The Chromatin Landscape of Cellular Senescence
Open accessAbstract
Cellular senescence, an irreversible growth arrest triggered by a variety of stressors, plays important roles in normal physiology and tumor suppression, but accumulation of senescent cells with age contributes to the functional decline of tissues. Senescent cells undergo dramatic alterations to their chromatin landscape that affect genome accessibility and their transcriptional program. These include the loss of DNA-nuclear lamina interactions, the distension of centromeres, and changes in chromatin composition that can lead to the activation of retrotransposons. Here we discuss these findings, as well as recent advances in microscopy and genomics that have revealed the importance of the higher-order spatial organization of the genome in defining and maintaining the senescent state.
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Replicative senescence shows loss of long-range and gain of short-range interactions within chromosomes, implying that senescence-associated high-order chromatin interactions are stimulus and context dependent.
“Replicative senescence, on the other hand, showed loss of long-range and gain of short-range interactions within chromosomes (Criscione et al., 2016), implying that the nature of senescence-associated high-order chromatin interactions is stimulus and context dependent (Zirkel et al., 2018).”
From Cellular Senescence: Defining a Path Forward (2019) · cites this paper as Criscione et al., 2016
The Changes in chromosome organization section reports a genome-wide increase in short-range contacts in replicatively senescent cells. It does not report a corresponding loss of long-range within-chromosome interactions in those cells. The sentence attributes its broader stimulus-and-context inference to Zirkel et al., not to this source. (LLM, conf=0.85)
Experimental — accuracy not yet measuredLINE-1 elements fuel the SASP in addition to triggering genomic instability.
“Therefore, in addition to triggering genomic instability, these elements fuel the SASP (Criscione et al., 2016).”
From Cellular Senescence: Defining a Path Forward (2019) · cites this paper as Criscione et al., 2016
The section on chromatin structure says activated retrotransposons can propagate genomic instability through insertional mutagenesis. The Concluding remarks also link retrotransposition to new DNA damage, but attribute SASP gene activation to super-enhancer remodeling; they do not say LINE-1 elements fuel the SASP. Page numbers were not available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measuredPericentromeric regions are highly enriched for lamin-B1-positive regions in human fibroblasts, suggesting hSATII loci might be tethered to the nuclear membrane to prevent expansion and transcription.
“Pericentromeric regions are highly enriched for lamin-B1-positive regions in human fibroblasts (43), suggesting that the hSATII loci might be tethered to the nuclear membrane to prevent its expansion and transcription (44).”
From Chromatin conformational changes at human satellite II contribute to the senescence phenotype in the tumor microenvironment (2023) · cites this paper as [44]
The section on loss of DNA association with the nuclear envelope says the lamina interacts with heterochromatic domains and that loss of lamina components detaches those domains. The section on transcriptional changes says pericentric HSATII distends and becomes accessible in senescent cells. Neither passage establishes that pericentromeric regions are highly enriched for lamin-B1-positive regions in human fibroblasts or proposes that membrane tethering prevents HSATII expansion and transcription. (LLM, conf=0.78)
Experimental — accuracy not yet measured
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BackgroundLamin B1 fluctuations have differential effects on cellular proliferation and senescence
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Cellular Senescence: Defining a Path Forward
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Immune Aging and Immunotherapy in Cancer
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- Authors
- Criscione, S. W., Teo, Y. V., & Neretti, N.
- Affiliations
- Brown University (US)
- Corresponding author
- Neretti, Nicola
- Venue
- Trends in Genetics
- Publisher
- Elsevier BV
- Published
- 2016-11
- Volume
- 32
- Issue
- 11
- Pages
- 751-761
- ISSN
- 0168-9525 (ISSN-L)
- PMC
- PMC5235059
- OpenAlex
- W2526226937
- Cited by
- 137
- References
- 104
- Citations by year
- 2026: 6 · 2025: 18 · 2024: 13 · 2023: 21 · 2022: 9 · 2021: 18 · 2020: 15 · 2019: 16 · 2018: 14 · 2017: 7
- FWCI
- 1.45
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Trends in Genetics (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute on Aging (F31AG050365, R56AG050582)
- National Institute of General Medical Sciences (T32GM007601, P20GM109035)
- Topics
- Health Sciences › Medicine › Physiology › Telomeres, Telomerase, and Senescence
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Keywords
- cellular senescence, chromatin landscape, retrotransposon activation, genome accessibility, transcriptional programs, 3D genome organization, senescence-associated heterochromatin foci, aging, tumor suppression
- MeSH terms
- Centromere, Chromatin, DNA, Heterochromatin, Histones, Humans, Transcription, Genetic, Cellular Senescence, Genomics, Nuclear Lamina
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