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Goliath family E3 ligases regulate the recycling endosome pathway via VAMP3 ubiquitylation

Yamazaki, Yasuo, Schönherr, Christina, Varshney, Gaurav K, Dogru, Murat, Hallberg, Bengt, Palmer, Ruth H·2013·The EMBO Journal

Abstract

Diverse cellular processes depend on endocytosis, intracellular vesicle trafficking, sorting and exocytosis, processes regulated post-transcriptionally by modifications such as phosphorylation and ubiquitylation. In addition to sorting to the lysosome, cargo is recycled to the plasma membrane via recycling endosomes. Here, we describe a role of the goliath gene family of protease-associated (PA) domain E3 ligases in regulating recycling endosome trafficking. The two Drosophila members of this family--Goliath and Godzilla(CG10277)--are located on endosomes, and both ectopic expression and loss-of-function lead to the accumulation of Rab5-positive giant endosomes. Furthermore, the human homologue RNF167 exhibits similar behaviour. We show that the soluble N-ethylmaleimide-sensitive fusion attachment protein receptor (SNARE) protein VAMP3 is a target of these ubiquitin ligases, and that recycling endosome trafficking is abrogated in response to their activity. Furthermore, mutation of the Godzilla ubiquitylation target lysines on VAMP3 abrogates the formation of enlarged endosomes induced by either Godzilla or RNF167. Thus, Goliath ubiquitin ligases play a novel role in regulating recycling endosome trafficking via ubiquitylation of the VAMP3 SNARE protein.

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Crossref · 10.1038/emboj.2013.1

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  • Ubiquitination events mediated by Drosophila Goliath family members regulate specific cellular events such as endocytosis and protein-protein interactions.

    “Ubiquitination events mediated by Drosophila Goliath family members have been shown to regulate specific cellular events such as endocytosis7,11 and protein-protein interactions12,13.”
  • Despite there being over 600 RING E3 ligases, only a small number, including RNF130, contain a bona fide transmembrane domain (TMD).

    “Despite there being over 600 RING E3 ligases6, only a small number, that includes RNF130, contain a bona fide transmembrane domain (TMD)7.”
  • This localization dictates target specificity and facilitates endocytic recycling of target proteins.

    “It was further shown that this localization dictates target specificity and facilitates endocytic recycling of target proteins.”
  • Previous studies of RNF167 and RNF13 have shown that these ligases are localized to both the plasma membrane and endosomes.

    “Previous studies of other PA-TM-RING ligase family members RNF167 and RNF13 have shown that these ligases are localized to both the plasma membrane and endosomes7.”
  • IDOL and GOLIATH are spatially separated within the cell, with IDOL localized to the plasma membrane and GOLIATH to the endosomal system.

    “It is noteworthy that IDOL and GOLIATH are spatially separated within the cell, with IDOL localized to the plasma membrane and GOLIATH to the endosomal system [65,81].”

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Research works printed but not linked: 51

  1. Artero R, Furlong EE, Beckett K, Scott MP, Baylies M (2003) Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis. Development 130: 6257–6272 · DOI
  2. Baker SJ, Reddy EP (2000) Cloning of murine G1RP, a novel gene related to Drosophila melanogaster g1. Gene 248: 33–40 · DOI
  3. Bhattacharya S, Stewart BA, Niemeyer BA, Burgess RW, McCabe BD, Lin P, Boulianne G, O'Kane CJ, Schwarz TL (2002) Members of the synaptobrevin/vesicle‐associated membrane protein (VAMP) family in Drosophila are functionally interchangeable in vivo for neurotransmitter release and cell viability. Proc Natl Acad Sci USA 99: 13867–13872 · DOI
  4. Borchers AG, Hufton AL, Eldridge AG, Jackson PK, Harland RM, Baker JC (2002) The E3 ubiquitin ligase GREUL1 anteriorizes ectoderm during Xenopus development. Dev Biol 251: 395–408 · DOI
  5. Bouchard ML, Cote S (1993) The Drosophila melanogaster developmental gene g1 encodes a variant zinc‐finger‐motif protein. Gene 125: 205–209 · DOI
  6. Chavrier P, Parton RG, Hauri HP, Simons K, Zerial M (1990) Localization of low molecular weight GTP binding proteins to exocytic and endocytic compartments. Cell 62: 317–329 · DOI · Paper page
  7. Chin AC, Burgess RW, Wong BR, Schwarz TL, Scheller RH (1993) Differential expression of transcripts from syb, a Drosophila melanogaster gene encoding VAMP (synaptobrevin) that is abundant in non‐neuronal cells. Gene 131: 175–181 · DOI
  8. Collinet C, Stoter M, Bradshaw CR, Samusik N, Rink JC, Kenski D, Habermann B, Buchholz F, Henschel R, Mueller MS, Nagel WE, Fava E, Kalaidzidis Y, Zerial M (2010) Systems survey of endocytosis by multiparametric image analysis. Nature 464: 243–249 · DOI
  9. DiAntonio A, Burgess RW, Chin AC, Deitcher DL, Scheller RH, Schwarz TL (1993) Identification and characterization of Drosophila genes for synaptic vesicle proteins. J Neurosci 13: 4924–4935 · DOI
  10. Dietzl G, Chen D, Schnorrer F, Su KC, Barinova Y, Fellner M, Gasser B, Kinsey K, Oppel S, Scheiblauer S, Couto A, Marra V, Keleman K, Dickson BJ (2007) A genome‐wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448: 151–156 · DOI · Paper page
  11. Finley KD, Edeen PT, Foss M, Gross E, Ghbeish N, Palmer RH, Taylor BJ, McKeown M (1998) Dissatisfaction encodes a tailless‐like nuclear receptor expressed in a subset of CNS neurons controlling Drosophila sexual behavior. Neuron 21: 1363–1374 · DOI
  12. Galli T, Chilcote T, Mundigl O, Binz T, Niemann H, De Camilli P (1994) Tetanus toxin‐mediated cleavage of cellubrevin impairs exocytosis of transferrin receptor‐containing vesicles in CHO cells. J Cell Biol 125: 1015–1024 · DOI
  13. Grabbe C, Zervas CG, Hunter T, Brown NH, Palmer RH (2004) Focal adhesion kinase is not required for integrin function or viability in Drosophila. Development 131: 5795–5805 · DOI
  14. Guais A, Siegrist S, Solhonne B, Jouault H, Guellaen G, Bulle F (2006) h‐Goliath, paralog of GRAIL, is a new E3 ligase protein, expressed in human leukocytes. Gene 374: 112–120 · DOI · Paper page
  15. Haglund K, Dikic I (2012) The role of ubiquitylation in receptor endocytosis and endosomal sorting. J Cell Sci 125: 265–275 · DOI
  16. Hernandez JM, Stein A, Behrmann E, Riedel D, Cypionka A, Farsi Z, Walla PJ, Raunser S, Jahn R (2012) Membrane fusion intermediates via directional and full assembly of the SNARE complex. Science 336: 1581–1584 · DOI
  17. Hong W (2005) SNAREs and traffic. Biochim Biophys Acta 1744: 493–517
  18. Hornbeck PV, Kornhauser JM, Tkachev S, Zhang B, Skrzypek E, Murray B, Latham V, Sullivan M (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post‐translational modifications in man and mouse. Nucleic Acids Res 40: D261–D270 · DOI
  19. Jahn R, Scheller RH (2006) SNAREs‐‐engines for membrane fusion. Nat Rev Mol Cell Biol 7: 631–643 · DOI · Paper page
  20. Knecht V, Grubmuller H (2003) Mechanical coupling via the membrane fusion SNARE protein syntaxin 1A: a molecular dynamics study. Biophys J 84: 1527–1547 · DOI
  21. Li W, Bengtson MH, Ulbrich A, Matsuda A, Reddy VA, Orth A, Chanda SK, Batalov S, Joazeiro CA (2008) Genome‐wide and functional annotation of human E3 ubiquitin ligases identifies MULAN, a mitochondrial E3 that regulates the organelle's dynamics and signaling. PLoS ONE 3: e1487 · DOI
  22. Lovering R, Hanson IM, Borden KL, Martin S, O'Reilly NJ, Evan GI, Rahman D, Pappin DJ, Trowsdale J, Freemont PS (1993) Identification and preliminary characterization of a protein motif related to the zinc finger. Proc Natl Acad Sci USA 90: 2112–2116 · DOI
  23. Mahon P, Bateman A (2000) The PA domain: a protease‐associated domain. Protein Sci 9: 1930–1934 · DOI
  24. Mayor S, Presley JF, Maxfield FR (1993) Sorting of membrane components from endosomes and subsequent recycling to the cell surface occurs by a bulk flow process. J Cell Biol 121: 1257–1269 · DOI · Paper page
  25. Mazot P, Cazes A, Boutterin MC, Figueiredo A, Raynal V, Combaret V, Hallberg B, Palmer RH, Delattre O, Janoueix‐Lerosey I, Vigny M (2011) The constitutive activity of the ALK mutated at positions F1174 or R1275 impairs receptor trafficking. Oncogene 30: 2017–2025 · DOI
  26. McMahon HT, Ushkaryov YA, Edelmann L, Link E, Binz T, Niemann H, Jahn R, Sudhof TC (1993) Cellubrevin is a ubiquitous tetanus‐toxin substrate homologous to a putative synaptic vesicle fusion protein. Nature 364: 346–349 · DOI
  27. McNew JA, Parlati F, Fukuda R, Johnston RJ, Paz K, Paumet F, Sollner TH, Rothman JE (2000a) Compartmental specificity of cellular membrane fusion encoded in SNARE proteins. Nature 407: 153–159 · DOI
  28. McNew JA, Weber T, Parlati F, Johnston RJ, Melia TJ, Sollner TH, Rothman JE (2000b) Close is not enough: SNARE‐dependent membrane fusion requires an active mechanism that transduces force to membrane anchors. J Cell Biol 150: 105–117 · DOI
  29. Penengo L, Mapelli M, Murachelli AG, Confalonieri S, Magri L, Musacchio A, Di Fiore PP, Polo S, Schneider TR (2006) Crystal structure of the ubiquitin binding domains of rabex‐5 reveals two modes of interaction with ubiquitin. Cell 124: 1183–1195 · DOI
  30. Piper RC, Lehner PJ (2011) Endosomal transport via ubiquitination. Trends Cell Biol 21: 647–655 · DOI
  31. Platta HW, Stenmark H (2011) Endocytosis and signaling. Curr Opin Cell Biol 23: 393–403 · DOI
  32. Poteryaev D, Datta S, Ackema K, Zerial M, Spang A (2010) Identification of the switch in early‐to‐late endosome transition. Cell 141: 497–508 · DOI · Paper page
  33. Proux‐Gillardeaux V, Gavard J, Irinopoulou T, Mege RM, Galli T (2005) Tetanus neurotoxin‐mediated cleavage of cellubrevin impairs epithelial cell migration and integrin‐dependent cell adhesion. Proc Natl Acad Sci USA 102: 6362–6367 · DOI
  34. Schmid SL, Fuchs R, Male P, Mellman I (1988) Two distinct subpopulations of endosomes involved in membrane recycling and transport to lysosomes. Cell 52: 73–83 · DOI
  35. Snyder DA, Kelly ML, Woodbury DJ (2006) SNARE complex regulation by phosphorylation. Cell Biochem Biophys 45: 111–123 · DOI
  36. Stein A, Weber G, Wahl MC, Jahn R (2009) Helical extension of the neuronal SNARE complex into the membrane. Nature 460: 525–528 · DOI
  37. Steinman RM, Mellman IS, Muller WA, Cohn ZA (1983) Endocytosis and the recycling of plasma membrane. J Cell Biol 96: 1–27 · DOI
  38. Stenmark H, Parton RG, Steele‐Mortimer O, Lutcke A, Gruenberg J, Zerial M (1994) Inhibition of rab5 GTPase activity stimulates membrane fusion in endocytosis. EMBO J 13: 1287–1296 · DOI · Paper page
  39. Su LL, Iwai H, Lin JT, Fathman CG (2009) The transmembrane E3 ligase GRAIL ubiquitinates and degrades CD83 on CD4 T cells. J Immunol 183: 438–444 · DOI
  40. Sudhof TC, Rothman JE (2009) Membrane fusion: grappling with SNARE and SM proteins. Science 323: 474–477 · DOI · Paper page
  41. Tayeb MA, Skalski M, Cha MC, Kean MJ, Scaife M, Coppolino MG (2005) Inhibition of SNARE‐mediated membrane traffic impairs cell migration. Exp Cell Res 305: 63–73 · DOI
  42. Thibault ST, Singer MA, Miyazaki WY, Milash B, Dompe NA, Singh CM, Buchholz R, Demsky M, Fawcett R, Francis‐Lang HL, Ryner L, Cheung LM, Chong A, Erickson C, Fisher WW, Greer K, Hartouni SR, Howie E, Jakkula L, Joo D et al (2004) A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac. Nat Genet 36: 283–287 · DOI
  43. Ullrich O, Horiuchi H, Bucci C, Zerial M (1994) Membrane association of Rab5 mediated by GDP‐dissociation inhibitor and accompanied by GDP/GTP exchange. Nature 368: 157–160 · DOI
  44. Valsdottir R, Hashimoto H, Ashman K, Koda T, Storrie B, Nilsson T (2001) Identification of rabaptin‐5, rabex‐5, and GM130 as putative effectors of rab33b, a regulator of retrograde traffic between the Golgi apparatus and ER. FEBS Lett 508: 201–209 · DOI
  45. van Wijk SJ, Fiskin E, Putyrski M, Pampaloni F, Hou J, Wild P, Kensche T, Grecco HE, Bastiaens P, Dikic I (2012) Fluorescence‐based sensors to monitor localization and functions of linear and K63‐linked ubiquitin chains in cells. Mol Cell 47: 797–809 · DOI
  46. Veale KJ, Offenhauser C, Whittaker SP, Estrella RP, Murray RZ (2010) Recycling endosome membrane incorporation into the leading edge regulates lamellipodia formation and macrophage migration. Traffic 11: 1370–1379 · DOI
  47. Velichkova M, Juan J, Kadandale P, Jean S, Ribeiro I, Raman V, Stefan C, Kiger AA (2010) Drosophila Mtm and class II PI3K coregulate a PI(3)P pool with cortical and endolysosomal functions. J Cell Biol 190: 407–425 · DOI
  48. von Zastrow M, Sorkin A (2007) Signaling on the endocytic pathway. Curr Opin Cell Biol 19: 436–445 · DOI
  49. Xu G, Paige JS, Jaffrey SR (2010) Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Nat Biotechnol 28: 868–873 · DOI
  50. Yang HL, Eriksson T, Vernersson E, Vigny M, Hallberg B, Palmer RH (2007) The ligand Jelly Belly (Jeb) activates the Drosophila Alk RTK to drive PC12 cell differentiation, but is unable to activate the mouse ALK RTK. J Exp Zool B Mol Dev Evol 308: 269–282 · DOI
  51. Zylbersztejn K, Galli T (2011) Vesicular traffic in cell navigation. FEBS J 278: 4497–4505 · DOI

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Metadata

Authors
Yamazaki, Y., Schönherr, C., Varshney, G. K., Dogru, M., Hallberg, B., & Palmer, R. H.
Venue
The EMBO Journal
Published
2013-01-25
Volume
32
Issue
4
Pages
524-537
ISSN
  • 0261-4189
  • 1460-2075
Cited by
55
References
6
Language
en

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