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RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes
Abstract
CRISPR adaptive immunity pathways protect prokaryotic cells against foreign nucleic acids using CRISPR RNA (crRNA)-guided nucleases. In type VI-A CRISPR-Cas systems, the signature protein Cas13a (formerly C2c2) contains two separate ribonuclease activities that catalyze crRNA maturation and ssRNA degradation. The Cas13a protein family occurs across different bacterial phyla and varies widely in both protein sequence and corresponding crRNA sequence conservation. Although grouped phylogenetically together, we show that the Cas13a enzyme family comprises two distinct functional groups that recognize orthogonal sets of crRNAs and possess different ssRNA cleavage specificities. These functional distinctions could not be bioinformatically predicted, suggesting more subtle co-evolution of Cas13a enzymes. Additionally, we find that Cas13a pre-crRNA processing is not essential for ssRNA cleavage, although it enhances ssRNA targeting for crRNAs encoded internally within the CRISPR array. We define two Cas13a protein subfamilies that can operate in parallel for RNA detection both in bacteria and for diagnostic applications.
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In subtype VI-A the processing step is not essential, since pre-crRNA molecules can be used as guides for target cleavage.
“However, in subtype VI-A the processing step is not essential, since pre-crRNA molecules can be used as guides for target cleavage [39].”
From CRISPR-Cas: Converting A Bacterial Defence Mechanism into A State-of-the-Art Genetic Manipulation Tool (2019) · cites this paper as [39]
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Self-citationTranscriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors
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Metadata
- Authors
- East-Seletsky, A., O’Connell, M. R., Burstein, D., Knott, G. J., & Doudna, J. A.
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2017-05
- Volume
- 66
- Issue
- 3
- Pages
- 373-383.e3
- ISSN
- 1097-2765
- Cited by
- 296
- References
- 2
- Language
- en
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