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PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings

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Yang, Samuel, Rothman, Richard E·2004·The Lancet Infectious Diseases

Abstract

Summary Molecular diagnostics are revolutionising the clinical practice of infectious disease. Their effects will be significant in acute-care settings where timely and accurate diagnostic tools are critical for patient treatment decisions and outcomes. PCR is the most well-developed molecular technique up to now, and has a wide range of already fulfilled, and potential, clinical applications, including specific or broad-spectrum pathogen detection, evaluation of emerging novel infections, surveillance, early detection of biothreat agents, and antimicrobial resistance profiling. PCR-based methods may also be cost effective relative to traditional testing procedures. Further advancement of technology is needed to improve automation, optimise detection sensitivity and specificity, and expand the capacity to detect multiple targets simultaneously (multiplexing). This review provides an up-to-date look at the general principles, diagnostic value, and limitations of the most current PCR-based platforms as they evolve from bench to bedside.

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Research works printed but not linked: 145

  1. 1990, Increase in national hospital discharge survey rates for septicemia—United States, MMWR Morb Mortal Wkly Rep, 39, 31
  2. Sands, 1997, Epidemiology of sepsis syndrome in 8 academic medical centers, JAMA, 278, 234, 10.1001/jama.1997.03550030074038 · DOI · Paper page
  3. Pavlin, 2002, Diagnostic analyses of biological agent-caused syndromes: laboratory and technical assistance, Emerg Med Clin North Am, 20, 331, 10.1016/S0733-8627(01)00004-9 · DOI
  4. Klietmann, 2001, Bioterrorism: Implications for the Clinical Microbiologist, Clin Micro Rev, 14, 364, 10.1128/CMR.14.2.364-381.2001 · doi:10.1128/cmr.14.2.364-381.2001
  5. Gerberding, 2003, Faster…but fast enough? Responding to the epidemic of severe acute respiratory syndrome, N Engl J Med, 348, 2030, 10.1056/NEJMe030067 · DOI
  6. Jungkind, 2001, Tech.Sight. Molecular testing for infectious disease, Science, 294, 1553, 10.1126/science.294.5546.1553 · doi:10.1126/science.294.5546.1553
  7. Marantz, 1987, Inability to predict diagnosis in febrile intravenous drug abusers, Ann Int Med, 106, 823828, 10.7326/0003-4819-106-6-823 · DOI
  8. Samet, 1990, Hospitalization decision in febrile intravenous drug users, Am J Med, 89, 5356, 10.1016/0002-9343(90)90098-X · DOI
  9. Cosgrove, 2003, The impact of antimicrobial resistance on health and economic outcomes, Clin Infect Dis, 36, 1433, 10.1086/375081 · DOI · Paper page
  10. Pitt, 2000, Molecular bacteriology: a diagnostic tool for the millennium, J Clin Pathol, 53, 71, 10.1136/jcp.53.1.71 · DOI
  11. Ehrlich, 1991, Recent advances in the polymerase chain reaction, Science, 252, 1643, 10.1126/science.2047872 · DOI · Paper page
  12. Naber, 1994, Molecular pathology—diagnosis of infectious disease, N Engl J Med, 331, 1212, 10.1056/NEJM199411033311808 · doi:10.1056/nejm199411033311808
  13. Santis, 1999, Molecular biology for the critical care physician, Crit Care Med, 27, 997, 10.1097/00003246-199905000-00043 · DOI
  14. Drake, 1987, Rapid identification of Mycobacterium avium complex in culture using DNA probes, J Clin Microbiol, 25, 1442, 10.1128/jcm.25.8.1442-1445.1987 · DOI
  15. Musial, 1988, Identification of mycobacteria from culture by using the Gen-Probe rapid diagnostic system for Mycobacterium avium complex and Mycobacterium tuberculosis complex, J Clin Microbiol, 26, 2120, 10.1128/jcm.26.10.2120-2123.1988 · DOI · Paper page
  16. Lewis, 1993, Direct DNA probe assay for Neisseria gonorrhoeae in pharyngeal and rectal specimens, J Clin Microbiol, 31, 27838, 10.1128/jcm.31.10.2783-2785.1993 · doi:10.1128/jcm.31.10.2783-2785.1993
  17. Moseley, 1980, Detection of enterotoxigenic Escherichia coli by DNA colony hybridization, J Infect Dis, 142, 892, 10.1093/infdis/142.6.892 · DOI · Paper page
  18. Engleberg, 1992, Detection of microbial nucleic acids for diagnostic purposes, Annu Rev Med, 43, 147, 10.1146/annurev.me.43.020192.001051 · DOI
  19. Tang, 1997, Molecular diagnositics of infectious diseases, Clin Chem, 43, 2021, 10.1093/clinchem/43.11.2021 · DOI · Paper page
  20. Wolk, 2001, Principles of molecular microbiology testing methods, Inf Dis Clin of North Am, 15, 1157, 10.1016/S0891-5520(05)70190-2 · DOI
  21. Mullis, 1987, Specific synthesis of DNA in vitro via a polymerase-catalyzed reaction, Methods Enzymol, 155, 335, 10.1016/0076-6879(87)55023-6 · DOI · Paper page
  22. Mullis, 1990, The unusual origin of the polymerase chain reaction, Sci Am, 262, 56, 10.1038/scientificamerican0490-56 · DOI · Paper page
  23. Eisenstein, 1990, The polymerase chain reaction: a new method of using molecular genetics for medical diagnosis, N Engl J Med, 332, 178
  24. White, 1992, The polymerase chain reaction: clinical applications, Adv Clin Chem, 29, 161, 10.1016/S0065-2423(08)60224-3 · DOI
  25. Persing, 1993, Diagnostic molecular microbiology: current challenges and future directions, Diagn Microbiol Infect Dis, 16, 159, 10.1016/0732-8893(93)90015-Y · DOI
  26. Chamberlain, 1988, Detection screening of Duchenne muscular dystrophy locus via multiplex DNA amplification, Nucleic Acids Res, 16, 11141, 10.1093/nar/16.23.11141 · DOI · Paper page
  27. Erlich, 1991, Recent advances in the polymerase chain reaction, Science, 252, 1643, 10.1126/science.2047872 · DOI · Paper page
  28. Power, 1996, RAPD typing in microbiology—a technical review, J Hosp Infect, 34, 247, 10.1016/S0195-6701(96)90106-1 · DOI · Paper page
  29. Higuchi, 1992, Simultaneous amplification and detection of specific DNA sequences, Biotechnology, 10, 413, 10.1038/nbt0492-413 · DOI · Paper page
  30. Heid, 1996, Real time quantitative PCR, Genome Res, 6, 986, 10.1101/gr.6.10.986 · DOI · Paper page
  31. Chen, 1997, Fluorescence energy transfer detection as a homogeneous DNA diagnostic method, Proc Natl Acad Sci USA, 94, 10756, 10.1073/pnas.94.20.10756 · DOI
  32. Tyagi, 1996, Molecular beacons: probes that fluoresce upon hybridization, Nat Biotechnol, 14, 303, 10.1038/nbt0396-303 · DOI · Paper page
  33. Post, 2000, The impact of the polymerase chain reaction in clinical medicine, JAMA, 283, 1544, 10.1001/jama.283.12.1544 · DOI
  34. Louie, 2000, The role of DNA amplification technology in the diagnosis of infectious disease, CMAJ, 163, 301
  35. Black, 2002, Head-to-head multicenter comparison of DNA probe and nucleic acid amplification tests for Chlamydia trachomatis infection in women performed with an improved reference standard, J Clin Microbiol, 40, 3757, 10.1128/JCM.40.10.3757-3763.2002 · DOI
  36. Van Dyck, 2001, Detection of Chlamydia trachomatis and Neisseria gonorrhoeae by enzyme immunoassay, culture, and three nucleic acid amplification tests, J Clin Microbiol, 39, 1751, 10.1128/JCM.39.5.1751-1756.2001 · doi:10.1128/jcm.39.5.1751-1756.2001
  37. Girdner, 1999, Evaluation of the digene hybrid capture II CT-ID test for detection of Chlamydia trachomatis in endocervical specimens, J Clin Microbiol, 37, 1579, 10.1128/JCM.37.5.1579-1581.1999 · doi:10.1128/jcm.37.5.1579-1581.1999
  38. Witt, 2000, Analytical performance and clinical utility of a nucleic acid sequence-based amplification assay for detection of cytomegalovirus infection, J. Clin Microbiol, 38, 3994, 10.1128/JCM.38.11.3994-3999.2000 · doi:10.1128/jcm.38.11.3994-3999.2000
  39. Mazzulli, 1999, Multicenter comparison of the digene hybrid capture CMV DNA assay (version 2.0), the pp65 antigenemia assay, and cell culture for detection of cytomegalovirus viremia, J Clin Microbiol, 37, 958, 10.1128/JCM.37.4.958-963.1999 · doi:10.1128/jcm.37.4.958-963.1999
  40. Briselden, 1994, Evaluation of Affirm VP microbial identification test for Gardnerella vaginalis and, Trichomonas vaginalis. J Clin Microbiol, 32, 148, 10.1128/jcm.32.1.148-152.1994 · DOI
  41. Hendricks, 2003, Multicenter evaluation of the VERSANT HCV RNA qualitative assay for detection of hepatitis C virus RNA, J Clin Microbiol, 41, 651, 10.1128/JCM.41.2.651-656.2003 · doi:10.1128/jcm.41.2.651-656.2003
  42. Trimoulet, 2002, Evaluation of the VERSANT HCV RNA 3.0 assay for quantification of hepatitis C virus RNA in serum, J Clin Microbiol, 40, 2031, 10.1128/JCM.40.6.2031-2036.2002 · DOI
  43. Vargo, 2002, Clinical specificity and sensitivity of a blood screening assay for detection of HIV-1 and HCV RNA, Transfusion, 42, 876, 10.1046/j.1537-2995.2002.00130.x · doi:10.1046/j.1537-2995.2002.00130.x
  44. Gleaves, 2002, Multicenter evaluation of the Bayer VERSANT HIV-1 RNA 3.0 assay: analytical and clinical performance, J Clin Virol, 25, 205, 10.1016/S1386-6532(02)00011-2 · DOI
  45. Clavel, 2001, Human papillomavirus testing in primary screening for the detection of high-grade cervical lesions: a study of 7932 women, Br J Cancer, 84, 161623, 10.1054/bjoc.2001.1845 · DOI · Paper page
  46. Schachter, 1999, Ability of the digene hybrid capture II test to identify Chlamydia trachomatis and Neisseria gonorrhoeae in cervical specimens, J Clin Microbiol, 37, 3668, 10.1128/JCM.37.11.3668-3671.1999 · doi:10.1128/jcm.37.11.3668-3671.1999
  47. Altwegg, 1997, Will cultures survive? The role of molecular tests in diagnostic bacteriology, Infection, 25, 265, 10.1007/BF01720394 · doi:10.1007/bf01720394
  48. Black, 1997, Current methods of laboratory diagnosis of chlamydia trachomatis infections, Clin Micro Rev, 10, 160, 10.1128/CMR.10.1.160 · DOI · Paper page
  49. Chernesky, 1994, Diagnosis of Chlamydia trachomatis infections in men and women by testing first-void urine by ligase chain reaction, J Clin Microbiol, 32, 2682, 10.1128/jcm.32.11.2682-2685.1994 · doi:10.1128/jcm.32.11.2682-2685.1994
  50. Chernesky, 1986, Detection of Chlamydia trachomatis antigens by enzyme immunoassay and immunofluorescence in genital specimens from symptomatic and asymptomatic men and women, J Infect Dis, 154, 141, 10.1093/infdis/154.1.141 · doi:10.1093/infdis/154.1.141
  51. Croft, 1998, Expenditure and loss of income incurred by tuberculosis patients before reaching effective treatment in Bangladesh, Int J Tuberc Lung Dis, 2, 252
  52. Muir, 1998, Molecular typing of enteroviruses: current status and future requirements, Clin Micro Rev, 11, 202, 10.1128/CMR.11.1.202 · DOI · Paper page
  53. Carroll, 2000, Evaluation of the roche AMPLICOR enterovirus PCR assay in the diagnosis of enteroviral central nervous system infections, J Clin Virol, 19, 149, 10.1016/S1386-6532(00)00115-3 · DOI
  54. D'Amato, 1995, Rapid diagnosis of pulmonary tuberculosis by using Roche AMPLIOR Mycobacterium tuberculosis PCR test, J Clin Microbiol, 33, 1832, 10.1128/jcm.33.7.1832-1834.1995 · DOI · Paper page
  55. Piersimoni, 1997, Comparative evaluation of two commercial amplification assays for direct detection of Mycobacterium tuberculosis complex in respiratory specimens, J Clin Microbiol, 35, 193, 10.1128/jcm.35.1.193-196.1997 · DOI
  56. Woods, 2001, Clinical evaluation of the Gen-Probe amplified Mycobacterium tuberculosis direct test for rapid detection of Mycobacterium tuberculosis in select nonrespiratory specimens, J Clin Microbiol, 39, 747, 10.1128/JCM.39.2.747-749.2001 · doi:10.1128/jcm.39.2.747-749.2001
  57. Bergmann, 1999, Clinical evaluation of the enhanced Gen-Probe amplified Mycobacterium Tuberculosis direct test for rapid diagnosis of tuberculosis in prison inmates, J Clin Microbiol, 37, 1419, 10.1128/JCM.37.5.1419-1425.1999 · DOI
  58. Black, 1997, Current methods of laboratory diagnosis of Chlamydia trachmatis infections, Clin Microbiol Rev, 10, 160, 10.1128/CMR.10.1.160 · DOI · Paper page
  59. Mehta, 2000, Unsuspected gonorrhea and chlamydia in patients of an urban adult emergency department, STD, 28, 3339
  60. Mehta, 2001, Clinical aspects of diagnosis of gonorrhea and chlamydia infection in an acute care setting, CID, 32, 655, 10.1086/318711 · DOI
  61. Ogborn, 1995, Hospitalization vs. outpatient treatment of young febrile infants. 10-year comparison, Arch Pediatr Adol Med, 149, 94, 10.1001/archpedi.1995.02170130096023 · doi:10.1001/archpedi.1995.02170130096023
  62. Dumler, 1999, Molecular diagnostics for existing and emerging infectious, Am J Clin Pathol, 112, S33
  63. Rotbart, 1990, Diagnosis of enteroviral meningitis with the polymerase chain reaction, J Pediatr, 117, 85, 10.1016/S0022-3476(05)82451-5 · DOI
  64. Smalling, 2002, Molecular approaches to detecting herpes simplex virus and enteroviruses in the central nervous system, J Clin Microbiol, 40, 2317, 10.1128/JCM.40.7.2317-2322.2002 · DOI
  65. Stellrecht, 2002, The impact of an enteroviral RT-PCR assay on the diagnosis of aseptic meningitis and patient management, J Clin Virol, 25, S19, 10.1016/S1386-6532(02)00030-6 · DOI
  66. Mackay, 2002, Real-time PCR in virology, Nucleic Acids Res, 30, 1292, 10.1093/nar/30.6.1292 · DOI · Paper page
  67. Kelley, 2001, Successful testing protocols in virology, Clin Chem, 47, 1559, 10.1093/clinchem/47.8.1559 · DOI
  68. Wilson, 1990, Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction, J Clin Microbiol, 323, 1573
  69. Chen, 1989, Broad range DNA probes for detecting and amplifying eubacterial nucleic acids, FEMS Microbiol Lett, 57, 19, 10.1111/j.1574-6968.1989.tb03213.x · doi:10.1111/j.1574-6968.1989.tb03213.x
  70. Greigen, 1994, PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid, J Clin. Microbiol, 32, 335, 10.1128/jcm.32.2.335-351.1994 · DOI · Paper page
  71. Evertsson, 2000, Detection and identification of fungi in blood using broad-range 28S rDNA PCR amplification and species-specific hybridisation, APMIS, 108, 385, 10.1034/j.1600-0463.2000.d01-73.x · doi:10.1034/j.1600-0463.2000.d01-73.x
  72. Hryniewiecki, 2002, Development of broad-range polymerase chain reaction (PCR) bacterial identification in diagnosis of infective endocarditis, J Heart Valve Dis, 11, 870
  73. Rothman, 2002, Detection of bacteremia in emergency department patients at risk for infective endocarditis using universal 16S rRNA primers in a decontaminated polymerase chain reaction assay, J Infect Dis, 186, 1677, 10.1086/345367 · DOI
  74. McCabe, 1995, Amplification of bacterial DNA using highly conserved sequences: automated analysis and potential molecular triage of sepsis, Pediatrics, 95, 165
  75. Lisby, 2002, Molecular methods for diagnosis of infective endocarditis, Infect Dis Clin North Am, 16, 393, 10.1016/S0891-5520(01)00002-2 · DOI
  76. Ley, 1998, Detection of bacteremia in patients with fever and neutropenia using 16S rRNA gene amplification by PCR, Eur J Clin Microbiol Infect Dis, 17, 247, 10.1007/BF01699981 · DOI
  77. Kane, 1997, The detection of microbial DNA in the blood: A sensitive method for the detection of bacteremia and/or bacterial translocation in surgical patients, Ann Surg, 227, 1, 10.1097/00000658-199801000-00001 · DOI
  78. Relman, 1992, Identification of the uncultured bacillus of Whipple's Disease, N Engl J Med, 327, 293, 10.1056/NEJM199207303270501 · DOI · Paper page
  79. Leinonen, 1999, Interaction of Chlamydia pneumoniae infection with other risk factors of atherosclerosis, Am Heart J, 135, S504, 10.1016/S0002-8703(99)70286-3 · DOI
  80. Peiris, 2003, Coronavirus as a possible cause of severe acute respiratory syndrome, Lancet, 361, 1319, 10.1016/S0140-6736(03)13077-2 · DOI · Paper page
  81. Poon, 2004, Rapid diagnosis of a coronavirus associated with severe acute respiratory syndrome (SARS), Clin Chem, 49, 953, 10.1373/49.6.953 · DOI
  82. 2003, Outbreak of severe acute respiratory syndrome—worldwide, MMWR Morb Mortal Wkly Rep, 52, 226
  83. Chambers, 2001, Methicillin resistance in staphylococci: molecular and biochemical basis and clinical implications, Clin Microbiol Rev, 14, 836
  84. Tenover, 1999, Methods for improved detection of oxacillin resistance in coagulase-negative staphylococci: results of a multicenter study, J Clin Microbiol, 37, 4051, 10.1128/JCM.37.12.4051-4058.1999 · doi:10.1128/jcm.37.12.4051-4058.1999
  85. Telenti, 1997, Genotypic assessment of isoniazid and rifampin resistance in Mycobacterium tuberculosis: a blind study at reference laboratory level, J Clin Microbiol, 35, 719, 10.1128/jcm.35.3.719-723.1997 · DOI · Paper page
  86. De Beenhouwer, 1995, Rapid detection of rifampicin resistance in sputum and biopsy specimens from tuberculosis patients by PCR and line probe assay, Tubercle Lung Dis, 76, 425, 10.1016/0962-8479(95)90009-8 · DOI · Paper page
  87. Marttila, 1999, Line probe assay in the rapid detection of rifampin-resistant Mycobacterium tuberculosis directly from clinical specimens, Scand J Infect Dis, 31, 269, 10.1080/00365549950163563 · DOI
  88. Petrik, 2001, Microarray technology: the future of blood testing?, Vox Sanguinis, 80, 1, 10.1046/j.1423-0410.2001.00010.x · DOI
  89. DeGruttola, 2000, The relation between baseline HIV drug resistance and response to antiretroviral therapy: reanalysis of retrospective and prospective studies using a standardized data analysis plan, Antivir Ther, 5, 41, 10.1177/135965350000500112 · DOI · Paper page
  90. Demeter, 2001, Phenotypic and genotypic resistance assays: methodology, reliability, and interpretations, J Acquir Immune Defic Syndr, 26, S3, 10.1097/00042560-200103011-00002 · doi:10.1097/00042560-200103011-00002
  91. Hanna, 2001, Clinical use of genotypic and phenotypic drug resistance testing to monitor antiretroviral chemotherapy, Clin Infect Dis, 32, 774, 10.1086/319231 · doi:10.1086/319231
  92. Pavlin, 2002, Diagnostic analyses of biological agent-causes syndromes: laboratory and technical assistance, Emerg Med Clin North Am, 20, 331, 10.1016/S0733-8627(01)00004-9 · DOI
  93. Bell, 2002, Detection of Bacillus anthracis DNA by LightCycler PCR, J Clin Microbiol, 40, 2897, 10.1128/JCM.40.8.2897-2902.2002 · doi:10.1128/jcm.40.8.2897-2902.2002
  94. Espy, 2002, Detection of vaccinia virus, herpes simplex virus, varicella-zoster virus, and Bacillus anthracis DNA by LightCycler polymerase chain reaction after autoclaving: implications for biosafety of bioterrorism agents, Mayo Clin Proc, 77, 624, 10.4065/77.7.624 · doi:10.4065/77.7.624
  95. Radnedge, 2001, Identification of nucleotide sequences for the specific and rapid detection of, Yersinia pestis. Appl Environ Microbiol, 67, 3759, 10.1128/AEM.67.8.3759-3762.2001 · DOI
  96. Ropp, 1995, PCR strategy for identification and differnentiation of small pox and other orthopoxviruses, J Clin Microbiol, 33, 2069, 10.1128/jcm.33.8.2069-2076.1995 · DOI
  97. Louie, 2000, The role of DNA amplification technology in the diagnosis of infectious diseases, CMAJ, 163, 301
  98. Livengood CH, 2001, Evaluation of COBAS AMPLICOR (Roche): accuracy in detection of Chlamydia trachomatis and Neisseria gonorrhoeae by coamplification of endocervical specimens, J Clin Microbiol, 39, 2928, 10.1128/JCM.39.8.2928-2932.2001 · doi:10.1128/jcm.39.8.2928-2932.2001
  99. Haberland, 2002, Perinatal screening for group B streptococci: cost-benefit analysis of rapid polymerase chain reaction, Pediatrics, 110, 471, 10.1542/peds.110.3.471 · doi:10.1542/peds.110.3.471
  100. Fredricks DN and Relman, 2000, Application of polymerase chain reaction to the diagnosis of infectious diseases, Clin Infect Dis, 29, 475, 10.1086/598618 · DOI · Paper page
  101. Longo, 1990, Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions, Gene, 93, 125, 10.1016/0378-1119(90)90145-H · DOI · Paper page
  102. Carroll, 1999, Elimination of bacterial DNA from Taq DNA polymerases by restriction endonuclease digestion, J Clin Microbiol, 37, 3402, 10.1128/JCM.37.10.3402-3404.1999 · DOI
  103. Corless, 2000, Contamination and sensitivity issues with a real-time universal 16S rRNA PCR, J Clin Microbiol, 38, 1747, 10.1128/JCM.38.5.1747-1752.2000 · DOI · Paper page
  104. Yang, 2002, Quantitative multiprobe PCR assay for the simultaneous detection and species identification of bacterial pathogens, J Clin Microbiol, 40, 3449, 10.1128/JCM.40.9.3449-3454.2002 · DOI · Paper page
  105. Burke, 1997, Microfabrication technologies for integrated nucleic acid analysis, Genome Res, 7, 189, 10.1101/gr.7.3.189 · DOI
  106. Mangiapan, 1996, Sequence capture-PCR improves detection of mycobacterial DNA in clinical specimens, J Clin Microbiol, 34, 1209, 10.1128/jcm.34.5.1209-1215.1996 · DOI
  107. Reiss, 1999, Quality control PCR: a method for detecting inhibitors of Taq DNA polymerase, Biotechniques, 27, 920, 10.2144/99275bm09 · doi:10.2144/99275bm09
  108. McAdam, 2000, Discrepant analysis: how can we test a test?, J Clin Microbiol, 38, 2027, 10.1128/JCM.38.6.2027-2029.2000 · DOI
  109. Lee, 1995, Diagnosis of Chlamydia trachomatis genitourinary infection in women by ligase chain reaction assay of urine, Lancet, 345, 213, 10.1016/S0140-6736(95)90221-X · DOI · Paper page
  110. Jaschek, 1993, Direct detection of Chlamydia trachomatis in urine specimens from symptomatic and asymptomatic men by using a rapid polymerase chain reaction assay, J Clin Microbiol, 31, 1209, 10.1128/jcm.31.5.1209-1212.1993 · doi:10.1128/jcm.31.5.1209-1212.1993
  111. Green, 1998, Evaluation of bias in diagnositic-test sensitivity and spceificity estimates computed by discrepant analysis, J Clin Microbiol, 36, 375, 10.1128/JCM.36.2.375-381.1998 · DOI
  112. Hadgu, 1999, Discrepant analysis: a biased and an unscientific method for estimating test sensitivity and specificity, J Clin Epidemiol, 52, 1231, 10.1016/S0895-4356(99)00101-8 · DOI
  113. Nikkari, 2001, Does blood of healthy subjects contain bacterial ribosomal DNA?, J Clin Microbiol, 39, 1956, 10.1128/JCM.39.5.1956-1959.2001 · DOI · Paper page
  114. Kennedy, 1994, Polymerase chain reaction for assessing treatment response in patients with pulmonary tuberculosis, J Infect Dis, 170, 713, 10.1093/infdis/170.3.713 · doi:10.1093/infdis/170.3.713
  115. Noordhoek, 1991, Detection by polymerase chain reaction of Treponema pallidum DNA in cerebrospinal fluid from neurosyphilis patients before and after antibiotic treatment, J Clin Microbiol, 29, 1976, 10.1128/jcm.29.9.1976-1984.1991 · DOI
  116. Mellors, 1995, Quantitation of HIV-1 RNA in plasma predicts outcome after seroconversion, Ann Intern Med, 122, 573, 10.7326/0003-4819-122-8-199504150-00003 · DOI · Paper page
  117. Ho, 1989, Quantification of human immunodeficiency virus type 1 in the blood of infected persons, N Engl J Med, 321, 1621, 10.1056/NEJM198912143212401 · DOI · Paper page
  118. Baker, 1991, Determination of hepatitis B virus DNA in serum using the polymerase chain reaction: clinical significance and correlation with clinical and biochemical markers, Hepatology, 13, 632, 10.1002/hep.1840130404 · doi:10.1002/hep.1840130404
  119. Berger, 1997, Quantification of viral load: clinical relevance for human immunodeficiency virus, hepatitis B virus, hepatitis C virus infection, Intervirology, 41, 24, 10.1159/000024912 · DOI
  120. Yamamoto, 1995, Detection and quantitation of virus DNA in plasma of patients with Epstein-Barr virus-associated diseases, J Clin Microbiol, 33, 1765, 10.1128/jcm.33.7.1765-1768.1995 · DOI
  121. Walsh, 1998, Viral kinetics can predict early response to alpha-interferon in chronic hepatitis C, Liver, 18, 191, 10.1111/j.1600-0676.1998.tb00149.x · doi:10.1111/j.1600-0676.1998.tb00149.x
  122. Hackett, 2002, Meningococcal bacterial DNA load at presentation correlates with disease severity, Arch Dis Child, 8, 44, 10.1136/adc.86.1.44 · DOI
  123. Alifano, 1994, Control of mRNA processing and decay in prokaryotes, Genetica, 94, 157, 10.1007/BF01443430 · doi:10.1007/bf01443430
  124. Birch, 2001, A comparison of nucleic acid amplification techniques for the assessment of bacterial viability, Lett Appl Microbiol, 33, 296, 10.1046/j.1472-765X.2001.00999.x · DOI
  125. Bej, 1996, Detection of viable Vibrio cholerae by reverse-transcriptase polymerase chain reaction (RT-PCR), Mol Biotechnol, 5, 1, 10.1007/BF02762407 · DOI
  126. Sheridan, 1998, Detection of mRNA by reverse transcription-PCR as an indicator of viability in Escherichia coli cells, Appl Environ Microbiol, 64, 1313, 10.1128/AEM.64.4.1313-1318.1998 · DOI · Paper page
  127. Jou, 1997, Single-tube, nested, reverse transcriptase PCR for detection of viable, Mycobacterium tuberculosis. J Clin Microbiol, 25, 1161, 10.1128/jcm.35.5.1161-1165.1997 · doi:10.1128/jcm.35.5.1161-1165.1997
  128. Hellyer, 1999, Quantitative analysis of mRNA as a marker for viability of, Mycobacterium tuberculosis. J Clin Microbiol, 35, 1161
  129. Patel, 1993, Determination of Mycobacterium leprae viability by polymerase chain reaction amplification of 71-kDa heat-shock protein mRNA, J Inf Dis, 168, 779, 10.1093/infdis/168.3.799 · doi:10.1093/infdis/168.3.799
  130. Versalovic, 1991, Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes, Nucleic Acids Res, 19, 6823, 10.1093/nar/19.24.6823 · DOI · Paper page
  131. Sharples, 1990, A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes, Nucleic Acids Res, 18, 6503, 10.1093/nar/18.22.6503 · DOI · Paper page
  132. Schouten, 2002, Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification, Nucleic Acids Res, 30, 57, 10.1093/nar/gnf056 · DOI · Paper page
  133. Baner, 2001, More keys to padlock probes: mechanisms for high-throughput nucleic acid analysis, Curr Opin Biotechnol, 12, 11, 10.1016/S0958-1669(00)00174-9 · doi:10.1016/s0958-1669(00)00174-9
  134. Corless, 2001, Simultaneous detection of Neisseria meningitides, Haemophilus influenzae, and Streptococcus pneumoniae in suspected cases of meningitis and septicemia using real-time PCR, J Clin Microbiol, 39, 1553, 10.1128/JCM.39.4.1553-1558.2001 · DOI · Paper page
  135. Ramsay, 1998, DNA chips: state-of-the-art, Nat Biotechnol, 16, 40, 10.1038/nbt0198-40 · DOI · Paper page
  136. Brown, 1999, Exploring the new world of the genome with DNA microarrays, Nat Genet, 21, 33, 10.1038/4462 · DOI · Paper page
  137. Westin, 2001, Antimicrobial resistance and bacterial identification utilizing a microelectronic chip array, J Clin Microbiol, 39, 1097, 10.1128/JCM.39.3.1097-1104.2001 · doi:10.1128/jcm.39.3.1097-1104.2001
  138. Stults, 1995, Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS), Curr Opin Struct Biol, 5, 691, 10.1016/0959-440X(95)80063-8 · DOI
  139. Cotter, 1992, Time-of-flight mass spectrometry for the structural analysis of biological molecules, Anal Chem, 64, 1027A, 10.1021/ac00045a726 · DOI
  140. Karas, 1998, Laser desorption ionization of proteins with molecular masses exceeding 10 000 daltons, Anal Chem, 60, 2299, 10.1021/ac00171a028 · DOI · Paper page
  141. Hurst, 1998, MALDI-TOF anaylsis of polymerase chain reaction products from methanotrophic bacteria, Anal Chem, 70, 2693, 10.1021/ac980044e · DOI
  142. Von Wintzingerode, 2002, Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification, PNAS, 99, 7039, 10.1073/pnas.102165899 · doi:10.1073/pnas.102165899
  143. Koomen, 2002, Accurate mass measurement of DNA oligonucleotide ions using high-resolution time-of-flight mass spectrometry, J Mass Spect, 37, 357, 10.1002/jms.312 · doi:10.1002/jms.312
  144. Emanuel, 2003, Detection of Francisella tularensis within infected mouse tissues by using a hand-held PCR thermocycler, J Clin Microbiol, 41, 689, 10.1128/JCM.41.2.689-693.2003 · doi:10.1128/jcm.41.2.689-693.2003
  145. Gutierres, 2004, Point-of-care testing: an introduction, Ann Pharmacother, 38, 119, 10.1345/aph.1D212 · DOI

Cited by

See all 1,112

Metadata

Authors
Yang, S., & Rothman, R. E.
Venue
The Lancet Infectious Diseases
Publisher
Elsevier BV
Published
2004-06
Volume
4
Issue
6
Pages
337-348
ISSN
1473-3099 (ISSN-L)
OpenAlex
W2167903799
Cited by
1,112
References
4
FWCI
12.92
Type
journal article
Language
en
Open access
bronze
Licence
  • www.elsevier.com/tdm/userlicense/1.0/ (tdm)
  • www.elsevier.com/legal/tdmrep-license (tdm)

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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

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This page
CoChat. (2026). Citation check: PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings. https://app.cochat.ai/papers/10.1016/s1473-3099(04)01044-8
The paper
Yang, S., & Rothman, R. E. (2004). PCR-based diagnostics for infectious diseases: uses, limitations, and future applications in acute-care settings. The Lancet Infectious Diseases. https://doi.org/10.1016/s1473-3099(04)01044-8

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.