Gut dysbiosis associated with hepatitis C virus infection
Open accessAbstract
Background: Little is known about the effect of hepatitis C virus (HCV) infection on gut microbiota and the relationship between alteration of gut microbiota and chronic hepatitis C (CHC) progression. We performed a comparative study of gut microbiota composition between CHC patients and healthy individuals. Methods: Fecal samples from 166 CHC patients were compared with those from 23 healthy individuals; the gut microbiota community was analyzed using 16S ribosomal RNA gene sequencing. CHC patients were diagnosed with persistently normal serum alanine aminotransferase without evidence of liver cirrhosis (LC) (PNALT, n = 18), chronic hepatitis (CH, n = 84), LC (n = 40), and hepatocellular carcinoma in LC (n = 24). Results: Compared with healthy individuals, bacterial diversity was lower in persons with HCV infection, with a decrease in the order Clostridiales and an increase in Streptococcus and Lactobacillus. Microbiota dysbiosis already appeared in the PNALT stage with the transient increase in Bacteroides and Enterobacteriaceae. Predicted metagenomics of microbial communities showed an increase in the urease gene mainly encoded by viridans streptococci during CHC progression, consistent with a significantly higher fecal pH in CH and LC patients than in healthy individuals or those in the PNALT stage. Conclusions: HCV infection is associated with gut dysbiosis, even in patients with mild liver disease. Additionally, overgrowth of viridans streptococci can account for hyperammonemia in CH and LC. Further studies would help to propose a novel treatment strategy because the gut microbiome can be therapeutically altered, potentially reducing the complications of chronic liver disease.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
S. salivarius was dramatically increased in association with chronic hepatitis C progression.
“Interestingly, [163] reported that a specific species, S. salivarius, was dramatically increased in association with chronic hepatitis C (CHC) progression.”
From The Potential Impact of Probiotics on Human Health: An Update on Their Health-Promoting Properties (2024) · cites this paper as [163]
GI bacterial alpha diversity significantly decreases in CHC patients compared with healthy individuals and is associated with severity of clinical stage.
“GI bacterial alpha diversity significantly decreases in CHC patients compared with healthy individuals and is associated with the severity of the clinical stage (Inoue et al., 2018).”
From Viral Infections, the Microbiome, and Probiotics (2021) · cites this paper as Inoue et al., 2018
Streptococcus salivarius was found to be drastically increased in association with CHC progression.
“Interestingly a specific species, Streptococcus salivarius, was found to be drastically increased in association with CHC progression (Inoue et al., 2018).”
From Viral Infections, the Microbiome, and Probiotics (2021) · cites this paper as Inoue et al., 2018
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Edgar, R. C. (2013) · Nature Methods · doi:10.1038/nmeth.2604 · Cited by 16,587 · see citing works
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
Furusawa, Y., Obata, Y., Fukuda, S., Endo, T. A., Nakato, G., Takahashi, D., Nakanishi, Y., Uetake, C., Kato, K., Kato, T., et al. (2013) · Nature · doi:10.1038/nature12721 · Cited by 5,549 · see citing works
Induction of Colonic Regulatory T Cells by Indigenous <i>Clostridium</i> Species
Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., Cheng, G., Yamasaki, S., Saito, T., Ohba, Y., et al. (2011) · Science · doi:10.1126/science.1198469 · Cited by 3,752 · see citing works
The gut flora as a forgotten organ
O'Hara, A. M., & Shanahan, F. (2006) · The EMBO Reports · doi:10.1038/sj.embor.7400731 · Cited by 2,791 · see citing works
Colonic Health: Fermentation and Short Chain Fatty Acids
Wong, J. M. W., de Souza, R., Kendall, C. W. C., Emam, A., & Jenkins, D. J. A. (2006) · Journal of Clinical Gastroenterology · doi:10.1097/00004836-200603000-00015 · Cited by 2,739 · see citing works
Mathematical Theory of Communication
Binder, M. D., Hirokawa, N., & Windhorst, U. (2008) · Springer eBooks · doi:10.1007/978-3-540-29678-2_3338 · Cited by 2,297 · see citing works
Alterations of the human gut microbiome in liver cirrhosis
Qin, N., Yang, F., Li, A., Prifti, E., Chen, Y., Shao, L., Guo, J., Le Chatelier, E., Yao, J., Wu, L., et al. (2014) · Nature · doi:10.1038/nature13568 · Cited by 2,177 · see citing works
Zhu, L., Baker, S. S., Gill, C., Liu, W., Alkhouri, R., Baker, R. D., & Gill, S. R. (2013) · Hepatology · doi:10.1002/hep.26093 · Cited by 1,708 · see citing works
ON THE MATHEMATICAL THEORY OF COMMUNICATION
Takada, Y. (1954) · The Japanese journal of psychology · doi:10.4992/jjpsy.25.110 · Cited by 1,662 · see citing works
Defining dysbiosis and its influence on host immunity and disease
Petersen, C., & Round, J. L. (2014) · Cellular Microbiology · doi:10.1111/cmi.12308 · Cited by 1,185 · see citing works
Characterization of fecal microbial communities in patients with liver cirrhosis
Chen, Y., Yang, F., Lu, H., Wang, B., Chen, Y., Lei, D., Wang, Y., Zhu, B., & Li, L. (2011) · Hepatology · doi:10.1002/hep.24423 · Cited by 1,038 · see citing works
Interactions Between the Intestinal Microbiome and Liver Diseases
Schnabl, B., & Brenner, D. A. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.01.020 · Cited by 971 · see citing works
Leone, V., Gibbons, S. M., Martinez, K., Hutchison, A. L., Huang, E. Y., Cham, C. M., Pierre, J. F., Heneghan, A. F., Nadimpalli, A., Hubert, N., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.03.006 · Cited by 908 · see citing works
Modulation of the fecal bile acid profile by gut microbiota in cirrhosis
Kakiyama, G., Pandak, W. M., Gillevet, P. M., Hylemon, P. B., Heuman, D. M., Daita, K., Takei, H., Muto, A., Nittono, H., Ridlon, J. M., et al. (2013) · Journal of Hepatology · doi:10.1016/j.jhep.2013.01.003 · Cited by 782 · see citing works
Tang, R., Wei, Y., Li, Y., Chen, W., Chen, H., Wang, Q., Yang, F., Miao, Q., Xiao, X., Zhang, H., et al. (2018) · Gut · doi:10.1136/gutjnl-2016-313332 · Cited by 434 · see citing works
Bajaj, J. S., Heuman, D. M., Sanyal, A. J., Hylemon, P. B., Sterling, R. K., Stravitz, R. T., Fuchs, M., Ridlon, J. M., Daita, K., Monteith, P., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060042 · Cited by 430 · see citing works
Bile Acids and Dysbiosis in Non-Alcoholic Fatty Liver Disease
Mouzaki, M., Wang, A. Y., Bandsma, R., Comelli, E. M., Arendt, B. M., Zhang, L., Fung, S., Fischer, S. E., McGilvray, I. G., & Allard, J. P. (2016) · PLOS ONE · doi:10.1371/journal.pone.0151829 · Cited by 385 · see citing works
Cosseau, C., Devine, D. A., Dullaghan, E., Gardy, J. L., Chikatamarla, A., Gellatly, S., Yu, L. L., Pistolic, J., Falsafi, R., Tagg, J., et al. (2008) · Infection and Immunity · doi:10.1128/iai.00188-08 · Cited by 293 · see citing works
Cultivable bacterial diversity from the human colon
Duncan, S. H., Louis, P., & Flint, H. J. (2007) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2007.02129.x · Cited by 279 · see citing works
Vaughn, B. P., Vatanen, T., Allegretti, J. R., Bai, A., Xavier, R. J., Korzenik, J. R., Gevers, D., Ting, A., Robson, S. C., & Moss, A. C. (2016) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000000893 · Cited by 229 · see citing works
Verbeke, L., Farre, R., Verbinnen, B., Covens, K., Vanuytsel, T., Verhaegen, J., Komuta, M., Roskams, T., Chatterjee, S., Annaert, P., et al. (2015) · The American Journal of Pathology · doi:10.1016/j.ajpath.2014.10.009 · Cited by 225 · see citing works
Large-Scale Survey of Gut Microbiota Associated With MHE Via 16S rRNA-Based Pyrosequencing
Zhang, Z., Zhai, H., Geng, J., Yu, R., Ren, H.-Q., Fan, H., & Shi, P. (2013) · The American Journal of Gastroenterology · doi:10.1038/ajg.2013.221 · Cited by 188 · see citing works
Epidemiology and natural history of hepatitis C virus infection.
Lee, M., Yang, H., Yuan, Y., L'Italien, G. J., & Chen, C. (2014) · PubMed Central · doi:10.3748/wjg.v20.i28.9270 · Cited by 188 · see citing works
Úbeda, M., Lario, M., Muñoz, L., Borrero, M.-J., Rodríguez-Serrano, M., Sánchez-Díaz, A.-M., del Campo, R., Lledó, L., Pastor, Ó., García-Bermejo, L., et al. (2016) · Journal of Hepatology · doi:10.1016/j.jhep.2015.12.010 · Cited by 178 · see citing works
Gut microbiome alterations in patients with stage 4 hepatitis C
Mahmoud, A., Adel, A., EL-Gendy, A. O., Essam, T. M., & Aziz, R. K. (2016) · Gut Pathogens · doi:10.1186/s13099-016-0124-2 · Cited by 146 · see citing works
Tuomisto, S., Pessi, T., Collin, P., Vuento, R., Aittoniemi, J., & Karhunen, P. J. (2014) · BMC Gastroenterology · doi:10.1186/1471-230x-14-40 · Cited by 141 · see citing works
Kalambokis, G. N., Mouzaki, A., Rodi, M., Pappas, K., Fotopoulos, A., Xourgia, X., & Tsianos, E. V. (2012) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2012.02.025 · Cited by 130 · see citing works
Vince, A., McNeil, N. I., Wager, J. D., & WRONG, O. M. (1990) · British Journal Of Nutrition · doi:10.1079/bjn19900088 · Cited by 129 · see citing works
Gómez‐Hurtado, I., Santacruz, A., Peiró, G., Zapater, P., Gutiérrez, A., Pérez‐Mateo, M., Sanz, Y., & Francés, R. (2011) · PLoS ONE · doi:10.1371/journal.pone.0023037 · Cited by 128 · see citing works
Lippai, D., Bala, S., Catalano, D. E., Kodys, K., & Szabó, G. (2014) · Alcoholism Clinical and Experimental Research · doi:10.1111/acer.12483 · Cited by 100 · see citing works
Heidrich, B., Vital, M., Plumeier, I., Döscher, N., Kahl, S., Kirschner, J., Ziegert, S., Solbach, P., Lenzen, H., Potthoff, A., et al. (2017) · Liver International · doi:10.1111/liv.13485 · Cited by 100 · see citing works
Intestinal microbiota in liver disease
Haque, T., & Barritt, A. S. (2016) · Best Practice & Research Clinical Gastroenterology · doi:10.1016/j.bpg.2016.02.004 · Cited by 76 · see citing works
Gut Microbiota and Hepatocellular Carcinoma
Tao, X., Wang, N., & Qin, W. (2015) · Gastrointestinal Tumors · doi:10.1159/000380895 · Cited by 72 · see citing works
Ammonia and inflammation in the pathogenesis of hepatic encephalopathy
Wright, G. A. K., & Jalan, R. (2007) · Hepatology · doi:10.1002/hep.21843 · Cited by 69 · see citing works
How do persistent infections with hepatitis C virus cause liver cancer?
Mitchell, J. K., Lemon, S. M., & McGivern, D. R. (2015) · Current Opinion in Virology · doi:10.1016/j.coviro.2015.09.003 · Cited by 60 · see citing works
Targeting Dysbiosis for the Treatment of Liver Disease
Anand, G. S., Zarrinpar, A., & Loomba, R. S. (2016) · Seminars in Liver Disease · doi:10.1055/s-0035-1571276 · Cited by 58 · see citing works
Intestinal permeability in a patient with liver cirrhosis
Aguirre-Valádez, J., Rivera-Espinosa, L., Méndez-Guerrero, O., Chávez-Pacheco, J. L., Juárez, I. G., & Torre, A. (2016) · Therapeutics and Clinical Risk Management · doi:10.2147/tcrm.s115902 · Cited by 50 · see citing works
Gastric secretion and peptic ulceration in cirrhosis
Fraser, A. G., Pounder, R. E., & Burroughs, A. K. (1993) · Journal of Hepatology · doi:10.1016/s0168-8278(05)80191-6 · Cited by 47 · see citing works
New Therapeutic Strategies for Primary Sclerosing Cholangitis
Williamson, K. D., & Chapman, R. W. (2016) · Seminars in Liver Disease · doi:10.1055/s-0035-1571274 · Cited by 46 · see citing works
Gut Microbiota and Alcoholic Liver Disease
Scarpellini, E., Forlino, M., Marinella, L., Rasetti, C., Fava, G., Abenavoli, L., & Adriano, D. (2016) · Reviews on Recent Clinical Trials · doi:10.2174/1574887111666160810100538 · Cited by 27 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Gut microbiome, liver immunology, and liver diseases
Wang, R., Tang, R., Li, B., Ma, X., Schnabl, B., & Tilg, H. (2021) · Cellular & Molecular Immunology · doi:10.1038/s41423-020-00592-6 · Cited by 466 · see citing works
The Potential Impact of Probiotics on Human Health: An Update on Their Health-Promoting Properties
Maftei, N.-M., Raileanu, C. R., Balta, A. A., Ambrose, L., Boev, M., Marin, D. B., & Lisa, E. L. (2024) · Microorganisms · doi:10.3390/microorganisms12020234 · Cited by 381 · see citing works
Viral Infections, the Microbiome, and Probiotics
Harper, A., Vijayakumar, V., Ouwehand, A. C., ter Haar, J., Obis, D., Espadaler, J., Binda, S., Desiraju, S., & Day, R. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.596166 · Cited by 177 · see citing works
Zeng, Y., Chen, S., Fu, Y., Wu, W., Chen, T., Chen, J., Yang, B., & Ou, Q. (2020) · Journal of Viral Hepatitis · doi:10.1111/jvh.13216 · Cited by 148 · see citing works
Profiling of tumour-associated microbiota in human hepatocellular carcinoma
Komiyama, S., Yamada, T., Takemura, N., Kokudo, N., Hase, K., & Kawamura, Y. I. (2021) · Scientific Reports · doi:10.1038/s41598-021-89963-1 · Cited by 96 · see citing works
Sarcopenic Obesity in Liver Cirrhosis: Possible Mechanism and Clinical Impact
Nishikawa, H., Enomoto, H., Nishiguchi, S., & Iijima, H. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22041917 · Cited by 56 · see citing works
- Authors
- Inoue, T., Nakayama, J., Moriya, K., Kawaratani, H., Momoda, R., Ito, K., Iio, E., Nojiri, S., Fujiwara, K., Yoneda, M., Yoshiji, H., & Tanaka, Y.
- Affiliations
- Nagoya City University Hospital (JP)
- Kyushu University (JP)
- Nara Medical University (JP)
- Aichi Medical University (JP)
- Nagoya City University (JP)
- Corresponding author
- Tanaka, Yasuhito
- ORCID
- Venue
- Clinical Infectious Diseases
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-05-01
- Volume
- 67
- Issue
- 6
- Pages
- 869-877
- ISSN
- 1058-4838 (ISSN-L)
- 1537-6591
- OpenAlex
- W2801394415
- Cited by
- 183
- References
- 40
- Citations by year
- 2026: 5 · 2025: 19 · 2024: 23 · 2023: 23 · 2022: 26 · 2021: 40 · 2020: 25 · 2019: 16 · 2018: 6
- FWCI
- 7.73
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
- Locations
- Clinical Infectious Diseases (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Japan Agency for Medical Research and Development (JP17fk0210201h0002)
- Ministry of Education, Culture, Sports, Science and Technology (15K09015)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Hepatology › Hepatitis C virus research
- Health Sciences › Medicine › Surgery › Helicobacter pylori-related gastroenterology studies
- Keywords
- hepatitis C virus, gut dysbiosis, gut microbiota, chronic hepatitis C, liver cirrhosis, hepatocellular carcinoma, Clostridiales, Streptococcus, Lactobacillus, Bacteroides, Enterobacteriaceae, Streptococcus viridans, urease gene, fecal pH, hyperammonemia, bacterial diversity, chronic liver disease
- MeSH terms
- Gastrointestinal Microbiome, Aged, Aged, 80 and over, Alanine Transaminase, Bacteria, DNA, Bacterial, Feces, Female, Humans, Male, Middle Aged, RNA, Ribosomal, 16S, Case-Control Studies, Hepacivirus, Disease Progression, Hepatitis C, Chronic, Metagenomics, High-Throughput Nucleotide Sequencing, Dysbiosis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review