Function of alternative splicing

AUGUSTUS: ab initio prediction of alternative transcripts

Stanke, M., Keller, O., Gunduz, I., Hayes, A., Waack, S., & Morgenstern, B. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl200 · Cited by 2,829

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

Christofk, H. R., Vander Heiden, M. G., Harris, M. H., Ramanathan, A., Gerszten, R. E., Wei, R., Fleming, M. D., Schreiber, S. L., & Cantley, L. C. (2008) · Nature · doi:10.1038/nature06734 · Cited by 2,820

The Spliceosome: Design Principles of a Dynamic RNP Machine

Wahl, M. C., Will, C. L., & Lührmann, R. (2009) · Cell · doi:10.1016/j.cell.2009.02.009 · Cited by 2,665

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

Tripathi, V., Ellis, J. D., Shen, Z., Song, D. Y., Pan, Q., Watt, A. T., Freier, S. M., Bennett, C. F., Sharma, A., Bubulya, P. A., et al. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.08.011 · Cited by 2,291

Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

Berget, S. M., Moore, C. L., & Sharp, P. A. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.8.3171 · Cited by 1,483

Function of alternative splicing

Stamm, S., Ben‐Ari, S., Rafalska, I., Tang, Y., Zhang, Z., Toiber, D., Thanaraj, T. A., & Soreq, H. (2004) · Gene · doi:10.1016/j.gene.2004.10.022 · Cited by 1,398

The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing

Makeyev, E. V., Zhang, J., Carrasco, M. A., & Maniatis, T. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.07.015 · Cited by 1,395

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

Licatalosi, D. D., Mele, A., Fak, J. J., Ule, J., Kayikci, M., Chi, S. W., Clark, T. A., Schweitzer, A. C., Blume, J. E., Wang, X., et al. (2008) · Nature · doi:10.1038/nature07488 · Cited by 1,352

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

Stanke, M., Schöffmann, O., Morgenstern, B., & Waack, S. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-62 · Cited by 1,304

Understanding alternative splicing: towards a cellular code

Matlin, A. J., Clark, F., & Smith, C. W. J. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1645 · Cited by 1,299

IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes

Ng, I.-M., Huang, J., Tsai, S.-C., & Tsai, H. (2017) · Database · doi:10.1093/database/bax069 · Cited by 1

Functional categories of RNA regulation

Chavali, P. L., Ramachandran, R., & Chavali, S. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-817193-6.00003-0 · Cited by 1

Regulation of splicing in cardiovascular disease

Farrugia, R. C., Xuereb‐Anastasi, A., & Wettinger, S. B. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-822258-4.00013-4 · Cited by 1

Contribution of Transcriptome to Elucidate the Biology of Plasmodium spp

Parreira, K. S., Scarpelli, P. H., Lima, W. R., & Garcia, C. R. S. (2022) · Current Topics in Medicinal Chemistry · doi:10.2174/1568026622666220111140803 · Cited by 1

The Role of Alternative Splicing in Cancer: Regulatory Mechanism, Therapeutic Strategy, and Bioinformatics Application

Pan, Y., Liu, B., & Pei, D. (2022) · DNA and Cell Biology · doi:10.1089/dna.2022.0322 · Cited by 1

Genome-wide identification of alternative splicing associated with histone deacetylase inhibitor in cutaneous T-cell lymphomas

Yu, S., Zhang, J., Ding, Y., Kang, X., & Pu, X. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.937623 · Cited by 1

Current Progress of Bioinformatics for Human Health

Zhao, J., Zhang, S., Wu, S., Zhang, W., & Su, X. (2023) · Translational bioinformatics · doi:10.1007/978-981-19-8210-1_8 · Cited by 2

Building alternative splicing and evolution-aware sequence-structure maps for protein repeats

Szatkownik, A., Zea, D. J., Richard, H., & Laine, E. (2023) · Journal of Structural Biology · doi:10.1016/j.jsb.2023.107997 · Cited by 1

Identification of Key Prognostic Alternative Splicing Events of Costimulatory Molecule-Related Genes in Colon Cancer

Ding, H., Shi, H., Chen, W., Liu, Z., Yang, Z. H., Li, X., Qiu, Z., & Zhuo, H. (2023) · Combinatorial Chemistry & High Throughput Screening · doi:10.2174/0113862073249972231026060301 · Cited by 1

Hemizygous splicing variant in CNKSR2 results in X‐linked intellectual developmental disorder

Lou, Y., Shi, X., Su, G., Guo, Y., Gao, L., Wang, Y., Miao, P., & Feng, J. (2024) · Molecular Genetics & Genomic Medicine · doi:10.1002/mgg3.2389 · Cited by 2

Alternative Splicing of Pre-mRNA Matters in Oral Diseases

Yue, M., & Jia, R. (2024) · Current Gene Therapy · doi:10.2174/0115665232302948240718050212 · Cited by 1

Alternative splicing perspective to prey preference of environmentally friendly biological agent Cryptolaemus montrouzieri

Liu, Y., Xia, X., Ren, W., Hong, X., Tang, X., Pang, H., & Yang, Y. (2024) · BMC Genomics · doi:10.1186/s12864-024-10870-6 · Cited by 1

The Arabidopsis thaliana core splicing factor PORCUPINE/SmE1 requires intron-mediated expression

Dikaya, V., Rojas-Murcia, N., Benstein, R. M., Eiserhardt, W. L., & Schmid, M. (2025) · PLoS ONE · doi:10.1371/journal.pone.0318163 · Cited by 1

Transcriptomic analysis reveals the molecular mechanisms of heterosis in low-temperature tolerance in the hybrids of Argopecten scallops

Zhu, P., Wang, G., Liu, Y., Wen, L., Bo, Q., Liu, G., Wang, C., & Liu, B. (2025) · Comparative Biochemistry and Physiology Part D Genomics and Proteomics · doi:10.1016/j.cbd.2025.101526 · Cited by 1

Environmental Changes Drives the Transcriptome and Gene Regulation Plasticity During Sea Lice Infestation

Casuso, A., Valenzuela‐Muñoz, V., Sáez-Vera, C., & Gallardo‐Escárate, C. (2025) · Marine Biotechnology · doi:10.1007/s10126-025-10459-4 · Cited by 1

METTL3 and METTL14 drive pancreatic adenocarcinoma progression via m6A-dependent alternative splicing in PANC-1 cells

Tang, B., Wang, L., Wei, D., Wang, T., Zou, R., Su, K., Wu, T., Cun, D., & Wang, Q. (2025) · Discover Oncology · doi:10.1007/s12672-025-03393-3 · Cited by 1

Ion channel messenger RNA processing defects and arrhythmia

Dudley, S. C., & Zhou, A. (2014) · Current Biomarker Findings · doi:10.2147/cbf.s37417 · Cited by 1

Identification and quantitative mRNA analysis of a novel splice variant of GPIHBP1 in dairy cattle

Yang, J., Liu, X. E., Zhang, Q., & Jiang, L. (2014) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/2049-1891-5-50 · Cited by 1

Gene self-control: when pre-mRNA splicing variants become competing endogenous RNAs

Lu, Z. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00405 · Cited by 1

Plant pathogenic oomycetes: counterbalancing resistance, susceptibility and adaptation

Burkhardt, A., & Day, B. (2016) · Canadian Journal of Plant Pathology · doi:10.1080/07060661.2016.1149519 · Cited by 1

Allele-specific splicing effects on DKKL1 and ZNF419 transcripts in HeLa cells

Martin, G., Selçuklu, S. D., Schouest, K. R., Nembaware, V., McKeown, P. C., Seoighe, C., & Spillane, C. (2016) · Gene · doi:10.1016/j.gene.2016.11.004 · Cited by 1

Modularized Perturbation of Alternative Splicing Across Human Cancers

Du, Y., Li, S., Du, R., Shi, N., Arai, S., Chen, S., Wang, A., Zhang, Y., Fang, Z., Zhang, T., et al. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00246 · Cited by 1

Detection of truncated isoforms of human neuroserpin lacking the reactive center loop: Implications in noninhibitory role

Fatima, S., Ansari, S., Bano, S., Ahamad, S., Ishqi, H. M., Tabish, M., Gupta, D. K., Rehman, S. U., & Jairajpuri, M. A. (2021) · IUBMB Life · doi:10.1002/iub.2475 · Cited by 1

The cell cycle arrested results in the premature advent of apical leaflets development cessation in Zygophyllum xanthoxylon

Fu, G., Li, J., Li, L., Wu, S., Wu, Y., Wang, Y., Liu, C., & Zhang, L. (2022) · Trees · doi:10.1007/s00468-021-02252-2 · Cited by 1

Fundamentals of Genetics

Bujakowska, K. M., & Dryja, T. P. (2021) · Springer eBooks · doi:10.1007/978-3-319-90495-5_146-1 · Cited by 1

Targeting the Right Protein Isoform: Mass Spectrometry‐Based Proteomic Characterization of Alternative Splice Variants

Wu, J. (2017) · Wiley eBooks · doi:10.1002/9781119371779.ch6 · Cited by 1

Developmental and cell-specific expression of Cacna1d splice variantsPreprint

LaCarubba, B., Bunda, A., Savage, K. R., Hannah, S. S., Akiki, M., Thomas, F., & Andrade, A. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/598722 · Cited by 1

Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved AS-NMD pathwaysPreprint

Kovalak, C., Donovan, S., Bicknell, A. A., Metkar, M., & Moore, M. J. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/847004 · Cited by 1

Deficiency of the splicing factor RBM10 limits EGFR inhibitor response in EGFR mutant lung cancerPreprint

Nanjo, S., Wu, W., Karachaliou, N., Blakely, C. M., Suzuki, J., Ali, S. M., Kerr, D. L., Olivas, V. R., Shue, J., Rotow, J. K., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.10.26.356352 · Cited by 1

Assessing Conservation of Alternative Splicing with Evolutionary Splicing GraphsPreprint

Zea, D. J., Laskina, S., Baudin, A., Richard, H., & Laine, É. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.14.382820 · Cited by 1

A transcriptomic census reveals that Rbfox contributes to a broad but selective recapitulation of peripheral tissue splicing patterns in the thymusPreprint

Jansen, K., Shikama‐Dorn, N., Attar, M., Maio, S., Lopopolo, M., Buck, D., Holländer, G. A., & Sansom, S. N. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.03.06.980870 · Cited by 1

Profiling the m 6 A regulated RNA expression patterns and alternative splicing features in esophageal carcinomaPreprint

Pu, Y., Kong, L., Gao, F., Zhao, F., Xia, R., Cai, C., Tan, Y., Huang, D., Li, Z., Ge, F., et al. (2022) · Research Square · doi:10.21203/rs.3.rs-1556752/v1 · Cited by 1

Genetic basis of expression and splicing underlying spike architecture in wheat ( Triticum aestivum L.)Preprint

Yang, G., Pan, Y., Cui, L., Chen, M., Zeng, Q., Pan, W., Liang, Z., Edwards, D., Batley, J., Han, D., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.04.539218 · Cited by 1

Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversityPreprint

Murali, M., Saquing, J., Lu, S., Gao, Z., Jordan, B. T., Wakefield, Z. P., Fiszbein, A., Cooper, D. R., Castaldi, P. J., Korkin, D., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.15.585320 · Cited by 1

Diviner uncovers hundreds of novel human (and other) exons though comparative analysis of proteinsPreprint

Nord, A. J., & Wheeler, T. J. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.05.592595 · Cited by 1

IFDlong: an isoform and fusion detector for accurate annotation and quantification of long-read RNA-seq dataPreprint

Wang, W., Li, Y., Ko, S., Feng, N., Zhang, M., Liu, J.-J., Zheng, S., Ren, B., Yu, Y. P., Luo, J., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.11.593690 · Cited by 1

Disease-associated genetic variants can cause mutations in tissue-specific protein isoformsPreprint

Weykopf, G., Badonyi, M., Friman, E. T., Nguyen, J. M. H., Ioannou, A., Livesey, B., Coutts, A. A., Hird, E. F., Wham, M., Stanton, C. M., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.24.666385 · Cited by 1

Differential Transcript Usage Analysis Incorporating Quantification Uncertainty Via Compositional Measurement Error Regression ModelingPreprint

Buren, S. V., & Rashid, N. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.05.22.111450 · Cited by 1

Study of starch metabolism in tomato fruit by using forward and reverse genetic approaches

Wang, J. (2020) · doi:10.70675/cc984bc9z0951z4b6ez8486z2ff5f86c1489 · Cited by 1

Caracterização molecular e bioquímica de um transportador mitocondrial de nicotinamida adenina dinucleotídeo de Aspergillus fumigatus

Bálico, L. D. L. D. L. (2014) · doi:10.11606/d.60.2014.tde-17042015-135749

Ambient temperature‐directed flowering time regulation : the role of alternative splicing

Verhage, D. S. L. (2017) · doi:10.18174/393113

Targeting Pre-mRNA Processing in Cancer

Webb, T. R., & Stamm, S. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-409547-2.12398-4

Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK familyPreprint

Ait-hamlat, A., Zea, D. J., Labeeuw, A., Polit, L., Richard, H., & Laine, É. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/119891

Caracterização funcional de farnesil difosfato sintase/geranilgeranil difosfato sintase (FPPS/GGPPS) e 1,4-dihidroxi-2-naftoato preniltransferase (MenA) envolvidas respectivamente na via de isoprenóides e da vitamina K em Plasmodium falciparum.

Gabriel, H. B. (2016) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.42.2016.tde-22022016-153037

Junction-skipping regulation in complex diseasePreprint

Liu, R., Karjalainen, J. M., Byrnes, A., Cummings, B. B., Gormley, P., Ruan, Y., Park, Y., Hou, L., Nguyen, K. T., Xavier, R. J., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/804039

Knight in Splicing Armor: Alternative Splicing as a Neuroprotective Mechanism

Park, J., Tao, X., & Zhai, R. G. (2020) · OBM Genetics · doi:10.21926/obm.genet.2001106

Allele-specific alternative splicing in human tissuesPreprint

Amoah, K., Hsiao, Y.-H. E., Bahn, J. H., Sun, Y., Burghard, C. P., Tan, B. X., Yang, E.-W., & Xiao, X. G. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.05.04.077255

Splicing and Alternative Splicing and the Impact of Mechanics

Mierke, C. T. (2020) · Biological and medical physics, biomedical engineering · doi:10.1007/978-3-030-58532-7_13

Expression of CLEC4A in porcine tissues and leukocyte populations and characterization of mRNA splice variants

Álvarez, B., Revilla, C., Domı́nguez, J., & Ezquerra, Á. (2021) · Molecular Immunology · doi:10.1016/j.molimm.2021.01.027

Alternatively Splicing Interactomes Identify Novel Isoform-Specific Partners for NSD2

Wang, W., Chen, Y., Zhao, J., Chen, L., Song, W., Li, L., & Lin, G. N. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.612019 · Cited by 1

Functional evidence (I) transcripts and RNA-splicing outline

Colombo, M., Radice, P., & de la Hoya, M. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-820519-8.00004-1

Alternative Splicing Related Genetic Variants in lncRNA BCLETare Associated with Bladder Cancer Risk in the Chinese PopulationPreprint

Liu, H., Wang, X., Guo, Z., Sun, G., Lv, Q., Qin, C., Yuan, L., Wang, Y., Du, M., Wang, M., et al. (2021) · Research Square · doi:10.21203/rs.3.rs-892485/v1

Efecto de los niveles de oxígeno (O2) en la expresión del ARNm de los componentes angiogénicos y antiangiogénicos del Factor de Crecimiento del Endotelio Vascular (VEGF) en cultivo de células de la granulosa de folículos de bovinos

Hernández-Morales, J. (2019) · doi:10.24275/uami.0g354f281

Identification of biological characteristics associated with RNA-binding proteins (RBPs) target sites

Ciamponi, F. E. (2018) · doi:10.47749/t/unicamp.2018.1096493

Long non-coding RNA functional annotation : machine learning approaches

Zhang, Y. (2021) · doi:10.32657/10356/154930

Molecular Mechanisms of Fungal SignalingPreprint

Jacob, S., Bühring, S., & Bersching, K. (2022) · Preprints.org · doi:10.20944/preprints202203.0168.v1

Illumina-based Whole De Novo Transcriptome Profiling and Diosgenin Biosynthetic pathway of Tribulus terrestris: A Medicinal herbPreprint

Tyagi, P., & Ranjan, R. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.03.21.485112

Yeast Galactokinase in Closed Conformation Can Switch between Catalytic and Signal Transducer StatesPreprint

Giri, N., & Bhat, P. J. (2022) · SSRN Electronic Journal · doi:10.2139/ssrn.4051102

Sirtuin gene isoforms and genomic sequences of mouse and humans: Divergence across speciesPreprint

Zhang, X., Azhar, G., Ameer, F. S., Crane, J., & Wei, J. Y. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.04.18.488659

Faculty Opinions recommendation of The fitness cost of mis-splicing is the main determinant of alternative splicing patterns.

Huynen, M. A. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.732057459.793544845

Peer Review #1 of "Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas (v0.1)"

(2019) · PeerJ · doi:10.7287/peerj.8245v0.1/reviews/1

Peer Review #3 of "Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas (v0.2)"

(2019) · PeerJ · doi:10.7287/peerj.8245v0.2/reviews/3

Peer Review #2 of "Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas (v0.1)"

(2019) · PeerJ · doi:10.7287/peerj.8245v0.1/reviews/2

Peer Review #1 of "Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas (v0.2)"

(2019) · PeerJ · doi:10.7287/peerj.8245v0.2/reviews/1

Alternative Splicing

Ezkurdia, I., Valencia, A., & Tress, M. L. (2019) · Springer eBooks · doi:10.1007/978-3-642-35943-9_427-1

Faculty Opinions recommendation of The RNA-binding protein caper is required for sensory neuron development in Drosophila melanogaster.

Gupton, S. L., & Menon, S. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.727651196.793552041

Faculty Opinions recommendation of Extensive RNA editing and splicing increase immune self-representation diversity in medullary thymic epithelial cells.

Guigó, R. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.726884122.793566844

Fast recontruction of compact context-specific network modelsPreprint

Pacheco, M. P. (2018) · Thesis Commons (OSF Preprints) · doi:10.31237/osf.io/8xcwa

U5 snRNA-specific proteins studies, RNA-protein interaction, assembly of the spliceosomal Sm complex, and function implications of splicing in Cyanidioschyson merolae

Shidi, F. A. R. (2018) · doi:10.24124/2018/58849

Peer Review #3 of "Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas (v0.1)"

(2019) · PeerJ · doi:10.7287/peerj.8245v0.1/reviews/3

Nonsequential Pre-mRNA Splicing: From Basic Understanding to Impacts on Splice-Manipulating Therapies

Ham, K. A., Wilton, S. D., & Aung-Htut, M. T. (2022) · RNA technologies · doi:10.1007/978-3-031-08415-7_19

Understanding the Code of Life: Holistic Conceptual Modeling of the Genome

Alberto García, S. (2022) · doi:10.4995/thesis/10251/191432

Dissecting big RNA-Seq cancer data using machine learning to find disease-associated genes and the causal mechanism

Sarmah, D. T., Kumar, S., Chatterjee, S., & Bairagi, N. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-85713-0.00015-3

Single Transcript-Level Metabolic Responsive Landscape of Human Liver TranscriptomePreprint

Jiang, C., Li, P., Ma, Y., Yoneda, N., Nishiwaki, M., Ohnishi, Y., Suemizu, H., & Cao, H. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.07.06.544842

Cellular selectivity and kinetics of clinical kinase inhibitors

Berger, L. M. (2023) · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt) · doi:10.21248/gups.72279

Data from The Amino-Terminal Oligomerization Domain of Angiopoietin-2 Affects Vascular Remodeling, Mammary Gland Tumor Growth, and Lung Metastasis in Mice

Kapiainen, E., Kihlström, M. K., Pietilä, R. S., Kaakinen, M., Ronkainen, V., Tu, H., Heikkinen, A., Devarajan, R., Miinalainen, I., Laitakari, A., et al. (2023) · doi:10.1158/0008-5472.c.6512358.v1

Exploring Splicing Variants and Novel Genes in Sacred Lotus Based on RNA-seq Data

Zhang, X., Yu, Z., & Yang, P. (2023) · Phyton · doi:10.32604/phyton.2023.029482

Fortuna Detects Novel Splicing in Drosophila scRNASeq Data

Borozan, B., Borozan, L., Ševerdija, D., Matijević, D., & Canzar, S. (2023) · International Convention on Information and Communication Technology, Electronics and Microelectronics · doi:10.23919/mipro57284.2023.10159716

Alternative splicing and its regulation in the malaria vector Anopheles gambiaePreprint

Díaz-Terenti, B., & Gómez‐Díaz, E. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.07.18.549290

Role of Iroquois homeobox 4 (IRX4) isoforms in prostate cancer

Vitharanage, A. (2023) · Queensland University of Technology · doi:10.5204/thesis.eprints.242137

Remodelación estructural y funcional en la respuesta transcriptómica de salmón del Atlántico frente a patógenos que afectan a la salmonicultura.

Escárate, C. G. (2023) · doi:10.29393/tdudec-31ly1re31

An array of signal-specific MoYpd1 isoforms determines full virulence in the pathogenic fungus Magnaporthe oryzaePreprint

Bühring, S., Brunner, A., Heeb, K., Mergard, M.-P., Schmauck, G., & Jacob, S. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.21.558925

Characterization of Alternative Splicing During Mammalian Brain Development Reveals the Magnitude of Isoform Diversity and its Effects on Protein Conformational ChangesPreprint

Alieh, L. H. A., de Toledo, B. C., Hadarovich, A., Tóth-Petróczy, Á., & Calegari, F. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.10.11.561865

Desenvolvimento de ferramentas e algoritmos em Computational Strain Optmization Models.

Ohira, G. D. O. M. (2023) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.3.2023.tde-29112023-143720

Landscape analysis of alternative splicing in kidney renal clear cell carcinoma and their clinical significance

Cheng, S., Zhou, Z., Liu, J., Li, J., Wang, Y., Xiao, J., & Luo, Y. (2024) · Aging · doi:10.18632/aging.205915

AI-Assisted Processing Pipeline to Boost Protein Isoform Detection

The, M., Picciani, M., Jensen, C. B., Gabriel, W., Küster, B., & Wilhelm, M. (2024) · Methods in molecular biology · doi:10.1007/978-1-0716-4007-4_10

In silico and in cellulo approaches for functional annotation of human protein splice variants

Kiseleva, O. I., Arzumanian, V. A., Kurbatov, I. Y., & Poverennaya, E. V. (2024) · Biomeditsinskaya Khimiya · doi:10.18097/pbmc20247005315

The Importance of Regulatory and Coding Changes in Developmental Evolution

Sadier, A. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-15750-9.00057-4

Short internal open reading frames repress the translation of N-terminally truncated proteoforms

Fettig, R., Gonda, Z., Walter, N. M., Sallmann, P., Thanisch, C., Winter, M., Bauer, S., Zhang, L., Linden, G., Litfin, M., et al. (2025) · EMBO Reports · doi:10.1038/s44319-025-00390-z

An SNP for the splice donor variant of i-type lysozyme 2 (lyz-i2) is associated with the resistance of Vibrio harveyi in Pacific white shrimp

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