & Pantzartzi, C. N. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00228 · Cited by 11

Functional Implications of RNA Splicing for Human Long Intergenic Noncoding RNAs

Chen, F., Pan, C.-L., & Lin, H. (2014) · Evolutionary Bioinformatics · doi:10.4137/ebo.s20772 · Cited by 11

Alternative splicing in the aldo–keto reductase superfamily: Implications for protein nomenclature

Barski, O. A., Mindnich, R., & Penning, T. M. (2013) · Chemico-Biological Interactions · doi:10.1016/j.cbi.2012.12.012 · Cited by 11

Characterization of viral RNA splicing using whole-transcriptome datasets from host species

Zhou, C., Liu, S., Song, W., Luo, S., Meng, G., Yang, C., Yang, H., Ma, J., Wang, L., Gao, S., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-21190-7 · Cited by 10

Ovarian transcriptomic analysis reveals the alternative splicing events associated with fecundity in different sheep breeds

Miao, X., Luo, Q., Zhao, H., & Qin, X. (2018) · Animal Reproduction Science · doi:10.1016/j.anireprosci.2018.09.017 · Cited by 11

ISOGO: Functional annotation of protein-coding splice variants

Ferrer-Bonsoms, J. A., Cassol, I., Fernández-Acín, P., Castilla, C., Carazo, F., & Rubio, Á. (2020) · Scientific Reports · doi:10.1038/s41598-020-57974-z · Cited by 9

CuAS: a database of annotated transcripts generated by alternative splicing in cucumbers

Sun, Y., Zhang, Q., Liu, B., Lin, K., Zhang, Z., & Pang, E. (2020) · BMC Plant Biology · doi:10.1186/s12870-020-2312-y · Cited by 11

Subphysiological temperature induces pervasive alternative splicing in Chinese hamster ovary cells

Tzani, I., Monger, C., Motheramgari, K., Gallagher, C., Hagan, R., Kelly, P. S., Costello, A., Meiller, J., Floris, P., Zhang, L., et al. (2020) · Biotechnology and Bioengineering · doi:10.1002/bit.27365 · Cited by 11

Consequences for Pancreatic β-Cell Identity and Function of Unregulated Transcript Processing

Ghiasi, S. M., & Rutter, G. A. (2021) · Frontiers in Endocrinology · doi:10.3389/fendo.2021.625235 · Cited by 11

Alternative Splicing Mechanisms Underlying Opioid-Induced Hyperalgesia

Zhang, P., Perez, O. C., Southey, B. R., Sweedler, J. V., Pradhan, A. A. A., & Rodriguez‐Zas, S. L. (2021) · Genes · doi:10.3390/genes12101570 · Cited by 12

Influence of transcriptional variants on metastasis

Poloni, J. D. F., & Bonatto, D. (2018) · RNA Biology · doi:10.1080/15476286.2018.1493328 · Cited by 11

isoTarget: A Genetic Method for Analyzing the Functional Diversity of Splicing Isoforms In Vivo

Liu, H., Pizzano, S., Li, R., Zhao, W., Veling, M. W., Hu, Y., Yang, L., & Ye, B. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.108361 · Cited by 11

Direct nanopore sequencing of mRNA reveals landscape of transcript isoforms in apicomplexan parasitesPreprint

Lee, V. V., Judd, L. M., Jex, A. R., Holt, K. E., Tonkin, C. J., & Ralph, S. A. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.02.16.946699 · Cited by 11

Assessing conservation of alternative splicing with evolutionary splicing graphsPreprint

Zea, D. J., Laskina, S., Baudin, A., Richard, H., & Laine, É. (2021) · Genome Research · doi:10.1101/gr.274696.120 · Cited by 15

E3 SUMO ligase SIZ1 splicing variants localize and function according to external conditions

Kwak, J. S., Song, J. T., & Seo, H. S. (2024) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiae108 · Cited by 10

Potential of Cell-Penetrating Peptide-Conjugated Antisense Oligonucleotides for the Treatment of SMA

Leckie, J., & Yokota, T. (2024) · Molecules · doi:10.3390/molecules29112658 · Cited by 10

Breaking down the barriers to animal-free research

Hope, L., & Bailey, J. (2025) · Alternatives to Laboratory Animals · doi:10.1177/02611929251349465 · Cited by 12

PARP1′s Involvement in RNA Polymerase II Elongation: Pausing and Releasing Regulation through the Integrator and Super Elongation Complex

Matveeva, E. A., Dhahri, H., & Fondufe‐Mittendorf, Y. N. (2022) · Cells · doi:10.3390/cells11203202 · Cited by 10

Genome-Wide Identification of a Maize Chitinase Gene Family and the Induction of Its Expression by Fusarium verticillioides (Sacc.) Nirenberg (1976) Infection

Cázares-Álvarez, J. E., Báez-Astorga, P. A., Arroyo-Becerra, A., & Maldonado‐Mendoza, I. E. (2024) · Genes · doi:10.3390/genes15081087 · Cited by 10

Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms

Sittipongpittaya, N., Skinner, K. A., Jeffery, E. D., Watts, E. F., & Sheynkman, G. M. (2025) · Journal of Proteome Research · doi:10.1021/acs.jproteome.4c00978 · Cited by 10

Possible role of intronic polymorphisms in the PHACTR1 gene on the development of cardiovascular disease

Rodrı́guez-Pérez, J. M., Blachman-Braun, R., Pomerantz, A., Vargas‐Alarcón, G., Posadas‐Sánchez, R., & Pérez‐Hernández, N. (2016) · Medical Hypotheses · doi:10.1016/j.mehy.2016.10.012 · Cited by 10

The core spliceosomal factor U2AF1 controls cell-fate determination via the modulation of transcriptional networks

Laaref, A. M., Manchon, L., Barèche, Y., Lapasset, L., & Tazi, J. (2020) · RNA Biology · doi:10.1080/15476286.2020.1733800 · Cited by 10

Canonical ErbB-2 isoform and ErbB-2 variant c located in the nucleus drive triple negative breast cancer growth

Chervo, M. F., Russo, R. I. C., Petrillo, E., Izzo, F., Martino, M. D., Bellora, N., Cenciarini, M. E., Chiauzzi, V. A., de la Parra, L. S. M., Pereyra, M. G., et al. (2020) · Oncogene · doi:10.1038/s41388-020-01430-9 · Cited by 11

Processing of coding and non-coding RNAs in plant development and environmental responses

Si, F., Cao, X., Song, X., & Deng, X. M. (2020) · Essays in Biochemistry · doi:10.1042/ebc20200029 · Cited by 10

Alternative splicing: An important regulatory mechanism in colorectal carcinoma

Wang, J., Wang, C., Li, L., Yang, L., Wang, S., Ning, X., Gao, S., Ren, L., Chaulagain, A., Tang, J., et al. (2021) · Molecular Carcinogenesis · doi:10.1002/mc.23291 · Cited by 11

Alternative splicing and gene co-expression network-based analysis of dizygotic twins with autism-spectrum disorder and their parents

Okay, K., Varış, P. Ü., Miral, S., Ekinci, B., Yaraş, T., Karakülah, G., & Oktay, Y. (2021) · Genomics · doi:10.1016/j.ygeno.2021.05.038 · Cited by 10

A novel role for nucleolin in splice site selection

Shefer, K., Boulos, A., Gotea, V., Arafat, M., Ben-Chaim, Y., Muharram, A., Isaac, S., Eden, A., Sperling, J. M., Elnitski, L. L., et al. (2022) · RNA Biology · doi:10.1080/15476286.2021.2020455 · Cited by 10

Broad misappropriation of developmental splicing profile by cancer in multiple organs

Singh, A., Rajeevan, A., Gopalan, V., Agrawal, P., Day, C., & Hannenhalli, S. S. (2022) · Nature Communications · doi:10.1038/s41467-022-35322-1 · Cited by 9

Beyond quantification: in situ analysis of transcriptome and pre‐ mRNA alternative splicing at the nanoscale

Cui, Y., Liu, J., & Irudayaraj, J. (2016) · Wiley Interdisciplinary Reviews Nanomedicine and Nanobiotechnology · doi:10.1002/wnan.1443 · Cited by 11

Novel short isoforms of adenylyl cyclase as negative regulators of cAMP production

Vallin, B., Legueux-Cajgfinger, Y., Clément, N., Glorian, M., Duca, L., Vincent, P., Limon, I., & Blaise, R. (2018) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2018.06.012 · Cited by 10

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly

Zhao, J., Feng, H., Zhu, D., & Lin, Y. (2021) · IEEE Transactions on Computational Biology and Bioinformatics · doi:10.1109/tcbb.2021.3083277 · Cited by 10

RNA binding proteins as mediators of pathological cardiac remodeling

Acharya, P., Parkins, S., & Tranter, M. (2024) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2024.1368097 · Cited by 9

Importance of Transcript Variants in Transcriptome Analyses

Vo, K., Sharma, Y., Paul, A., Mohamadi, R., Mohamadi, A., Fields, P. E., & Rumi, M. A. K. (2024) · Cells · doi:10.3390/cells13171502 · Cited by 9

Heavy metals in the diet: unraveling the molecular pathways linked to neurodegenerative disease risk

Guevara‐Ramírez, P., Tamayo‐Trujillo, R., Cadena-Ullauri, S., Ruiz‐Pozo, V. A., Paz‐Cruz, E., Annunziata, G., Verde, L., Frías-Toral, E., Simancas‐Racines, D., & Zambrano, A. K. (2024) · Food and Agricultural Immunology · doi:10.1080/09540105.2024.2434457 · Cited by 9

Chicken ZNF764L gene: mRNA expression profile, alternative splicing analysis and association analysis between first exon indel mutation and economic traits

Han, R., Wang, X., Wang, X., Guo, Y., Li, D., Li, G., Wang, Y., Kang, X., & Li, Z. (2019) · Gene · doi:10.1016/j.gene.2019.02.010 · Cited by 9

Detection of Bovine TMEM95 p.Cys161X Mutation in 13 Chinese Indigenous Cattle Breeds

Zhang, S., Peng, K., Zhang, G., Cao, Y., Zhang, M., Chen, H., Lei, C., Lan, X., & Zhao, Y. (2019) · Animals · doi:10.3390/ani9070444 · Cited by 9

Single-molecule real-time transcript sequencing of developing cotton anthers facilitates genome annotation and fertility restoration candidate gene discovery

Li, T., Zhang, X., Guo, L., Qi, T., Tang, H., Wang, H., Qiao, X., Zhang, M., Zhang, B., Feng, J., et al. (2021) · Genomics · doi:10.1016/j.ygeno.2021.11.014 · Cited by 9

Probing Isoform Switching Events in Various Cancer Types: Lessons From Pan-Cancer Studies

Karakulak, T., Moch, H., von Mering, C., & Kahraman, A. (2021) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2021.726902 · Cited by 10

Inhibition of FAM46/TENT5 activity by BCCIPα adopting a unique fold

Liu, S., Chen, H., Yin, Y., Lu, D., Gao, G., Li, J., Bai, X., & Zhang, X. (2023) · Science Advances · doi:10.1126/sciadv.adf5583 · Cited by 9

Unique transcriptomes of sensory and non-sensory neurons: insights from Splicing Regulatory States

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