Spatial partitioning of the regulatory landscape of the X-inactivation centre

Cited by (1,010)

Items 201–300 of 1,010

1. Gene Insertion Into Genomic Safe Harbors for Human Gene Therapy
   Papapetrou, Eirini P, Schambach, Axel · 2016 · Molecular Therapy
2. Identification of significant chromatin contacts from HiChIP data by FitHiChIP
   Bhattacharyya, Sourya, Chandra, Vivek, Vijayanand, Pandurangan, Ay, Ferhat · 2019 · Nature Communications
3. FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
   Kai Kruse, Clemens B. Hug, Juan M. Vaquerizas · 2020 · Genome biology
4. Transcriptional Dysregulation of MYC Reveals Common Enhancer-Docking Mechanism
   Jurian Schuijers, John C. Manteiga, Abraham S. Weintraub, Daniel S. Day, Alicia Viridiana Zamudio, Denes Hnisz, Tong Ihn Lee, Richard A. Young · 2018 · Cell Reports
5. Chromosome organization in bacteria: mechanistic insights into genome structure and function
   Remus Thei Dame, Fatema‐Zahra M. Rashid, David C. Grainger · 2019 · Nature Reviews Genetics
6. CTCF: the protein, the binding partners, the binding sites and their chromatin loops
   Sjoerd J.B. Holwerda, Wouter L. de Laat · 2013 · Philosophical Transactions of the Royal Society B Biological Sciences
7. lncRNAs: Insights into their function and mechanics in underlying disorders
   Xiaolei Li, Zhiqiang Wu, Xiaobing Fu, Weidong Han · 2014 · Mutation Research/Reviews in Mutation Research
8. Nuclear compartmentalization as a mechanism of quantitative control of gene expression
   Prashant Bhat, Drew D. Honson, Mitchell Guttman · 2021 · Nature Reviews Molecular Cell Biology
9. Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization
   Iain Williamson, Soizik Berlivet, Ragnhild Eskeland, Shelagh Boyle, Robert Scott Illingworth, Denis Paquette, Josée Dostie, Wendy A. Bickmore · 2014 · Genes & Development
10. Regulatory Enhancer–Core-Promoter Communication via Transcription Factors and Cofactors
    Zabidi, Muhammad A., Stark, Alexander · 2016 · Trends in Genetics
11. Enhancer hubs and loop collisions identified from single-allele topologies
    Allahyar, Amin, Vermeulen, Carlo, Bouwman, Britta A. M., Krijger, Peter H. L., Verstegen, Marjon J. A. M., Geeven, Geert, van Kranenburg, Melissa, Pieterse, Mark, Straver, Roy, Haarhuis, Judith H. I. et al. · 2018 · Nature Genetics
12. Chromatin Compaction Protects Genomic DNA from Radiation Damage
    Hideaki Takata, Tomo Hanafusa, Toshiaki Mori, Mari Shimura, Yutaka Iida, Kenichi Ishikawa, Kenichi Yoshikawa, Yuko Yoshikawa, Kazuhiro Maeshima · 2013 · PLoS ONE
13. TAD disruption as oncogenic driver
    Anne-Laure Valton, Job Dekker · 2016 · Current Opinion in Genetics & Development
14. Comparison of computational methods for the identification of topologically associating domains
    Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello · 2018 · Genome biology
15. HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types
    Zirkel, Anne, Nikolic, Milos, Sofiadis, Konstantinos, Mallm, Jan-Philipp, Brackley, Chris A., Gothe, Henrike, Drechsel, Oliver, Becker, Christian, Altmüller, Janine, Josipovic, Natasa et al. · 2018 · Molecular Cell
16. Three-dimensional modeling of theP. falciparumgenome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
    Ferhat Ay, Evelien M. Bunnik, Nelle Varoquaux, Sebastiaan M. Bol, Jacques G. Prudhomme, Jean‐Philippe Vert, William Stafford Noble, Karine G. Le Roch · 2014 · Genome Research
17. Transcription in Living Cells: Molecular Mechanisms of Bursting
    Rodriguez, Joseph, Larson, Daniel R. · 2020 · Annual Review of Biochemistry
18. High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
    Houssam Hajjoul, Julien Mathon, Hubert Ranchon, Isabelle Goiffon, Julien Mozziconacci, Benjamin Albert, Pascal Carrivain, Jean‐Marc Victor, Olivier Gadal, Kerstin Bystricky et al. · 2013 · Genome Research
19. Two major mechanisms of chromosome organization
    Leonid A. Mirny, Maxim Imakaev, Nezar A. Abdennur · 2019 · Current Opinion in Cell Biology
20. The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
    Symmons, Orsolya, Pan, Leslie, Remeseiro, Silvia, Aktas, Tugce, Klein, Felix, Huber, Wolfgang, Spitz, François · 2016 · Developmental Cell
21. C2H2 Zinc Finger Proteins: The Largest but Poorly Explored Family of Higher Eukaryotic Transcription Factors
    Anna Fedotova, Artem N. Bonchuk, Vladic Mogila, Pavel G Georgiev · 2017 · Acta Naturae
22. Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II
    Ryosuke Nagashima, Kayo Hibino, S.S. Ashwin, Michael Babokhov, Shin Fujishiro, Ryosuke Imai, Tadasu Nozaki, Sachiko Tamura, Tomomi Tani, Hiroshi Kimurâ et al. · 2019 · The Journal of Cell Biology
23. Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia
    Andreas Kloetgen, Palaniraja Thandapani, Panagiotis Ntziachristos, Yohana E. Ghebrechristos, Sofia Nomikou, Charalampos Lazaris, Xufeng Chen, Hai Hu, Sofia Bakogianni, Jingjing Wang et al. · 2020 · Nature Genetics
24. Chromatin as dynamic 10-nm fibers
    Kazuhiro Maeshima, Ryosuke Imai, Sachiko Tamura, Tadasu Nozaki · 2014 · Chromosoma
25. An Overview of Genome Organization and How We Got There: from FISH to Hi-C
    James Fraser, Iain Williamson, Wendy A. Bickmore, Josée Dostie · 2015 · Microbiology and Molecular Biology Reviews
26. Cell-of-origin-specific 3D genome structure acquired during somatic cell reprogramming
    Krijger, Peter Hugo Lodewijk, Di Stefano, Bruno, de Wit, Elzo, Limone, Francesco, van Oevelen, Chris, de Laat, Wouter, Graf, Thomas · 2016 · Cell stem cell
27. Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes
    Judith F. Kribelbauer, Chaitanya Rastogi, Harmen J. Bussemaker, Richard S. Mann · 2019 · Annual Review of Cell and Developmental Biology
28. Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
    Hsieh, Tsung-Han S, Fudenberg, Geoffrey, Goloborodko, Anton, Rando, Oliver J · 2016 · Nature Methods
29. Polymer physics predicts the effects of structural variants on chromatin architecture
    Simona Bianco, Darío G. Lupiáñez, Andrea M. Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo et al. · 2018 · Nature Genetics
30. Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer
    Sarah E. Johnstone, Alejandro Reyes, Yifeng Qi, C. Adriaens, E. Hegazi, K. Pelka, Jonathan H. Chen, Lu-Li Zou, Y. Drier, Vivian C. Hecht et al. · 2020 · Cell
31. Transcription shapes 3D chromatin organization by interacting with loop extrusion
    Edward J. Banigan, Wen Tang, Aafke A. van den Berg, Roman R. Stocsits, Gordana Wutz, Hugo B. Brandão, Georg A. Busslinger, Jan‐Michael Peters, Leonid A. Mirny · 2023 · Proceedings of the National Academy of Sciences
32. HiCPlotter integrates genomic data with interaction matrices
    Kadir Caner Akdemir, Lynda Chin · 2015 · Genome biology
33. Epigenome in Early Mammalian Development: Inheritance, Reprogramming and Establishment
    Qianhua Xu, Wei Xie · 2017 · Trends in Cell Biology
34. Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes
    Yinxiu Zhan, Luca Mariani, Iros Barozzi, Edda G. Schulz, Nils Blüthgen, Michael Beda Stadler, Guido Tiana, Luca Giorgetti · 2017 · Genome Research
35. Chromatin Insulators: Linking Genome Organization to Cellular Function
    Jennifer E. Phillips‐Cremins, Victor G. Corces · 2013 · Molecular Cell
36. Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
    Roland Jäger, Gabriele Migliorini, Marc Henrion, Radhika Kandaswamy, Helen E. Speedy, Andreas Heindl, Nicola Whiffin, Maria José Carnicer, Laura R. Broome, Nicola H. Dryden et al. · 2015 · Nature Communications
37. Subtype-specific 3D genome alteration in acute myeloid leukaemia
    Xu, Jie, Song, Fan, Lyu, Huijue, Kobayashi, Mikoto, Zhang, Baozhen, Zhao, Ziyu, Hou, Ye, Wang, Xiaotao, Luan, Yu, Jia, Bei et al. · 2022 · Nature
38. Replication timing and transcriptional control: beyond cause and effect — part III
    Juan Carlos Rivera‐Mulia, David M. Gilbert · 2016 · Current Opinion in Cell Biology
39. Nucleosomal arrays self‐assemble into supramolecular globular structures lacking 30‐nm fibers
    Kazuhiro Maeshima, Ryan A. Rogge, Sachiko Tamura, Yasumasa Joti, Takaaki Hikima, Heather J. Szerlong, Christine Krause, Jake Herman, Erik Seidel, Jennifer G. DeLuca et al. · 2016 · The EMBO Journal
40. Embryonic timing, axial stem cells, chromatin dynamics, and the Hox clock
    Jacqueline Deschamps, Denis Duboule · 2017 · Genes & Development
41. Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation
    Rui R. Catarino, Alexander Stark · 2018 · Genes & Development
42. Mechanisms of Interplay between Transcription Factors and the 3D Genome
    Seungsoo Kim, Jay Shendure · 2019 · Molecular Cell
43. Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function
    Rachel Patton McCord, Noam Kaplan, Luca Giorgetti · 2020 · Molecular Cell
44. Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery
    Nair, Lekha, Chung, Hachung, Basu, Uttiya · 2020 · Nature Reviews Molecular Cell Biology
45. Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap
    Elisabetta Giuffra, Christopher Keith Tuggle · 2018 · Annual Review of Animal Biosciences
46. 4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis
    Peter H.L. Krijger, Geert Geeven, Valerio Bianchi, Catharina R.E. Hilvering, Wouter L. de Laat · 2019 · Methods
47. Landscape of cohesin-mediated chromatin loops in the human genome
    Fabian Grubert, Rohith Srivas, Damek V. Spacek, Maya M. Kasowski, Mariana Ruiz-Velasco, Nasa Sinnott-Armstrong, Peyton Greenside, Anil M. Narasimha, Qing Liu, Benjamin S. Geller et al. · 2020 · Nature
48. Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin
    Miron, Ezequiel, Oldenkamp, Roel, Brown, Jill M., Pinto, David M. S., Xu, C. Shan, Faria, Ana R., Shaban, Haitham A., Rhodes, James D. P., Innocent, Cassandravictoria, de Ornellas, Sara et al. · 2020 · Science Advances
49. Rev-erbα Dynamically Modulates Chromatin Looping to Control Circadian Gene Transcription
    Y. H. Kim, Sajid A. Marhon, Yu-Xiang Zhang, David J. Steger, Kyoung-Jae Won, M. Lazar · 2018 · Science
50. Topologically associating domain boundaries that are stable across diverse cell types are evolutionarily constrained and enriched for heritability
    Evonne McArthur, John A. Capra · 2021 · The American Journal of Human Genetics
51. Transformation of Accessible Chromatin and 3D Nucleome Underlies Lineage Commitment of Early T Cells
    Hu, Gangqing, Cui, Kairong, Fang, Difeng, Hirose, Satoshi, Wang, Xun, Wangsa, Darawalee, Jin, Wenfei, Ried, Thomas, Liu, Pentao, Zhu, Jinfang et al. · 2018 · Immunity
52. HiTC: exploration of high-throughput ‘C’ experiments
    Nicolas Servant, Bryan R. Lajoie, Elphège Pierre Nora, Luca Giorgetti, Chongjian Chen, Édith Heard, Job Dekker, Emmanuel Barillot · 2012 · Bioinformatics
53. Bayesian Inference of Spatial Organizations of Chromosomes
    Ming Hu, Ke Deng, Zhaohui Steve Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu · 2013 · PLoS Computational Biology
54. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers
    Jian Yan, Shi-An A. Chen, Andrea Local, Tristin Liu, Yunjiang Qiu, Ah Young Lee, Inkyung Jung, Sebastian Preißl, Chloe M. Rivera, Chaochen Wang et al. · 2018 · Cell Research
55. In situ genome sequencing resolves DNA sequence and structure in intact biological samples
    Andrew C. Payne, Zachary Chiang, Paul Reginato, Sarah M. Mangiameli, Evan M. Murray, Chun‐Chen Yao, Styliani Markoulaki, Andrew Earl, Ajay S. Labade, Rudolf Jaenisch et al. · 2021 · Science
56. A chromosome folding intermediate at the condensin-to-cohesin transition during telophase
    Kristin Abramo, Anne-Laure Valton, Sergey V. Venev, Hakan Özadam, A. Nicole Fox, Job Dekker · 2019 · Nature Cell Biology
57. Polymer physics of chromosome large-scale 3D organisation
    Andrea M. Chiariello, Carlo Annunziatella, Simona Bianco, Andrea Esposito, Mario Nicodemi · 2016 · Scientific Reports
58. Enhancer selectivity in space and time: from enhancer–promoter interactions to promoter activation
    Yang, Jin H., Hansen, Anders S. · 2024 · Nature Reviews Molecular Cell Biology
59. A Statistical Framework to Predict Functional Non-Coding Regions in the Human Genome Through Integrated Analysis of Annotation Data
    Qiongshi Lu, Yiming Hu, Jiehuan Sun, Yu‐Wei Cheng, Kei‐Hoi Cheung, Hongyu Zhao · 2015 · Scientific Reports
60. Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts
    Jonas Paulsen, Monika Sekelja, Anja R. Oldenburg, Alice Barateau, Nolwenn Briand, Erwan Delbarre, Akshay Shah, Anita L. Sørensen, Corinne Vigouroux, Brigitte Buendia et al. · 2017 · Genome biology
61. Xist localization and function: new insights from multiple levels
    Cerase, Andrea, Pintacuda, Greta, Tattermusch, Anna, Avner, Philip · 2015 · Genome biology
62. CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion
    Iain F. Davidson, Roman Barth, Maciej Zaczek, Jaco van der Torre, Wen Tang, Kota Nagasaka, Richard Janissen, Jacob W. J. Kerssemakers, Gordana Wutz, Cees Dekker et al. · 2023 · Nature
63. Regulatory Landscaping: How Enhancer-Promoter Communication Is Sculpted in 3D
    Michael I. Robson, Alessa R. Ringel, Stefan Mundlos · 2019 · Molecular Cell
64. CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains
    Huang, Hui, Zhu, Quan, Jussila, Adam, Han, Yuanyuan, Bintu, Bogdan, Kern, Colin, Conte, Mattia, Zhang, Yanxiao, Bianco, Simona, Chiariello, Andrea M. et al. · 2021 · Nature Genetics
65. Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
    Rhodes, James D.P., Feldmann, Angelika, Hernández-Rodríguez, Benjamín, Díaz, Noelia, Brown, Jill M., Fursova, Nadezda A., Blackledge, Neil P., Prathapan, Praveen, Dobrinic, Paula, Huseyin, Miles K. et al. · 2020 · Cell Reports
66. On TADs and LADs: Spatial Control Over Gene Expression
    Adriana Gonzalez‐Sandoval, Susan M. Gasser · 2016 · Trends in Genetics
67. A CTCF Code for 3D Genome Architecture
    Michael H. Nichols, Victor G. Corces · 2015 · Cell
68. Chromatin organization and transcriptional regulation
    Michael R. Hübner, Mélanie A. Eckersley-Maslin, David L. Spector · 2012 · Current Opinion in Genetics & Development
69. Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation
    J. Mauro Calabrese, Wei Sun, Lingyun Song, Joshua W. Mugford, Lucy H. Williams, Della Yee, Joshua Starmer, Piotr A. Mieczkowski, Gregory E. Crawford, Terry Magnuson · 2012 · Cell
70. Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
    Yan Zhang, Lin An, Jie Xu, Bo Zhang, Wenjin Jim Zheng, Ming Hu, Jijun Tang, Feng Yue · 2018 · Nature Communications
71. Regulation of single-cell genome organization into TADs and chromatin nanodomains
    Quentin Szabo, Axelle Donjon, Ivana Jerković, Giorgio Lucio Papadopoulos, Thierry Cheutin, Boyan Bonev, Elphège Pierre Nora, Benoit G. Bruneau, Frédéric Bantignies, Giacomo Cavalli · 2020 · Nature Genetics
72. How to rule the nucleus: divide et impera
    Irina V. Solovei, Katharina Thanisch, Yana N. Feodorova · 2016 · Current Opinion in Cell Biology
73. Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains
    Gil Ron, Yuval Globerson, Dror Moran, Tommy Kaplan · 2017 · Nature Communications
74. Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains
    Chris A. Brackley, James Johnson, Steven L. Kelly, Peter R. Cook, Davide Marenduzzo · 2016 · Nucleic Acids Research
75. Chromosome conformation capture technologies and their impact in understanding genome function
    Satish Sati, Giacomo Cavalli · 2016 · Chromosoma
76. Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation
    Zhou, Jingtian, Ma, Jianzhu, Chen, Yusi, Cheng, Chuankai, Bao, Bokan, Peng, Jian, Sejnowski, Terrence J., Dixon, Jesse R., Ecker, Joseph R. · 2019 · Proceedings of the National Academy of Sciences
77. Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication
    Jiao Sima, Abhijit Chakraborty, Vishnu Dileep, Marco Michalski, Kyle N. Klein, Nicolas P. Holcomb, Jesse L. Turner, Michelle T. Paulsen, Juan Carlos Rivera‐Mulia, Claudia Trevilla‐García et al. · 2018 · Cell
78. Pioneer of prostate cancer: past, present and the future of FOXA1
    Mona Teng, Stanley Zhou, Changmeng Cai, Mathieu Lupien, Housheng Hansen He · 2020 · Protein & Cell
79. X chromosome inactivation in human development
    Catherine Patrat, Jean‐François Ouimette, Claire Rougeulle · 2020 · Development
80. Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale
    Zhou, Jian · 2022 · Nature Genetics
81. Segmental folding of chromosomes: A basis for structural and regulatory chromosomal neighborhoods?
    Elphège Pierre Nora, Job Dekker, Édith Heard · 2013 · BioEssays
82. Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci
    Daniel Smeets, Yolanda Markaki, Volker Johann Schmid, Felix Kraus, Anna Tattermusch, Andrea Cerase, Michael Sterr, Susanne Fiedler, Justin Demmerle, Jens Popken et al. · 2014 · Epigenetics & Chromatin
83. High-throughput genome scaffolding from in vivo DNA interaction frequency
    Noam Kaplan, Job Dekker · 2013 · Nature Biotechnology
84. Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map
    Kyle P. Eagen, Erez Lieberman Aiden, Roger D. Kornberg · 2017 · Proceedings of the National Academy of Sciences
85. Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers
    Thiecke, Michiel J., Wutz, Gordana, Muhar, Matthias, Tang, Wen, Bevan, Stephen, Malysheva, Valeriya, Stocsits, Roman, Neumann, Tobias, Zuber, Johannes, Fraser, Peter et al. · 2020 · Cell Reports
86. Multiscale and integrative single-cell Hi-C analysis with Higashi
    Ruochi Zhang, Tianming Zhou, Jian Ma · 2021 · Nature Biotechnology
87. The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
    Eddie Rodríguez-Carballo, Lucille Lopez‐Delisle, Ye Zhan, Pierre J. Fabre, Leonardo L Beccari, Imane El-Idrissi, Thi Hanh Nguyen Huynh, Hakan Özadam, Job Dekker, Denis Duboule · 2017 · Genes & Development
88. Epigenomics
    Ke Wang, Howard Y. Chang · 2018 · Circulation Research
89. The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
    Sarah B. Reiff, Andrew J. Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado, Soohyun Lee, Alexander D. Veit, Alexander K. Balashov, Carl M. Vitzthum et al. · 2022 · Nature Communications
90. In search of the determinants of enhancer–promoter interaction specificity
    Joris van Arensbergen, Bas van Steensel, Harmen J. Bussemaker · 2014 · Trends in Cell Biology
91. CTCF-mediated topological boundaries during development foster appropriate gene regulation
    Varun K. Narendra, Milica Bulajić, Job Dekker, Esteban O. Mazzoni, Danny Reinberg · 2016 · Genes & Development
92. Measuring the reproducibility and quality of Hi-C data
    Galip Gürkan Yardımcı, Hakan Özadam, Michael E.G. Sauria, Oana Ursu, Koon‐Kiu Yan, Tao Yang, Abhijit Chakraborty, Arya Kaul, Bryan R. Lajoie, Fan Song et al. · 2019 · Genome biology
93. Enhancers in disease: molecular basis and emerging treatment strategies
    Annique Claringbould, Judith B. Zaugg · 2021 · Trends in Molecular Medicine
94. 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence
    Sati, Satish, Bonev, Boyan, Szabo, Quentin, Jost, Daniel, Bensadoun, Paul, Serra, Francois, Loubiere, Vincent, Papadopoulos, Giorgio Lucio, Rivera-Mulia, Juan-Carlos, Fritsch, Lauriane et al. · 2020 · Molecular Cell
95. Clustering of Tissue-Specific Sub-TADs Accompanies the Regulation of HoxA Genes in Developing Limbs
    Soizik Berlivet, Denis Paquette, Annie Dumouchel, David Langlais, Josée Dostie, Marie Kmita · 2013 · PLoS Genetics
96. Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases
    Leina Lu, Xiaoxiao Liu, Wei‐Kai Huang, Paola Giusti‐Rodríguez, Jian Cui, Shanshan Zhang, Wanying Xu, Zhexing Wen, Shufeng Ma, Jonathan D. Rosen et al. · 2020 · Molecular Cell
97. Topologically associating domain boundaries are required for normal genome function
    Sudha Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina‐Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza et al. · 2023 · Communications Biology
98. Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization
    Aleksandar Kojic, Ana Cuadrado, Magali De Koninck, Daniel Giménez-Llorente, Miriam Rodríguez-Corsino, Gonzalo Goméz-López, François Le Dily, Marc A. Martí-Renom, Ana Losada · 2018 · Nature Structural & Molecular Biology
99. Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
    Vishnu Dileep, Ferhat Ay, Jiao Sima, Daniel L. Vera, William Stafford Noble, David M. Gilbert · 2015 · Genome Research
100. MicroRNA degradation by a conserved target RNA regulates animal behavior
     Angelo Bitetti, Allison C. Mallory, Elisabetta Golini, Claudia Carrieri, Héctor Carreño Gutiérrez, Emerald Perlas, Yuvia Alheli Perez-Rico, Glauco P. Tocchini‐Valentini, Anton James Enright, William Norton et al. · 2018 · Nature Structural & Molecular Biology