Structural Insights of Transcriptionally Active, Full-Length Androgen Receptor Coactivator Complexes
Open accessAbstract
Steroid receptors activate gene transcription by recruiting coactivators to initiate transcription of their target genes. For most nuclear receptors, the ligand-dependent activation function domain-2 (AF-2) is a primary contributor to the nuclear receptor (NR) transcriptional activity. In contrast to other steroid receptors, such as ERα, the activation function of androgen receptor (AR) is largely dependent on its ligand-independent AF-1 located in its N-terminal domain (NTD). It remains unclear why AR utilizes a different AF domain from other receptors despite that NRs share similar domain organizations. Here, we present cryoelectron microscopy (cryo-EM) structures of DNA-bound full-length AR and its complex structure with key coactivators, SRC-3 and p300. AR dimerization follows a unique head-to-head and tail-to-tail manner. Unlike ERα, AR directly contacts a single SRC-3 and p300. The AR NTD is the primary site for coactivator recruitment. The structures provide a basis for understanding assembly of the AR:coactivator complex and its domain contributions for coactivator assembly and transcriptional regulation.
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25 of 72 cited sources checked · 18 supported · 0 flagged · accuracy not yet measured
- Premisecitation
Transcriptional activation by steroid receptors depends on activation functions in both the N-terminal domain (AF-1) and ligand-binding domain (AF-2), through which coactivators are recruited to DNA-bound receptors.
“The transcriptional activation functions of the receptors reside in both the NTD (a constitutively active AF-1) and LBD (a ligand-dependent AF-2), through which essential coactivators usually are recruited with DNA-bound receptors to activate transcription (Warnmark et al., 2003).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Warnmark et al., 2003 source
- Findingcitation
The resolution of the complex map was estimated to be approximately 20 Å based on the Gold standard Fourier Shell Correlation.
“The resolution of the complex map was estimated to be ~20 Å based on the Gold standard Fourier Shell Correlation (FSC) (Supplemental Figure 3C, 3D) (Henderson et al., 2012).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Henderson et al., 2012 source
- Premisecitation
Previously published full-length nuclear hormone receptor structures do not present NTD information.
“Previously published full-length nuclear hormone receptor structures (Chandra et al., 2008; Chandra et al., 2013; Lou et al., 2014; Orlov et al., 2012) also do not present any NTD information.”
Quote in the paperSubstantial claim2 of 3 sources checked - Premisecitation
AR positive prostate cancer cells are particularly sensitive to p300 inhibitors compared to other solid tumor cells.
“It has been reported that AR positive prostate cancer cells are particularly sensitive to p300 inhibitors comparing to other solid tumor cells (Lasko et al., 2017).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Lasko et al., 2017 source
- Premisecitation
AR N/C interaction is induced by androgen stimulation.
“It was previously shown that an AR N/C interaction is induced upon androgen stimulation (Schaufele et al., 2005).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Schaufele et al., 2005 source
- Findingown data
SRC-3 interacts with the NTD of AR monomer-b.
“SRC-3 interacts with the NTD of AR monomer-b.”
Quote in the paperSubstantial claim - Findingown data
SRC-3 significantly increased p300 recruitment when AR and p300 were at low concentrations.
“We found that SRC-3 significantly increased the p300 recruitment when AR and p300 are at low concentrations (Figure 4E, compare lanes 1, 2 and 5, 6).”
Quote in the paperSubstantial claim - Findingown data
SRC-3 does not directly contact the AR LBDs in the structure.
“Based on the structure (Figure 3C), we did not observe that SRC-3 directly contacts the AR LBDs.”
Quote in the paperSubstantial claim - Findingown data
Only one SRC-3 is present in the ARE-DNA/AR/SRC-3/p300 complex.
“We observed only one SRC-3 in the ARE-DNA/AR/SRC-3/p300 complex.”
Quote in the paperSubstantial claim - Findingown data
In the presence of 17β-estradiol, the SRC-3 RID mutant lost the ability to interact with ERα, unlike wild-type SRC-3.
“In the presence of 17β-estradiol, the SRC-3 RID mutant lost the ability to interact with ERα in contrast to the WT SRC-3 (Supplemental Figure 4B).”
Quote in the paperSubstantial claim - Findingown data
AR alone modestly increased reporter mRNA levels in the presence of R1881.
“As shown in Supplemental Figure 4A, AR alone modestly increased reporter mRNA levels in the presence of R1881.”
Quote in the paperNot a substantial claim - Findingown data
The two NTDs appear to adopt different conformations, causing an asymmetric appearance of the dimer.
“Interestingly, the two NTDs appear to adopt different conformations causing an asymmetric appearance of the dimer (Figure 1B).”
Quote in the paperNot a substantial claim - Findingown data
The same three SRC-3 domains that interact with wild-type AR also have strong associations with ARV7.
“Indeed, we found that the same three domains that interact with AR WT also have strong associations with ARV7 (Figure 4C), confirming that the AR NTD mediates the interaction with SRC-3.”
Quote in the paperSubstantial claim - Findingown data
The LBD and DBD are located in the center of the AR dimer forming a tight dimerization interface.
“The LBD and DBD are located in the center of the AR dimer forming a tight dimerization interface.”
Quote in the paperNot a substantial claim - Findingown data
The two NTDs surround the LBD dimer so that only a small portion of the LBD is exposed.
“We observe that the two NTDs surround the LBD dimer so that only a small portion of the LBD is exposed.”
Quote in the paperSubstantial claim - Findingown data
The 1-669aa AR mutant interacts with SRC-3 at a level similar to full-length AR.
“As shown in Figure 4A, the 1–669aa mutant of AR interacts with SRC-3 similar to the level of association with full-length AR.”
Quote in the paperSubstantial claim - Findingown data
Superimposing the ARE-DNA/AR/AR-Ab1 density with the ARE-DNA/AR/SRC-3/p300/AR-Ab1 density demonstrated that p300 blocks the second Fab binding site of AR in the larger coactivator-bound complex.
“Superimposing the ARE-DNA/AR/AR-Ab1 density with ARE-DNA/AR/SRC-3/p300/AR-Ab1 demonstrated that the presence of p300 blocks the second Fab binding site of AR in the larger coactivator-bound complex (Supplemental Figure 4C).”
Quote in the paperSubstantial claim - Findingown data
AR forms a homodimer upon androgen binding.
“AR forms a homodimer upon androgen binding.”
Quote in the paperSubstantial claim - Findingown data
Only one AR-Ab1 density was found in the overall ARE-DNA/AR/SRC-3/p300/AR-Ab1 density.
“Only one AR-Ab1 density was found in the overall ARE-DNA/AR/SRC-3/p300/AR-Ab1 density.”
Quote in the paperSubstantial claim - Findingreasoning
Addition of SRC-3 did not alter the interaction when AR and p300 were at high concentrations.
“Addition of SRC-3 did not alter the interaction when AR and p300 at high concentrations probably due to saturated low-affinity between the two proteins.”
Quote in the paperSubstantial claim - Findingown data
In addition to the RID, the HAT domain also interacted with ERα.
“In addition to the RID, the HAT domain also interacted with ERα.”
Quote in the paperNot a substantial claim - Findingown data
No interaction was observed between the SRC-3 RID and AR.
“However, no interaction was observed between the RID and AR (Figure 4C).”
Quote in the paperSubstantial claim - Findingown data
The density map of the ARE DNA-bound AR/SRC-3/p300 complex has observed dimensions of approximately 150 × 180 × 220 Å.
“we resolved a density map of the ARE DNA-bound AR/SRC-3/p300 complex, which has observed dimensions of ~150 × 180 × 220 Å (Figure 3A).”
Quote in the paperNot a substantial claim - Findingown data
Addition of p300 and SRC-3 significantly boosted transcriptional activation.
“The addition of p300 and SRC-3 significantly boosted transcriptional activation, confirming that the assembled complex was functionally active.”
Quote in the paperSubstantial claim - Findingown data
The presence of SRC-3, even at the lowest concentration tested, consistently increased AR-p300 interaction.
“We found that the presence of SRC-3 (even with the lowest concentration tested) consistently increased AR-p300 interaction (Figure 4F).”
Quote in the paperSubstantial claim - Findingown data
Deletion of the bHLH/PAS and S/T region (SRC-3 Δ1+2) greatly abolished the interaction between SRC-3 and AR in co-IP.
“Consistent with these data, the deletion of the bHLH/PAS and S/T region (SRC-3 Δ1+2) greatly abolished the interaction between SRC-3 and AR in our co-IP experiment (Figure 4B).”
Quote in the paperSubstantial claim - Findingown data
R1881 dramatically enhanced wild-type SRC-3 recruitment to AR.
“As shown in Figure 4B, R1881 dramatically enhanced WT SRC-3 recruitment to AR.”
Quote in the paperNot a substantial claim - Findingown data
The AR dimer does not show a pseudo 2-fold axis, unlike the previously observed ERα dimer.
“Interestingly, we did not observe a pseudo 2-fold axis for this dimer, unlike the one previously observed for the ERα dimer (Yi et al., 2015).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Findingown data
Two Fab densities were observed for AR-Ab1, indicating the positions of two NTDs in the AR dimer.
“Two Fab densities were observed in the map (Figure 2A and Supplemental Figure 2B, 2C), indicating the positions of two NTDs in the AR dimer.”
Quote in the paperSubstantial claim - Findingown data
Different conformations of SRC-3 and p300 were observed in the two nuclear receptor complexes.
“Indeed, we observed different conformations of SRC-3 and p300 in the two NR complexes (Supplemental Figure 5A–5C).”
Quote in the paperSubstantial claim - Findingown data
Mutation of the LXXLL motifs did not affect the interaction between AR and SRC-3.
“However, mutation of the LXXLL motifs did not affect the interaction between AR and SRC-3.”
Quote in the paperSubstantial claim - Findingown data
The structure of DNA-bound AR dimers was solved at approximately 13 Å resolution.
“These data produced a structure of the complex at ~13 Å resolution (Figure 1A and Supplemental Figure 1D, 1E).”
Quote in the paperSubstantial claim - Findingown data
The 600-920aa AR mutant lost interaction with SRC-3.
“In contrast, the 600–920aa mutant has lost this interaction, suggesting that the NTD, but not the LBD, is important for the AR interaction with SRC-3.”
Quote in the paperSubstantial claim - Findingreasoning
Only one AR-Ab2 density was found.
“Interestingly, only one AR-Ab2 density was found (Figure 2B and Supplemental Figure 2D, 2E).”
Quote in the paperSubstantial claim - Findingown data
The DBD is observed binding to a DNA-like feature.
“The DBD is observed binding to a DNA-like feature (Figure 1B).”
Quote in the paperSubstantial claim - Findingown data
AR-Ab2 labeled AR docking into AR/coactivator complex images shows SRC-3 binding site adjacent to AR-Ab2 recognized region (FXXLF motif adjacent region).
“Our AR-Ab2 labeled AR docking into AR/coactivator complex images (Supplemental Figure 5E) reveal that the SRC-3 binding site is right next to AR-Ab2 recognized region (i.e. FXXLF motif adjacent region)”
Quote in the paperSubstantial claim - Findingown data
Only one SRC-3 molecule was found in the ARE-DNA/AR/coactivator complex.
“Only one SRC-3 molecule was found in the ARE-DNA/AR/coactivator complex (Supplemental Figure 3G, 3H, Ab labeling).”
Quote in the paperSubstantial claim - Findingown data
No interaction between SRC-3 and full-length AR was observed in the absence of androgen.
“Interestingly, no SRC-3 and full-length AR interaction was observed in the absence of androgen (Figure 4B), even though SRC-3 only interacts with the AR NTD.”
Quote in the paperSubstantial claim - Findingnone given
The AR dimer is not an anti-parallel dimer.
“However, the dimer does not exist as an anti-parallel dimer.”
Quote in the paperSubstantial claim - Findingreasoning
NTD-b recruits SRC-3.
“The NTD-b recruits SRC-3.”
Quote in the paperSubstantial claim - Findingreasoning
Labeling efficiency of NTD-a is much lower than NTD-b.
“The labeling efficiency of NTD-a is much lower than NTD-b”
Quote in the paperSubstantial claim - Findingown data
The two AR NTDs adopt different conformations.
“However, we did observe that the two NTDs adopt different conformations”
Quote in the paperNot a substantial claim - Findingown data
The AR dimer does not exist as an anti-parallel dimer.
“However, the dimer does not exist as an anti-parallel dimer.”
Quote in the paperSubstantial claim - Findingown data
The two NTD Fabs do not have equal density in the antibody-labeled ARE-DNA/AR map.
“We also noticed that the two NTD Fabs do not have equal density in the antibody-labeled ARE-DNA/AR density map (Figures 2A and Supplemental Figures 2B, 2C).”
Quote in the paperSubstantial claim - Findingcitation
The AR dimer structure differs from the ERα tail-to-tail dimer.
“It also is different from the ERα tail-to-tail dimer, which has a NTD located at one side of the LBD distant from the other NTD located at the opposite side (Yi et al., 2015).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Findingown data
The ARE-DNA/AR density map shows AR NTDs.
“Our ARE-DNA/AR density map clearly depicts the presence of AR NTDs (Figure 1B).”
Quote in the paperSubstantial claim - Findingown data
Adding an AR NTD-specific Fab did not significantly change the NTD density.
“Addition of an AR NTD-specific Fab did not significantly alter the NTD density (Supplemental Figure 2B and 2D)”
Quote in the paperSubstantial claim - Findingown data
The agonist-bound full-length ARE-DNA/AR structure reveals that two LBDs and DBDs are located in the center of the dimer while the two NTDs wrap around the LBDs to make close contacts with each other.
“Our agonist-bound full-length ARE-DNA/AR structure now reveals that two LBDs and DBDs are located in the center of the dimer while the two NTDs wrap around the LBDs to make close contacts with each other.”
Quote in the paperSubstantial claim - Interpretationown data
SRC-3 can stabilize the interaction between p300 and AR.
“These results suggest that SRC-3 can stabilize the interaction between p300 and AR.”
Quote in the paperSubstantial claim - Study design and conductnone given
The assembled ARE DNA-bound AR/SRC-3/p300 complex was functionally active in a cell-free transcription assay.
“The addition of p300 and SRC-3 significantly boosted transcriptional activation, confirming that the assembled complex was functionally active.”
Quote in the paperNot a substantial claim - Premisecitation
The N/C interaction is considered necessary for full AR transcriptional activity.
“This N/C interaction is considered necessary for full AR transcriptional activity (He et al., 2000; He et al., 2002; Li et al., 2006).”
Quote in the paperSubstantial claim0 of 3 sources checked- cites He et al., 2000
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites He et al., 2002
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Li et al., 2006
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisecitation
The AR AF-2 coactivator binding groove has low affinity for the LXXLL motif in SRCs.
“The coactivator binding groove in the AF-2 domain of AR has a low binding affinity for the LXXLL motif present in SRCs (He et al., 1999).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites He et al., 1999
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisecitation
A strong N/C interaction between the NTD FXXLF motif and the LBD coactivator binding groove is a unique feature of AR.
“A strong amino terminal – carboxyl terminal (N/C) interaction between the NTD FXXLF motif and the coactivator binding groove of the LBD is reported to be a unique feature of AR.”
Quote in the paperSubstantial claim - Premisecitation
The AR AF-2 groove preferentially binds the FXXLF motif in the AR NTD.
“Instead, it preferentially binds to a FXXLF motif existing in the AR NTD (Dubbink et al., 2006; Dubbink et al., 2004; He et al., 2004).”
Quote in the paperSubstantial claim0 of 3 sources checked - Study design and conductown data
The volume ratio of the segmented components is consistent with the ratio of the corresponding domain residues (NTD:DBD:LBD = 537:88:251).
“The volume ratio of the segmented components is consistent with the ratio of corresponding domain residues (NTD:DBD:LBD is 537:88:251).”
Quote in the paperNot a substantial claim - Premisenone given
Structural information on the AR NTD AF-1 is still lacking.
“Structural information on the largest and strongest activation domain (the NTD AF-1) of AR is still lacking.”
Quote in the paperSubstantial claim - Interpretationown data
The AR NTD appears to play a major role in recruiting both SRC-3 and p300.
“Thus, the NTD of AR appears to play a major role in recruiting both SRC-3 and p300.”
Quote in the paperSubstantial claim - Interpretationown data
The domain interaction mechanism between SRC-3 and AR is quite different from its interaction with ERα.
“These results suggest that the domain interaction mechanism between SRC-3 and AR is quite different from its interaction with ERα.”
Quote in the paperSubstantial claim - Interpretationown data
The AR NTD mediates the interaction with SRC-3.
“Indeed, we found that the same three domains that interact with AR WT also have strong associations with ARV7 (Figure 4C), confirming that the AR NTD mediates the interaction with SRC-3.”
Quote in the paperSubstantial claim - Study design and conductown data
Fab-labeled AR density maps are consistent with the map without Fab labeling except for additional Fab densities.
“As shown in Supplemental Figure 2B–2D, the Fab labeled AR density maps are consistent with the map without Fab labeling (Figure 1A and Supplemental Figure 2A) except for the additional densities representing Fabs.”
Quote in the paperSubstantial claim - Interpretationown data
The study provides a complete visualization of the three-dimensional domain organization of full-length AR and its contributions to coactivator recruitment.
“Our studies here provide a complete visualization of the three-dimensional domain organization of full-length AR and its contributions to coactivator recruitment.”
Quote in the paperSubstantial claim - Interpretationown data
The AR NTD is important for interaction with p300.
“We observed that full-length and 1–669aa fragments, but not the 600–920aa fragment, of AR interacts with p300 (Figure 4D), confirming that the AR NTD is important for interaction with p300.”
Quote in the paperSubstantial claim - Interpretationown data
SRC-3 does not utilize the same surfaces to contact AR and ERα.
“Nevertheless, these results clearly suggest that SRC-3 does not utilize the same surfaces to contact the two steroid hormone receptors.”
Quote in the paperSubstantial claim - Interpretationown data
The non-symmetric feature of the ARE-DNA/AR dimer and the single Ab2 recognition indicate that the two AR N/C interactions are not identical.
“The non-symmetric feature in the ARE-DNA/AR dimer and the fact that Ab2 only recognizes one NTD in the structure indicate that two AR N/C interactions are not identical in the complex.”
Quote in the paperSubstantial claim - Study design and conductown data
The singular SRC-3 binding is validated by observing only a single SRC-3-Ab bound to the complex.
“The singular binding is validated by observing only a single SRC-3-Ab bound to the complex (Supplemental Figure 3G, 3H).”
Quote in the paperSubstantial claim - Interpretationown data
The AR NTD plays an essential role in coactivator recruitment.
“Our studies now provide a structural basis for understanding AR transcriptional activation functions and demonstrate that the AR NTD plays an essential role in coactivator recruitment.”
Quote in the paperSubstantial claim - Study design and conductown data
The asymmetry is supported by differences in the density of the two bound antibodies, with one exhibiting much stronger binding to the dimer.
“This asymmetry also is supported by observed differences in the density of the two bound antibodies, with one exhibiting much stronger binding to the dimer (Figure 2A, Supplemental Figure 2B, 2C).”
Quote in the paperNot a substantial claim - Study design and conductown data
The DBD and the DNA-like feature fit well with the AR DBD crystal structure (PDB ID: 1r4i) and a similar-length DNA structure.
“Both the DBD and the DNA-like feature fit well with the AR DBD crystal structure (PDB ID: 1r4i) and a similar-length DNA structure (Supplemental Figure 2G, 2H).”
Quote in the paperSubstantial claim - Premisecitation
Two SRC-3 molecules interact with the coactivator binding groove on each LBD monomer.
“Two SRC-3 molecules interact with the coactivator binding groove located on each of the LBD monomers (Yi et al., 2015).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisecitation
The AR LBD interacts weakly with LXXLL motif-containing coactivators such as SRCs.
“the AR LBD interacts weakly with LXXLL motif-containing coactivators, such as SRCs, (Brzozowski et al., 1997; Dubbink et al., 2006; He et al., 2004; He et al., 1999; Matias et al., 2000; Nadal et al., 2017).”
Quote in the paperSubstantial claim0 of 3 sources checked - Interpretationown data
This differential interaction mechanism may contribute to p300 inhibitor sensitivity in prostate cancer.
“This differential interaction mechanism may be one of the factors contributing to p300 inhibitor sensitivity in prostate cancer.”
Quote in the paperSubstantial claim - Interpretationown data
This substantiates importance of N/C interaction-induced NTD conformational change in coactivator recruitment.
“further substantiating the importance of N/C interaction-induced NTD conformational change in coactivator recruitment.”
Quote in the paperSubstantial claim - Interpretationreasoning
Disrupting allosteric regulation of NTD structure conveyed from LBD through N/C interaction could be an important mechanism for antiandrogens to inhibit coactivator recruitment.
“Disrupting allosteric regulation of the NTD structure conveyed from LBD through the N/C interaction could be one important mechanism for antiandrogens to inhibit coactivator recruitment.”
Quote in the paperSubstantial claim - Interpretationown data
The AR NTD has plasticity to adapt to different conformations, likely depending on its binding partners.
“indicating a plasticity of the NTD to adapt to different conformations likely contingent upon its binding partners.”
Quote in the paperSubstantial claim - Interpretationown data
Differences between AR and ERα NTD structures contribute to their different interactions with coactivators.
“Our AR/coactivator complex structure demonstrates that the difference between the AR and ERα NTD structures is also an important factor contributing to the difference between the two receptors in their interaction with coactivators.”
Quote in the paperSubstantial claim - Interpretationown data
Steric hindrance from direct p300-AR NTD interaction could be another reason preventing recruitment of a second SRC-3.
“Steric hindrance from direct interaction between p300 and AR NTDs could be another reason to prevent recruitment of a second SRC-3 molecule to the complex (Supplemental Figure 4C).”
Quote in the paperNot a substantial claim - Interpretationreasoning
NTD-a may not be optimal for interaction with SRC-3.
“The NTD-a, which appears to adopt a more extended conformation and apparently mediates both intra- and inter-molecular N/C interactions, might not to be optimal for interaction with SRC-3.”
Quote in the paperSubstantial claim - Interpretationreasoning
This can explain why AR has strong AF-1 and weak AF-2 function.
“This could explain why AR has a strong AF-1 function while having a weak AF-2 function.”
Quote in the paperSubstantial claim- Rests on an assumption: The AR LBD has weak transcriptional activation function.
- Premisecitation
The AR LBD prefers binding to the FXXLF sequence in the NTD, unlike the ERα LBD.
“It prefers binding to the FXXLF sequence present in the NTD in contrast to what was seen with the ERα LBD (Dubbink et al., 2006; He et al., 2004; Hsu et al., 2003; Hur et al., 2004).”
Quote in the paperSubstantial claim0 of 3 sources checked - Interpretationown data
All of these domains contribute to the dimerization interface.
“All of these domains contribute to the dimerization interface.”
Quote in the paperSubstantial claim - Interpretationreasoning
AR's unique N/C interaction features enable an uncommon tail-to-tail and head-to-head dimer formation.
“Instead, the unique N/C interaction features of AR facilitate an uncommon tail-to-tail and head-to-head dimer formation.”
Quote in the paperSubstantial claim - Interpretationreasoning
Androgen-induced N/C interaction likely positions NTD in an optimal conformation for SRC-3 interaction.
“It is likely that androgen-induced N/C interaction positions the NTD in an optimal conformation for interacting with SRC-3.”
Quote in the paperSubstantial claim - Interpretationown data
These data support that different NTD conformations lead to different coactivator recruitment to each NTD.
“These data further support the notion that different NTD conformations lead to different coactivator recruitments to each individual NTD.”
Quote in the paperSubstantial claim - Interpretationown data
The Fab recognition epitope is partially buried in NTD-a due to a conformational change relative to NTD-b.
“suggesting that the Fab recognition epitope is partially buried in NTD-a due to a conformational change as compared to NTD-b.”
Quote in the paperSubstantial claim - Interpretationreasoning
The presence of only one SRC-3 is likely due to different conformations of the two NTDs.
“This finding is likely the result of different conformations of the two NTDs.”
Quote in the paperSubstantial claim - Study design and conductown data
Segmented component volumes match the expected mass ratios of their corresponding domains.
“The ratio between each segmented component volume is consistent with the ratio of corresponding domain masses.”
Quote in the paperNot a substantial claim
- May combine two claims. 49
- Classified as probably not a substantial claim. 20
May combine two claims.
PremisecitationAR mutants lacking AF-2 or splicing variants lacking the LBD still have potent transcription activation.
“AF-2 deletion mutants of AR or AR splicing variants lacking LBD still possess potent transcription activation functions (Guo et al., 2009; Jenster et al., 1995; Jenster et al., 1991; Simental et al., 1991).”
Quote in the paperSubstantial claim2 of 3 sources checked- cites Guo et al., 2009 source
- cites Jenster et al., 1995 source
- cites Jenster et al., 1991 source
In “Domains Required for Transcriptional Activation” (page unavailable), the paper reports that an AR mutant lacking the complete steroid-binding domain activated transcription at approximately the level of hormone-bound wild-type AR. It studied engineered deletion mutants, not AR splice variants, and does not specifically identify an AF-2 deletion. Those distinctions are not supported by this source. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationThe AR LBD and DBD X-ray crystal structures have been solved separately.
“The LBD and DBD X-ray crystal structures of AR have been solved separately (Matias et al., 2000; Sack et al., 2001; Shaffer et al., 2004).”
Quote in the paperSubstantial claim2 of 3 sources checkedMay combine two claims.
InterpretationcitationAR AF-1 is responsible for p300 recruitment because the majority of the AR-Ab1 binding region is AF-1 (amino acids 142-485).
“This suggests that AR AF-1 is responsible for p300 recruitment since majority of AR-Ab1 binding region is the AF-1 (aa 142–485) (McEwan, 2004).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites McEwan, 2004 source
The Transcriptional activation section defines AR AF-1 as amino acids 142–485. The Protein-protein interactions section reports that AR acetylation enhances p300 binding, but it does not identify an AR-Ab1 binding region or establish that AF-1 is responsible for p300 recruitment. Page numbers are unavailable in our copy. (LLM, conf=0.83)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAn androgen-induced inter-molecular N/C interaction was observed, supporting an anti-parallel dimerization model.
“On the other hand, an androgen-induced inter-molecular N/C interaction was observed, supporting an anti-parallel dimerization model (Langley et al., 1998; Langley et al., 1995; van Royen et al., 2012).”
Quote in the paperNot a substantial claim1 of 3 sources checkedMay combine two claims.
FindingcitationThe LBD-DBD domain arrangement is similar to the HNF4α dimer and different from the non-symmetric PPARγ-RXRα dimer or the X-shape LBD-DBD crossing arrangement in the RXRα-LXRβ dimer.
“This LBD-DBD domain arrangement is similar to the HNF4α dimer that was solved by X-ray crystallography (Chandra et al., 2013), which is different from the non-symmetric PPARγ-RXRα dimer (Chandra et al., 2008) or the X-shape LBD-DBD crossing arrangement in RXRα-LXRβ dimer (Lou et al., 2014).”
Quote in the paperSubstantial claim2 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe AR DBD forms a head-to-head dimer on DNA.
“On one hand, the AR DBD forms a head-to-head dimer on DNA (Shaffer et al., 2004).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Shaffer et al., 2004 source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationA symmetric dimeric AR LBD structure was solved recently, suggesting that AR may form a dimer similar to the way ERα dimerizes.
“A symmetric dimeric AR LBD structure was also solved recently (Nadal et al., 2017), suggesting that AR may form a dimer similar to the way ERα dimerizes.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Nadal et al., 2017 source
The Results section reports a symmetrical AR-LBD core dimer, supporting the structural finding. But the Discussion distinguishes its H5-mediated interface from the canonical ER-subclass dimerization mode, so the proposed similarity in how they dimerize is not supported. Page numbers are unavailable in our copy. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationThe AR NTD contains intrinsically disordered regions, and the isolated NTD exists as a collapsed disordered or molten globule-like structure that is intermediate between a folded globule and an unfolded random coil.
“Biochemical and computational analyses suggest that the AR NTD contains intrinsically disordered regions and the isolated NTD exists as a “collapsed” disordered or molten globule-like structure, which represents an intermediate state between a folded globule structure and an unfolded random-coil structure (Lavery and McEwan, 2008b; Reid et al., 2002).”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites Lavery and McEwan, 2008b
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Reid et al., 2002 source
The Discussion (page not provided) describes the studied AR transactivation region as partially unfolded, with regions of secondary structure; the Results also find limited secondary and tertiary structure in the isolated fragment. The paper does not characterize the whole isolated NTD as a collapsed disordered or molten globule-like structure, or explicitly place it between a folded globule and a random coil. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim. May combine two claims.
PremisecitationP300 inhibitor directly inhibits AR transcriptional activity and H3K27ac deposition at ARE site.
“P300 inhibitor directly inhibits AR transcriptional activity and H3K27ac deposition at the ARE site (Lasko et al., 2017).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Lasko et al., 2017 source
The paper reports that A-485 attenuated AR-dependent gene expression and reduced H3K27Ac at the androgen response element of the PSA enhancer. It describes direct inhibition of AR transcriptional activity as a suggestion from the timing of those effects, rather than an established finding; the claim omits that uncertainty. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe AR NTD has very little homology with other NR NTDs.
“It also shares very little homology with other NR NTDs (Lavery and McEwan, 2005).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Lavery and McEwan, 2005 source
May combine two claims.
InterpretationcitationAntiandrogen-resistant AR mutations such as F876L likely cause LBD structural change and stabilize active NTD conformation, converting antiandrogen into agonist.
“On the other hand, antiandrogen-resistant AR mutations, such as an F876L mutation (Balbas et al., 2013), likely cause a LBD structural change, and consequently stabilize the active NTD conformation to convert an antiandrogen (e.g. enzalutamide) into an agonist.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Balbas et al., 2013 source
May combine two claims.
PremisecitationCoactivator binding partners stabilize the NTD structure and convert it into a protease-resistant conformation.
“Interaction of the NTD with its coactivator binding partners stabilizes the NTD structure and converts the NTD into a protease-resistant conformation (Kumar et al., 2004; Lavery and McEwan, 2008b; Reid et al., 2002).”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites Kumar et al., 2004 source
- cites Lavery and McEwan, 2008b
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Reid et al., 2002 source
The Discussion reports that binding of RAP74, a subunit of the general transcription factor TFIIF, promotes folding of the AR transactivation domain. The protein-interactions section reports that RAP74 binding makes the domain less susceptible to proteolysis. The paper tests this specific binding partner, not coactivator binding partners generally; page numbers are unavailable in our copy. (LLM, conf=0.86)
Experimental — accuracy not yet measured
May combine two claims.
FindingcitationThe NTDs surround the LBDs to make both intra- and inter-molecular N/C interactions.
“Consistent with previous reports (Langley et al., 1998; Langley et al., 1995; van Royen et al., 2012), the NTDs also surround the LBDs to make both intra- and inter-molecular N/C interactions.”
Quote in the paperSubstantial claim1 of 3 sources checked- cites Langley et al., 1998 source
- cites Langley et al., 1995 source
The Discussion supports an intermolecular interaction between the androgen-bound steroid-binding domain (LBD) and the NH2-terminal region (NTD). It says an intramolecular interaction cannot be ruled out, but does not establish one; nor does it show that the NTDs surround the LBDs. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites van Royen et al., 2012 source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationGain-of-function ERα LBD mutations are frequently found in metastatic endocrine-resistant breast cancers and recruit elevated SRC coactivators to EREs.
“The gain-of-function ERα LBD mutations are frequently found in metastatic endocrine-resistant breast cancers (Jeselsohn et al., 2014; Robinson et al., 2013; Spoerke et al., 2016; Toy et al., 2013; Zhang et al., 1997) and recruit elevated levels of the SRC coactivators to EREs (Gates et al., 2018).”
Quote in the paperNot a substantial claim3 of 3 sources checkedMay combine two claims.
FindingcitationThe SRC-3 RID pulls down ERα, consistent with previous reports.
“Consistent with previous reports (Ding et al., 1998; Heery et al., 1997), SRC-3 RID was found to pull-down ERα (Figure 4C).”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
Findingcitationp300 directly interacts with AR without bridging through SRC-3, unlike the interaction in ERα.
“Further, we find p300 directly interacts with AR, without bridging through SRC-3, which is completely unlike that for ERα (Yi et al., 2015).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
Findingown dataFull-length and 1-669aa AR fragments, but not the 600-920aa fragment, interact with p300.
“We observed that full-length and 1–669aa fragments, but not the 600–920aa fragment, of AR interacts with p300 (Figure 4D), confirming that the AR NTD is important for interaction with p300.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBoth NTDs connect to each other and contribute to AR dimerization, in addition to the LBD and DBD forming a tight dimerization interface at the center.
“In addition to LBD and DBD, which form a tight dimerization interface at the center, both NTDs also connect to each other to contribute to AR dimerization.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown datap300 largely contacts the NTDs of both AR monomers and a small area also touches both LBDs.
“p300 largely contacts the NTDs of both AR monomers (-a and -b in Figure 3C). A small area of p300 also touches both LBDs.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe resolved LBDs are located in the center of the AR dimer and sit on top of the DNA-bound DBDs.
“Our resolved LBDs are located in the center of the AR dimer and they sit on top of the DNA-bound DBDs (Figure 1B and Supplemental Figure 2G, 2H).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe AR-Ab2-labeled AR dimer docks into the AR/coactivator complex such that the antibody is located next to the SRC-3 binding site, indicating that the SRC-3-interacting region is close to the AR N-terminal FXXLF motif where N/C interaction occurs.
“We also docked the AR-Ab2-labeled AR dimer structure into the AR/coactivator complex (Figure 2B) and found that this antibody is located right next to SRC-3 binding site (Supplemental Figure 5D, 5E.), indicating that the region interacting with SRC-3 is close to AR N-terminal FXXLF motif, where N/C interaction occurs.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe bHLH/PAS, S/T, and HAT domains of SRC-3 each pulled down AR in vitro.
“Instead, the bHLH/PAS, S/T and HAT domains were each able to pull-down AR in vitro.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataERα does not directly recruit p300, whereas AR interacts with p300 mainly through two NTDs.
“Third, ERα does not directly recruit p300, while AR interacts with p300 mainly through two NTDs.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe paper's structural and protein-protein interaction studies indicate p300 directly interacts with AR, unlike its indirect interaction with ERα.
“Our structural and protein-protein interaction studies indicate that p300 directly interacts with AR in contrast to its indirect interaction with ERα.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataERα recruits two SRC-3 molecules, whereas AR recruits only one SRC-3 molecule.
“First, ERα recruits two SRC-3 molecules, while AR only recruits one SRC-3 molecule.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataSRC-3 interacts with ERα LBD mainly via LXXLL motifs, but with AR NTD mainly through N-terminal regions.
“Second, SRC-3 mainly interacts with the ERα LBD via its LXXLL motifs, while it interacts with AR NTD mainly through its N-terminal regions.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationAndrogen-bound AR has a strong AF-1 function and a relatively weak AF-2 function, unlike estrogen-bound estrogen receptor.
“Unlike estrogen-bound estrogen receptor, the androgen-bound AR has a strong AF-1 function and a relatively weak AF-2 function.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationLigand binding causes the steroid receptor LBD to change conformation and expose an AF-2 hydrophobic groove that binds the LXXLL motif of coactivators such as SRCs.
“Upon ligand binding, the steroid receptor LBD undergoes a conformational change and presents a hydrophobic groove (AF-2) at the surface to interact with a LXXLL motif present in coactivators such as steroid receptor coactivators (SRCs) (Heery et al., 1997).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Heery et al., 1997 source
Classified as probably not a substantial claim. May combine two claims.
Premisenone givenThe mechanism by which AR AF-1 dominates activation and how the N/C interaction contributes to coactivator recruitment and AR transcriptional activity is unclear.
“The underlying mechanism as to why the AF-1 of AR is its dominant activation domain and how its N/C interaction contributes to coactivator recruitment and AR transcriptional activity remains unclear.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenSRCs recruit additional coactivators, including p300/CBP histone acetyltransferases, to promote histone modification or chromatin remodeling and stimulate transcriptional initiation.
“SRCs, in turn, recruit other coactivators that are capable of promoting histone modifications or chromatin remodeling, such as the p300/CBP histone acetyltransferases, to stimulate transcriptional initiation.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.
Premisenone givenAll steroid hormone receptors form homodimers and bind palindromic DNA response elements upon ligand binding.
“All steroid hormone receptors form homodimers and bind to palindromic DNA response elements upon ligand binding.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationA strong N-terminal AF-1 function has been documented for AR, while a ligand-dependent AF-2 in the C-terminus is the major contributor to ERα activity.
“A strong N-terminal AF-1 function has been documented for AR, while a ligand-dependent AF-2 in the C-terminus is the major contributor to ERα activity (Jenster et al., 1995; Jenster et al., 1992; Kumar et al., 1987; Tora et al., 1989).”
Quote in the paperSubstantial claim0 of 3 sources checkedMay combine two claims.
InterpretationcitationThe coactivator assembly mechanism is different from ERα-mediated coactivator recruitment and implies that AR-recruited SRC-3 and p300 may have different conformations from ERα-recruited coactivators.
“This coactivator assembly mechanism is different from ERα-mediated coactivator recruitment (Yi et al., 2015) and implies that AR-recruited SRC-3 and p300 may have different conformations from ERα-recruited coactivators.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
InterpretationcitationAR and ERα belong to the same steroid hormone receptor family and have similar domain organizations but utilize activation domains differently to initiate transcription.
“Although AR and ERα belong to the same steroid hormone receptor family and have similar domain organizations, they utilize activation domains differently to initiate transcription.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe 3-D structure of full-length AR and its complex with SRC-3 and p300 elucidate differences between AR and ERα coactivator complex assembly and highlight the structural mechanism and importance of the AR NTD in transcription activation.
“The 3-D structure of full-length AR, as well as its complex structure with the two key coactivators presented here, elucidate the underlying differences between AR and ERα coactivator complex assembly and highlight the structural mechanism and importance of the AR NTD in transcription activation.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe full-length ERα dimer forms a symmetric tail-to-tail dimer in the ERα/SRC-3/p300 complex, consistent with the palindromic DNA binding sequence and symmetric X-ray crystal structures of the ERα LBD and DBD dimers.
“We previously found that the full-length ERα dimer forms a symmetric tail-to-tail dimer in the ERα/SRC-3/p300 complex (Yi et al., 2015), consistent with the nature of palindromic DNA binding sequence, symmetric X-ray crystal structures of the ERα LBD (Brzozowski et al., 1997) and DBD dimers (Schwabe et al., 1993).”
Quote in the paperNot a substantial claim0 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataThe starting map was generated from scratch, and the overall structure was validated by subtomogram averaging from a different region of the same grid.
“The starting map of the refinement was generated from scratch and the overall structure was validated using subtomogram averaging performed in a different region of the same grid (Supplemental Figure 1F).”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
PremisereasoningThe precise structural role of AR interdomain interactions in full-length receptor dimerization and coactivator recruitment for transcription initiation remains elusive.
“The precise structural role of AR interdomain interactions in the context of full-length receptor dimerization and coactivator recruitment for regulating transcription initiation remains elusive.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe two NTDs within the AR dimer display different modes of N/C interactions and adopt different conformations to form unique interaction surfaces for recruiting SRC-3 and p300, respectively.
“The two NTDs within the AR dimer display different modes of N/C interactions, and consequently adopt different conformations to form unique interaction surfaces for recruiting SRC-3 and p300 coactivators, respectively (Supplemental Figure 4C).”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe NTD not recognized by Ab2 overlaps more with the LBDs and is less exposed, suggesting it is more engaged in inter- and intra-molecular N/C interactions than the other NTD.
“The NTD not recognized by Ab2 shows more overlap with other segmented domains (the two LBDs) and has less exposed areas in the density, suggesting that it may be more engaged in both inter- and intra-molecular N/C interactions compared to the other NTD.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataUpon androgen binding, AR dimerizes and undergoes both intra- and inter-molecular N/C interactions.
“Upon androgen binding, AR dimerizes and undergoes both intra- and inter-molecular N/C interactions.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe NTD, but not the LBD, is important for AR interaction with SRC-3.
“In contrast, the 600–920aa mutant has lost this interaction, suggesting that the NTD, but not the LBD, is important for the AR interaction with SRC-3.”
Quote in the paperSubstantial claimMay combine two claims.
Study design and conductown dataThe volume ratio between each component agrees with the ratio of their molecular weights, further validating the segmentation.
“The volume ratio between each component is in agreement with the ratio of their molecular weights, further validating the segmentation.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe mode of AR dimer formation is controversial.
“The mode of AR dimer formation, however, is controversial.”
Quote in the paperNot a substantial claimMay combine two claims.
Study design and conductown dataThe two antibody-bound density maps are consistent with the ARE-DNA/AR/SRC-3/p300 density map with an obvious protruding density, indicating the locations of specific targeting components.
“The two antibody-bound density maps are consistent with the ARE-DNA/AR/SRC-3/p300 density map with an obvious protruding density, which indicates the location of specific targeting components in the complex.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationcitationThe structural data agree with prior reports that AR NTD has strong activation function and that many coactivators including SRCs and CBP/p300 can be recruited through AR NTD.
“Our structural data is consistent with previous reports that the AR NTD has a strong activation function and that many coactivators, including SRCs and CBP/p300, can be recruited through its AR NTD (Alen et al., 1999; Jenster et al., 1995; Jenster et al., 1992; Lavery and McEwan, 2008a; Quayle et al., 2007).”
Quote in the paperNot a substantial claim0 of 3 sources checkedMay combine two claims.
Interpretationown dataIn the full-length receptor, AR NTDs are less disordered and likely stabilized by interaction with LBDs.
“suggesting that the NTDs in the context of full-length receptor are less disordered and likely stabilized by its interaction with the LBDs.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataError bars show the standard error of the mean.
“Statistical test used in this study was the Student’s t test using Excel. The n number is three independent experiments with duplicates in each experiment. The error bar represents standard error of the mean (SEM). p<0.05 was considered statistically significant.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn the ERα tail-to-tail dimer, one NTD is on one side of the LBD and the other NTD is on the opposite side.
“It also is different from the ERα tail-to-tail dimer, which has a NTD located at one side of the LBD distant from the other NTD located at the opposite side (Yi et al., 2015).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
Interpretationown dataThe structural studies highlight AR NTD importance in coactivator recruitment and provide mechanistic insights into differences between ERα and AR mutations in breast and prostate cancer.
“Our structural studies presented here highlight the importance of the AR NTD in AR coactivator recruitment and provide mechanistic insights for observed differences between ERα and AR mutations in breast and prostate cancer.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningWithout androgen or with AR antagonist, AR NTDs may adopt different conformations and have lower binding affinities for coactivators in full-length receptor.
“Without androgen stimulation or with AR antagonist treatment, AR NTDs may adopt different conformations and therefore have lower binding affinities with coactivators in the context of full-length receptor.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown dataThe study used Student's t test and considered p<0.05 significant.
“Statistical test used in this study was the Student’s t test using Excel. The n number is three independent experiments with duplicates in each experiment. The error bar represents standard error of the mean (SEM). p<0.05 was considered statistically significant.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationPreclinical studies show p300 inhibitor efficacy in patient-derived prostate tumor explants and castration-resistant prostate cancer growth.
“Preclinical studies of a p300 inhibitor also reveal efficacy in patient-derived prostate tumor explants (Butler et al., 2019) and the growth of castration-resistant prostate cancer (Jin et al., 2017).”
Quote in the paperSubstantial claim0 of 2 sources checkedMay combine two claims.
Interpretationown dataNTD-a appears to adopt a more extended conformation and apparently mediates both intra- and inter-molecular N/C interactions.
“The NTD-a, which appears to adopt a more extended conformation and apparently mediates both intra- and inter-molecular N/C interactions, might not to be optimal for interaction with SRC-3.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationComponent ratios were checked against molecular weight ratios from earlier ER structures.
“The ratio between each component was validated by the molecular weight ratio as described in the previous ER structures (Yi et al., 2017; Yi et al., 2015).”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites Yi et al., 2017
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Yi et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
Interpretationown dataThe relatively large AR NTDs wrap around LBDs and block SRC-3 access to LBD.
“The relatively large-sized AR NTDs, however, wrap around the LBDs, blocking the access of SRC-3 to the LBD.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningThrough this interaction, the AR NTD covers most LBD surfaces and limits LBD accessibility to coactivators.
“Through this interaction the AR NTD covers most of LBD surfaces to limit the accessibility of LBD to coactivators.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThree independent experiments, each with duplicates, provided the sample size.
“Statistical test used in this study was the Student’s t test using Excel. The n number is three independent experiments with duplicates in each experiment. The error bar represents standard error of the mean (SEM). p<0.05 was considered statistically significant.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningConsequently, SRC-3 is recruited solely by AR NTD, and p300 recruitment is stabilized by contact with two AR NTDs.
“Consequently, SRC-3 is solely recruited by the AR NTD, and p300 recruitment is stabilized by contacting two AR NTDs.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe AR NTD is less conserved across vertebrate species than other AR domains.
“The AR NTD is conserved less across different vertebrate species compared to other domains (van de Wijngaart et al., 2012).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites van de Wijngaart et al., 2012 source
The authors state this as an assumption.
Full-length AR dimerizes in a manner similar to the truncated LBD crystal structure used for docking.
“while it is uncertain whether full length AR dimerizes in a similar way to the truncated one in the crystal (Nadal et al., 2017), this density does dock into our structure in a location and orientation consistent with our Fab labeling results”
The paper relies on this without support.
The Fab antibodies specifically recognize their intended AR epitopes without altering the AR complex structure.
“AR-Ab1 recognizes the AF-1 domain (McEwan, 2004) and thus was used to label the NTD region.”
“AR-Ab2 recognizes the region adjacent to the FXXLF motif (amino acids 23–27) at the very N-terminus of AR.”
The paper relies on this without support.
The AR LBD has weak transcriptional activation function.
“It is recognized that the AR LBD has a weak transcriptional activation function.”
The paper relies on this without support.
The FXXLF motif-mediated N/C interaction is not observed in other steroid receptors.
“This unique FXXLF motif-mediated N/C interaction is not observed in other steroid receptors.”
The paper relies on this without support.
AR NTD is substantially longer than ER NTD.
“The AR NTD (540–560 amino acids) is substantially longer than ER NTD (180 amino acids).”
The paper relies on this without support.
AR mutants with intact NTD but lacking LBD remain very active.
“However, AR mutants containing an intact NTD (such as LBD-deletions or splicing variants lacking the LBD) are still very active.”
The paper relies on this without support.
The mechanism of tumor-selective sensitivity to p300 inhibition is unclear.
“The underlying mechanism for tumor selective sensitivity to p300 inhibition is not yet clear.”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Coactivator-complex antibody identity differs between Results and Methods
MinorThe Results identify AR-Ab1 as the antibody used to locate AR in the coactivator-bound complex, but the cryo-EM preparation Methods list AR-Ab2 for that complex.
“including previously known structures of individual components (SRC-3 and p300) (Yi et al., 2017; Yi et al., 2015) and sub-complexes (ARE-DNA/AR) (Figure 1), as well as two additional antibody bound structures (AR-Ab1 and SRC-3-Ab, respectively) (Supplemental Figure 3E–3G).”
“grids of the ARE-DNA/AR sample with AR-Ab1 or AR-Ab2 and ARE-DNA/AR/SRC-3/p300 sample with AR-Ab2 or SRC-3-Ab were prepared.”
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Allosteric communications between domains of nuclear receptors
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AR-regulated ZIC5 contributes to the aggressiveness of prostate cancer
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Self-citationERG-Mediated Coregulator Complex Formation Maintains Androgen Receptor Signaling in Prostate Cancer
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Isoform-specific Activities of Androgen Receptor and its Splice Variants in Prostate Cancer Cells
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Self-citationDNA binding alters ARv7 dimer interactions
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Current and emerging approaches to noncompetitive AR inhibition
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Mild Androgen Insensitivity Syndrome: The Current Landscape
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Homing in on a Moving Target: Androgen Receptor Cistromic Plasticity in Prostate Cancer
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Conformational Changes of RORγ During Response Element Recognition and Coregulator Engagement
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- Authors
- Yu, X., Yi, P., Hamilton, R. A., Shen, H., Chen, M., Foulds, C. E., Mancini, M. A., Ludtke, S. J., Wang, Z., & O’Malley, B. W.
- Affiliations
- Baylor College of Medicine (US)
- Corresponding author
- Wang, Zhao
- O’Malley, Bert W.
- ORCID
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2020-09
- Volume
- 79
- Issue
- 5
- Pages
- 812-823.e4
- ISSN
- 1097-2765 (ISSN-L)
- PMC
- PMC7483370
- OpenAlex
- W3042507822
- Cited by
- 154
- References
- 71
- Citations by year
- 2026: 12 · 2025: 23 · 2024: 27 · 2023: 28 · 2022: 39 · 2021: 20 · 2020: 5
- FWCI
- 12.93
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Digital Commons-TMC (Texas Medical Center) (submittedVersion)
- Funders
- National Institute of Diabetes and Digestive and Kidney Diseases
- Welch Foundation
- National Cancer Institute
- Congressionally Directed Medical Research Programs
- National Institute of General Medical Sciences
- Cancer Prevention and Research Institute of Texas
- National Institute of Child Health and Human Development
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Prostate Cancer Treatment and Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Estrogen and related hormone effects
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- androgen receptor, coactivator complexes, SRC-3, P300, receptor dimerization, head-to-head dimerization, coactivator recruitment, N-terminal domain
- MeSH terms
- DNA, Humans, Nucleic Acid Conformation, Protein Conformation, Receptors, Androgen, Recombinant Proteins, Cryoelectron Microscopy, E1A-Associated p300 Protein, Nuclear Receptor Coactivator 3, HEK293 Cells
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