The DOI matches its Crossref record; 31 of the 31 references it cites were found in a registry or an index.
Multiplexed Nanoflares: mRNA Detection in Live Cells
Open accessAbstract
We report the development of the multiplexed nanoflare, a nanoparticle agent that is capable of simultaneously detecting two distinct mRNA targets inside a living cell. These probes are spherical nucleic acid (SNA) gold nanoparticle (Au NP) conjugates consisting of densely packed and highly oriented oligonucleotide sequences, many of which are hybridized to a reporter with a distinct fluorophore label and each complementary to its corresponding mRNA target. When multiplexed nanoflares are exposed to their targets, they provide a sequence specific signal in both extra- and intracellular environments. Importantly, one of the targets can be used as an internal control, improving detection by accounting for cell-to-cell variations in nanoparticle uptake and background. Compared to single-component nanoflares, these structures allow one to determine more precisely relative mRNA levels in individual cells, improving cell sorting and quantification.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Molecular Beacons: Probes that Fluoresce upon Hybridization
Tyagi, S., & Kramer, F. R. (1996) · Nature Biotechnology · doi:10.1038/nbt0396-303 · Cited by 4,155
A novel anti-apoptosis gene, survivin, expressed in cancer and lymphoma
Ambrosini, G., Adida, C., & Altieri, D. C. (1997) · Nature Medicine · doi:10.1038/nm0897-917 · Cited by 3,165
Exploring the new world of the genome with DNA microarrays
Brown, P. O., & Botstein, D. (1999) · Nature Genetics · doi:10.1038/4462 · Cited by 2,414
Quantification of mRNA using real-time RT-PCR
Nolan, T., Hands, R. E., & Bustin, S. A. (2006) · Nature Protocols · doi:10.1038/nprot.2006.236 · Cited by 2,247
Imaging individual mRNA molecules using multiple singly labeled probes
Raj, A., van den Bogaard, P., Rifkin, S. A., van Oudenaarden, A., & Tyagi, S. (2008) · Nature Methods · doi:10.1038/nmeth.1253 · Cited by 2,028
Oligonucleotide-Modified Gold Nanoparticles for Intracellular Gene Regulation
Rosi, N. L., Giljohann, D. A., Thaxton, C. S., Lytton-Jean, A. K. R., Han, M. S., & Mirkin, C. A. (2006) · Science · doi:10.1126/science.1125559 · Cited by 1,988
Self-citationVisualization of Single RNA Transcripts in Situ
Femino, A. M., Fay, F. S., Fogarty, K., & Singer, R. H. (1998) · Science · doi:10.1126/science.280.5363.585 · Cited by 1,504
Visvader, J. E. (2011) · Nature · doi:10.1038/nature09781 · Cited by 1,449
Twenty-Five Years of Quantitative PCR for Gene Expression Analysis
VanGuilder, H. D., Vrana, K. E., & Freeman, W. M. (2008) · BioTechniques · doi:10.2144/000112776 · Cited by 1,246
Single-mismatch detection using gold-quenched fluorescent oligonucleotides
Dubertret, B., Calame, M., & Libchaber, A. J. (2001) · Nature Biotechnology · doi:10.1038/86762 · Cited by 1,239
Maximizing DNA Loading on a Range of Gold Nanoparticle Sizes
Hurst, S. J., Lytton-Jean, A. K. R., & Mirkin, C. A. (2006) · Analytical Chemistry · doi:10.1021/ac0613582 · Cited by 1,214
Self-citationSelf-Assembled Nanoparticle Probes for Recognition and Detection of Biomolecules
Maxwell, D. J., Taylor, J. R., & Nie, S. (2002) · Journal of the American Chemical Society · doi:10.1021/ja025814p · Cited by 890
Nano-Flares: Probes for Transfection and mRNA Detection in Living Cells
Seferos, D. S., Giljohann, D. A., Hill, H. D., Prigodich, A. E., & Mirkin, C. A. (2007) · Journal of the American Chemical Society · doi:10.1021/ja0776529 · Cited by 710
Self-citationOligonucleotide Loading Determines Cellular Uptake of DNA-Modified Gold Nanoparticles
Giljohann, D. A., Seferos, D. S., Patel, P. C., Millstone, J. E., Rosi, N. L., & Mirkin, C. A. (2007) · Nano Letters · doi:10.1021/nl072471q · Cited by 552
Self-citationPolyvalent DNA Nanoparticle Conjugates Stabilize Nucleic Acids
Seferos, D. S., Prigodich, A. E., Giljohann, D. A., Patel, P. C., & Mirkin, C. A. (2009) · Nano Letters · doi:10.1021/nl802958f · Cited by 551
Self-citationImaging intracellular RNA distribution and dynamics in living cells
Tyagi, S. (2009) · Nature Methods · doi:10.1038/nmeth.1321 · Cited by 400
Patel, P. C., Giljohann, D. A., Daniel, W. L., Zheng, D., Prigodich, A. E., & Mirkin, C. A. (2010) · Bioconjugate Chemistry · doi:10.1021/bc1002423 · Cited by 366
Self-citationNano-flares for mRNA Regulation and Detection
Prigodich, A. E., Seferos, D. S., Massich, M. D., Giljohann, D. A., Lane, B. C., & Mirkin, C. A. (2009) · ACS Nano · doi:10.1021/nn9003814 · Cited by 284
Self-citationScheule, R. K., George, J. A. S., Bagley, R. G., Marshall, J., Kaplan, J. M., Akita, G. Y., Wang, K. X., Lee, E. R., Harris, D. J., Jiang, C., et al. (1997) · Human Gene Therapy · doi:10.1089/hum.1997.8.6-689 · Cited by 251
Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells
Nitin, N. (2004) · Nucleic Acids Research · doi:10.1093/nar/gnh063 · Cited by 231
Locked Nucleic Acid Molecular Beacons
Wang, L., Yang, C. J., Medley, C. D., Benner, S. A., & Tan, W. (2005) · Journal of the American Chemical Society · doi:10.1021/ja052498g · Cited by 212
Implications of pharmacokinetic behavior of lipoplex for its inflammatory toxicity
ZHANG, J., LIU, F., & HUANG, L. (2005) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2004.12.004 · Cited by 195
Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells
Molenaar, C. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.17.e89 · Cited by 176
Peng, X.-H., Cao, Z.-H., Xia, J.-T., Carlson, G. W., Lewis, M. M., Wood, W. C., & Yang, L. (2005) · Cancer Research · doi:10.1158/0008-5472.can-04-3196 · Cited by 167
Regulating Immune Response Using Polyvalent Nucleic Acid−Gold Nanoparticle Conjugates
Massich, M. D., Giljohann, D. A., Seferos, D. S., Ludlow, L. E., Horvath, C. M., & Mirkin, C. A. (2009) · Molecular Pharmaceutics · doi:10.1021/mp900172m · Cited by 163
Self-citationCellular Response of Polyvalent Oligonucleotide−Gold Nanoparticle Conjugates
Massich, M. D., Giljohann, D. A., Schmucker, A. L., Patel, P. C., & Mirkin, C. A. (2010) · ACS Nano · doi:10.1021/nn102228s · Cited by 139
Self-citationNanostructured Probes for RNA Detection in Living Cells
Santangelo, P. J., Nitin, N., & Bao, G. (2006) · Annals of Biomedical Engineering · doi:10.1007/s10439-005-9003-6 · Cited by 138
Selective Enhancement of Nucleases by Polyvalent DNA-Functionalized Gold Nanoparticles
Prigodich, A. E., Alhasan, A. H., & Mirkin, C. A. (2011) · Journal of the American Chemical Society · doi:10.1021/ja110833r · Cited by 127
Self-citationTorres, V. A., Tapia, J. C., Rodríguez, D. A., Párraga, M., Lisboa, P., Montoya, M., Leyton, L., & Quest, A. F. G. (2006) · Journal of Cell Science · doi:10.1242/jcs.02894 · Cited by 114
Significant impact of survivin on myeloma cell growth
Romagnoli, M., Trichet, V., Chiron, D., Clément, M., Moreau, P., Bataille, R., & Barillé‐Nion, S. (2007) · Leukemia · doi:10.1038/sj.leu.2404602 · Cited by 64
Key Aspects of Analyzing Microarray Gene-Expression Data
Chen, J. J. (2007) · Pharmacogenomics · doi:10.2217/14622416.8.5.473 · Cited by 51
Cited by
An overview of nanoparticles commonly used in fluorescent bioimaging
Wolfbeis, O. S. (2015) · Chemical Society Reviews · doi:10.1039/c4cs00392f · Cited by 1,631
Ratiometric optical nanoprobes enable accurate molecular detection and imaging
Huang, X., Song, J., Yung, B. C., Huang, X., Xiong, Y., & Chen, X. (2018) · Chemical Society Reviews · doi:10.1039/c7cs00612h · Cited by 820
Strategies in the delivery of Cas9 ribonucleoprotein for CRISPR/Cas9 genome editing
Zhang, S., Shen, J., Li, D., & Cheng, Y. (2021) · Theranostics · doi:10.7150/thno.47007 · Cited by 430
Kelley, S. O., Mirkin, C. A., Walt, D. R., Ismagilov, R. F., Toner, M., & Sargent, E. H. (2014) · Nature Nanotechnology · doi:10.1038/nnano.2014.261 · Cited by 398
Self-citationRational Engineering of a Dynamic, Entropy‐Driven DNA Nanomachine for Intracellular MicroRNA Imaging
Liang, C., Ma, P., Liu, H., Guo, X., Yin, B., & Ye, B. (2017) · Angewandte Chemie International Edition · doi:10.1002/anie.201704147 · Cited by 389
Metadata
- Authors
- Prigodich, A. E., Randeria, P. S., Briley, W. E., Kim, N. J., Daniel, W. L., Giljohann, D. A., & Mirkin, C. A.
- Venue
- Analytical Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2012-01-30
- Volume
- 84
- Issue
- 4
- Pages
- 2062-2066
- ISSN
- 0003-2700 (ISSN-L)
- 1520-6882
- OpenAlex
- W2137158680
- Cited by
- 285
- References
- 31
- FWCI
- 10.92
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.