The Intertwined Roles of Transcription and Repair Proteins

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Genome maintenance mechanisms for preventing cancer

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The Homeoprotein Nanog Is Required for Maintenance of Pluripotency in Mouse Epiblast and ES Cells

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The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway

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ATM Phosphorylates Histone H2AX in Response to DNA Double-strand Breaks

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Charting a dynamic DNA methylation landscape of the human genome

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Transcription regulation and animal diversity

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Suppression of induced pluripotent stem cell generation by the p53–p21 pathway

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Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

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Linking the p53 tumour suppressor pathway to somatic cell reprogramming

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Active DNA demethylation: many roads lead to Rome

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Transcription-coupled DNA repair: two decades of progress and surprises

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R Loops: From Transcription Byproducts to Threats to Genome Stability

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A p53-mediated DNA damage response limits reprogramming to ensure iPS cell genomic integrity

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DNA interstrand crosslink repair and cancer

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The Ink4/Arf locus is a barrier for iPS cell reprogramming

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Immortalization eliminates a roadblock during cellular reprogramming into iPS cells

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A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells

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A Topoisomerase IIß-Mediated dsDNA Break Required for Regulated Transcription

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Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair

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DNA Repair Helicase: a Component of BTF2 (TFIIH) Basic Transcription Factor

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Inactivation of the SR Protein Splicing Factor ASF/SF2 Results in Genomic Instability

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R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells

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Orchestrated response: a symphony of transcription factors for gene controlPreprint

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Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation

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Repair of Endogenous DNA Damage

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DNA repair mechanisms in dividing and non-dividing cells

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UV-Induced Ubiquitylation of XPC Protein Mediated by UV-DDB-Ubiquitin Ligase Complex

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Nuclear Receptor-Induced Chromosomal Proximity and DNA Breaks Underlie Specific Translocations in Cancer

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A Role for Small RNAs in DNA Double-Strand Break Repair

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Transcriptional coactivator complexes.

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Genome-wide Profiling of 5-Formylcytosine Reveals Its Roles in Epigenetic Priming

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The AID/APOBEC family of nucleic acid mutators

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Site-specific DICER and DROSHA RNA products control the DNA-damage response

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DNA Oxidation as Triggered by H3K9me2 Demethylation Drives Estrogen-Induced Gene Expression

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Protein interaction cloning in yeast: identification of mammalian proteins that react with the leucine zipper of Jun.

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High‐resolution profiling of γH2AX around DNA double strand breaks in the mammalian genome

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A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

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Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics

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R-loop-mediated genomic instability is caused by impairment of replication fork progressionPreprint

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A multistep damage recognition mechanism for global genomic nucleotide excision repair

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Topoisomerases facilitate transcription of long genes linked to autism

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Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability

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Mechanisms of transcription-coupled DNA repair

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ATP-Dependent Chromatin Remodeling by the Cockayne Syndrome B DNA Repair-Transcription-Coupling Factor

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Yeast Sen1 Helicase Protects the Genome from Transcription-Associated Instability

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Transcriptional regulation and the role of diverse coactivators in animal cells

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Centrosome Protein Centrin 2/Caltractin 1 Is Part of the Xeroderma Pigmentosum Group C Complex That Initiates Global Genome Nucleotide Excision Repair

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TFIIH: when transcription met DNA repair

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The connection between transcription and genomic instability

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Transcription as a source of genome instability

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Structural visualization of key steps in human transcription initiation

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The Xeroderma Pigmentosum Group C Protein Complex XPC-HR23B Plays an Important Role in the Recruitment of Transcription Factor IIH to Damaged DNA

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Transcription-replication encounters, consequences and genomic instability

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RNA Polymerase Backtracking in Gene Regulation and Genome Instability

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NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack

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The residual repair capacity of xeroderma pigmentosum complementation group C fibroblasts is highly specific for transcriptionally active DNA

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CSB Is a Component of RNA Pol I Transcription

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Genome-wide Chromatin Interactions of the Nanog Locus in Pluripotency, Differentiation, and Reprogramming

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Klf4 Organizes Long-Range Chromosomal Interactions with the Oct4 Locus in Reprogramming and Pluripotency

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Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation

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The enigmatic thymine DNA glycosylase

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Suppression of induced pluripotent stem cell generation by the p53-p21 pathway

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Involvement of SLX4 in interstrand cross-link repair is regulated by the Fanconi anemia pathway

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DNA damage response in adult stem cells: pathways and consequences

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Molecular Biology of Fanconi Anemia: Implications for Diagnosis and Therapy

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XPG Stabilizes TFIIH, Allowing Transactivation of Nuclear Receptors: Implications for Cockayne Syndrome in XP-G/CS Patients

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TAF12 Recruits Gadd45a and the Nucleotide Excision Repair Complex to the Promoter of rRNA Genes Leading to Active DNA Demethylation

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Senataxin, Defective in the Neurodegenerative Disorder Ataxia with Oculomotor Apraxia 2, Lies at the Interface of Transcription and the DNA Damage Response

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The homologous recombination machinery modulates the formation of RNA–DNA hybrids and associated chromosome instability

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RNA Polymerase Encounters with DNA Damage: Transcription-Coupled Repair or Transcriptional Mutagenesis?

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A DNA Repair Complex Functions as an Oct4/Sox2 Coactivator in Embryonic Stem Cells

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GADD45A Does Not Promote DNA Demethylation

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DNA repair factor XPC is modified by SUMO-1 and ubiquitin following UV irradiation.

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Cotranscriptional processes and their influence on genome stabilityPreprint

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Direct evidence for the effect of transcription on local DNA supercoiling in vivo

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Nucleotide excision repair: new tricks with old bricks

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TFIIH Plays an Essential Role in RNA Polymerase I Transcription

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Overcoming reprogramming resistance of Fanconi anemia cells

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Transcription induces the formation of a stable RNA.DNA hybrid in the immunoglobulin alpha switch region.

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Retinoic Acid Receptors Interact Physically and Functionally with the T:G Mismatch-specific Thymine-DNA Glycosylase

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Regulated interaction of the Fanconi anemia protein, FANCD2, with chromatin

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Intrachromosomal Looping Is Required for Activation of Endogenous Pluripotency Genes during Reprogramming

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5-Methylcytosine DNA Demethylation: More Than Losing a Methyl Group

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XPG and XPF Endonucleases Trigger Chromatin Looping and DNA Demethylation for Accurate Expression of Activated Genes

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T:G Mismatch-specific Thymine-DNA Glycosylase Potentiates Transcription of Estrogen-regulated Genes through Direct Interaction with Estrogen Receptor α

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Shifting Players and Paradigms in Cell-Specific Transcription

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Role for topoisomerase 1 in transcription-associated mutagenesis in yeast

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Developmental regulation of transcription initiation: more than just changing the actors

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Le facteur de réparation XPC est un cofacteur de l'ARN polymérase II régulant les modifications post-traductionnelles des histones lors de la transcription

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