Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation
Open accessAbstract
The proliferation of genetically modified mouse models has exposed phenotypic variation between investigators and institutions that has been challenging to control. In many cases, the microbiota is the presumed cause of the variation. Current solutions to account for phenotypic variability include littermate and maternal controls or defined microbial consortia in gnotobiotic mice. In conventionally raised mice, the microbiome is transmitted from the dam. Here we show that microbially driven dichotomous faecal immunoglobulin-A (IgA) levels in wild-type mice within the same facility mimic the effects of chromosomal mutations. We observe in multiple facilities that vertically transmissible bacteria in IgA-low mice dominantly lower faecal IgA levels in IgA-high mice after co-housing or faecal transplantation. In response to injury, IgA-low mice show increased damage that is transferable by faecal transplantation and driven by faecal IgA differences. We find that bacteria from IgA-low mice degrade the secretory component of secretory IgA as well as IgA itself. These data indicate that phenotypic comparisons between mice must take into account the non-chromosomal hereditary variation between different breeders. We propose faecal IgA as one marker of microbial variability and conclude that co-housing and/or faecal transplantation enables analysis of progeny from different dams.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The intestinal microbiota can degrade IgA, which plays a key role in mucosal immunology, and mice with documented degradation of secretory IgA are more susceptible to chemically-induced colitis.
“It has been shown that the intestinal microbiota can degrade IgA, which plays a key role in mucosal immunology, and mice with documented degradation of secretory IgA are more susceptible to chemically-induced colitis.152”
From The emerging roles of bacterial proteases in intestinal diseases (2023) · cites this paper as [152]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
NIH Image to ImageJ: 25 years of image analysis
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012) · Nature Methods · doi:10.1038/nmeth.2089 · Cited by 64,638 · see citing works
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works
Search and clustering orders of magnitude faster than BLAST
Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,617 · see citing works
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192 · see citing works
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C., Turnbaugh, P. J., Fierer, N., & Knight, R. D. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000080107 · Cited by 9,633 · see citing works
McDonald, D. T., Price, M. N., Goodrich, J. K., Nawrocki, E. P., DeSantis, T. Z., Probst, A. J., Andersen, G. L., Knight, R. D., & Hugenholtz, P. (2011) · The ISME Journal · doi:10.1038/ismej.2011.139 · Cited by 5,010 · see citing works
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554 · see citing works
Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis
Rakoff-Nahoum, S., Paglino, J., Eslami-Varzaneh, F., Edberg, S., & Medzhitov, R. (2004) · Cell · doi:10.1016/j.cell.2004.07.002 · Cited by 4,251 · see citing works
Interactions Between the Microbiota and the Immune System
Hooper, L. V., Littman, D. R., & Macpherson, A. J. (2012) · Science · doi:10.1126/science.1223490 · Cited by 4,173 · see citing works
Unravelling the effects of the environment and host genotype on the gut microbiome
Spor, A., Koren, O., & Ley, R. (2011) · Nature Reviews Microbiology · doi:10.1038/nrmicro2540 · Cited by 1,509 · see citing works
Microbiota regulates immune defense against respiratory tract influenza A virus infection
Ichinohe, T., Pang, I. K., Kumamoto, Y., Peaper, D. R., Ho, J. H., Murray, T. S., & Iwasaki, A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1019378108 · Cited by 1,502 · see citing works
Proinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitis
Lee, Y. K., Menezes, J. S., Umesaki, Y., & Mazmanian, S. K. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000082107 · Cited by 1,323 · see citing works
Cadwell, K., Patel, K., Maloney, N. S., Liu, T., Ng, A., Storer, C. E., Head, R. D., Xavier, R. J., Stappenbeck, T. S., & Virgin, H. W. (2010) · Cell · doi:10.1016/j.cell.2010.05.009 · Cited by 897 · see citing works
Self-citationIn vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture
Miyoshi, H., & Stappenbeck, T. S. (2013) · Nature Protocols · doi:10.1038/nprot.2013.153 · Cited by 724 · see citing works
Self-citationWnt5a Potentiates TGF-β Signaling to Promote Colonic Crypt Regeneration After Tissue Injury
Miyoshi, H., Ajima, R., Luo, C. T., Yamaguchi, T. P., & Stappenbeck, T. S. (2012) · Science · doi:10.1126/science.1223821 · Cited by 470 · see citing works
Self-citationJohansen, F., Pekna, M., Norderhaug, I. N., Haneberg, B., Hietala, M. A., Krajči, P., Betsholtz, C., & Brandtzæg, P. (1999) · The Journal of Experimental Medicine · doi:10.1084/jem.190.7.915 · Cited by 417 · see citing works
Brandtzaeg, P., & Prydz, H. (1984) · Nature · doi:10.1038/311071a0 · Cited by 415 · see citing works
Secretory IgA: Designed for Anti-Microbial Defense
Brandtzæg, P. (2013) · Frontiers in Immunology · doi:10.3389/fimmu.2013.00222 · Cited by 382 · see citing works
Williams, B. L., Hornig, M., Parekh, T., & Lipkin, W. I. (2012) · mBio · doi:10.1128/mbio.00261-11 · Cited by 378 · see citing works
Ubeda, C., Lipuma, L., Gobourne, A., Viale, A., Leiner, I., Equinda, M., Khanin, R., & Pamer, E. G. (2012) · Journal of Experimental Medicine · doi:10.1084/jem.20120504 · Cited by 310 · see citing works
Plaut, A. G., Gilbert, J. V., Artenstein, M. S., & Capra, J. D. (1975) · Science · doi:10.1126/science.810892 · Cited by 274 · see citing works
Moon, C., VanDussen, K. L., Miyoshi, H., & Stappenbeck, T. S. (2013) · Mucosal Immunology · doi:10.1038/mi.2013.98 · Cited by 232 · see citing works
Self-citationLindh, E. (1975) · PubMed · Cited by 228 · see citing works
Lindh, E. (1975) · The Journal of Immunology · doi:10.4049/jimmunol.114.1_part_2.284 · Cited by 213 · see citing works
Proteolytic degradation of exocrine and serum immunoglobulins
Brown, W. R., Newcomb, R. W., & Ishizaka, K. (1970) · Journal of Clinical Investigation · doi:10.1172/jci106354 · Cited by 179 · see citing works
An Antibiotic-Responsive Mouse Model of Fulminant Ulcerative Colitis
Kang, S. S., Bloom, S. M., Norian, L. A., Geske, M. J., Flavell, R. A., Stappenbeck, T. S., & Allen, P. M. (2008) · PLoS Medicine · doi:10.1371/journal.pmed.0050041 · Cited by 118 · see citing works
Self-citationEpithelial‐microbial crosstalk in polymeric Ig receptor deficient mice
Reikvam, D. H., Derrien, M., Islam, R., Erofeev, A. S., Grcic, V., Sandvik, A., Gaustad, P., Meza‐Zepeda, L. A., Jahnsen, F. L., Smidt, H., et al. (2012) · European Journal of Immunology · doi:10.1002/eji.201242543 · Cited by 111 · see citing works
Loomes, L. M., Senior, B. W., & Kerr, M. A. (1990) · Infection and Immunity · doi:10.1128/iai.58.6.1979-1985.1990 · Cited by 87 · see citing works
Wexler, H. M., Reeves, D., Summanen, P., Molitoris, E., Mcteague, M., Duncan, J., Wilson, K. H., & Finegold, S. (1996) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-46-1-252 · Cited by 80 · see citing works
Dynamic interactions between bacteria and immune cells leading to intestinal IgA synthesis
Tsuji, M., Suzuki, K., Kinoshita, K., & Fagarasan, S. (2008) · Seminars in Immunology · doi:10.1016/j.smim.2007.12.003 · Cited by 77 · see citing works
Letran, S. E., Lee, S., Atif, S. M., Flores‐Langarica, A., Uematsu, S., Akira, S., Cunningham, A. F., & McSorley, S. J. (2011) · The Journal of Immunology · doi:10.4049/jimmunol.1003576 · Cited by 75 · see citing works
The need for littermate controls
Holmdahl, R., & MALISSEN, B. (2011) · European Journal of Immunology · doi:10.1002/eji.201142048 · Cited by 72 · see citing works
The Gastrointestinal Frontier: IgA and Viruses
Blutt, S. E., & Conner, M. E. (2013) · Frontiers in Immunology · doi:10.3389/fimmu.2013.00402 · Cited by 66 · see citing works
Murthy, A. K., Dubose, C. N., Banas, J. A., Coalson, J. J., & Arulanandam, B. P. (2006) · Journal of Gastroenterology and Hepatology · doi:10.1111/j.1440-1746.2006.04312.x · Cited by 59 · see citing works
Fujiwara, R., Watanabe, J., & Sonoyama, K. (2007) · British Journal Of Nutrition · doi:10.1017/s0007114507862349 · Cited by 36 · see citing works
Inflammasomes in inflammatory bowel disease pathogenesis
Hao, L.-Y., Liu, X., & Franchi, L. (2013) · Current Opinion in Gastroenterology · doi:10.1097/mog.0b013e32836157a4 · Cited by 18 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Milani, C., Duranti, S., Bottacini, F., Casey, E., Turroni, F., Mahony, J., Belzer, C., Delgado Palacio, S., Arboleya Montes, S., Mancabelli, L., et al. (2017) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00036-17 · Cited by 1,950 · see citing works
The microbiota in adaptive immune homeostasis and disease
Honda, K., & Littman, D. R. (2016) · Nature · doi:10.1038/nature18848 · Cited by 1,846 · see citing works
Dysbiosis and the immune system
Levy, M., Kolodziejczyk, A. A., Thaiss, C. A., & Elinav, E. (2017) · Nature Reviews Immunology · doi:10.1038/nri.2017.7 · Cited by 1,769 · see citing works
Levy, M., Thaiss, C. A., Zeevi, D., Dohnalová, L., Zilberman-Schapira, G., Mahdi, J. A., David, E., Savidor, A., Korem, T., Herzig, Y., et al. (2015) · Cell · doi:10.1016/j.cell.2015.10.048 · Cited by 960 · see citing works
Microbial genes and pathways in inflammatory bowel disease
Schirmer, M., Garner, A., Vlamakis, H. C., & Xavier, R. J. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0213-6 · Cited by 956 · see citing works
Tan, J., McKenzie, C. I., Vuillermin, P., Goverse, G., Vinuesa, C. G., Mebius, R. E., Macia, L., & Mackay, C. R. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.05.047 · Cited by 666 · see citing works
The composition of the zebrafish intestinal microbial community varies across development
Stephens, W. Z., Burns, A. R., Stagaman, K., Wong, S., Rawls, J. F., Guillemin, K. J., & Bohannan, B. J. M. (2015) · The ISME Journal · doi:10.1038/ismej.2015.140 · Cited by 653 · see citing works
Homeostasis of the gut barrier and potential biomarkers
Wells, J. M., Brummer, R. J., Derrien, M., MacDonald, T. T., Troost, F. J., Cani, P. D., Théodorou, V., Dekker, J. P., Méheust, A., de Vos, W. M., et al. (2016) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00048.2015 · Cited by 616 · see citing works
Innate and Adaptive Humoral Responses Coat Distinct Commensal Bacteria with Immunoglobulin A
Bunker, J. J., Flynn, T. M., Koval, J., Shaw, D. G., Meisel, M., McDonald, B. D., Ishizuka, I. E., Dent, A. L., Wilson, P. C., Jabrì, B., et al. (2015) · Immunity · doi:10.1016/j.immuni.2015.08.007 · Cited by 557 · see citing works
Gonçalves, P., Araújo, J. R., & Santo, J. P. D. (2018) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izx029 · Cited by 396 · see citing works
Karl, J. P., Margolis, L. M., Madslien, E. H., Murphy, N. E., Castellani, J. W., Gundersen, Y., Hoke, A. V., Levangie, M. W., Kumar, R., Chakraborty, N., et al. (2017) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00066.2017 · Cited by 373 · see citing works
Partners in Leaky Gut Syndrome: Intestinal Dysbiosis and Autoimmunity
Kinashi, Y., & Hase, K. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.673708 · Cited by 362 · see citing works
Gerassy-Vainberg, S., Blatt, A., Danin‐Poleg, Y., Gershovich, K., Sabo, E., Nevelsky, A., Daniel, S., Dahan, A., Ziv, O., Dheer, R., et al. (2017) · Gut · doi:10.1136/gutjnl-2017-313789 · Cited by 321 · see citing works
Maternal IgG and IgA Antibodies Dampen Mucosal T Helper Cell Responses in Early Life
Koch, M. A., Reiner, G. L., Lugo, K. A., Kreuk, L. S. M., Stanbery, A. G., Ansaldo, E., Seher, T. D., Ludington, W. B., & Barton, G. M. (2016) · Cell · doi:10.1016/j.cell.2016.04.055 · Cited by 315 · see citing works
Gut Microbiota Regulation of T Cells During Inflammation and Autoimmunity
Brown, E., Kenny, D. J., & Xavier, R. J. (2019) · Annual Review of Immunology · doi:10.1146/annurev-immunol-042718-041841 · Cited by 310 · see citing works
Distinct microbial and immune niches of the human colon
James, K. R., Gomes, T., Elmentaite, R., Kumar, N., Gulliver, E. L., King, H. W., Stares, M. D., Bareham, B. R., Ferdinand, J. R., Petrova, V. N., et al. (2020) · Nature Immunology · doi:10.1038/s41590-020-0602-z · Cited by 301 · see citing works
Genetics and Pathogenesis of Inflammatory Bowel Disease
Liu, T.-C., & Stappenbeck, T. S. (2016) · Annual Review of Pathology: Mechanisms of Disease · doi:10.1146/annurev-pathol-012615-044152 · Cited by 289 · see citing works
Self-citationIgA Function in Relation to the Intestinal Microbiota
Macpherson, A. J., Yılmaz, B., Limenitakis, J. P., & Ganal-Vonarburg, S. C. (2018) · Annual Review of Immunology · doi:10.1146/annurev-immunol-042617-053238 · Cited by 291 · see citing works
An integrative view of microbiome-host interactions in inflammatory bowel diseases
Wlodarska, M., Kostic, A. D., & Xavier, R. J. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.008 · Cited by 287 · see citing works
Fransen, F., Zagato, E., Mazzini, E., Fosso, B., Manzari, C., Aidy, S. E., Chiavelli, A., D’Erchia, A. M., Sethi, M. K., Pabst, O., et al. (2015) · Immunity · doi:10.1016/j.immuni.2015.08.011 · Cited by 284 · see citing works
The impacts of natural polysaccharides on intestinal microbiota and immune responses – a review
Tang, C., Ding, R., Sun, J. G., Liu, J., Kan, J., & Jin, C. (2019) · Food & Function · doi:10.1039/c8fo01946k · Cited by 281 · see citing works
A metagenomic study of the gut microbiome in Behcet’s disease
Ye, Z., Zhang, N., Wu, C., Zhang, X., Wang, Q., Huang, X., Du, L., Cao, Q., Tang, J., Zhou, C., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0520-6 · Cited by 275 · see citing works
Fang, Z., Pan, T., Li, L., Wang, H., Zhu, J., Zhang, H., Zhao, J., Chen, W., & Lu, W. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2044723 · Cited by 273 · see citing works
Microbes vs. chemistry in the origin of the anaerobic gut lumen
Friedman, E. S., Bittinger, K. L., Esipova, T. V., Hou, L., Chau, L., Jiang, J., Mesaros, C., Lund, P. J., Liang, X., FitzGerald, G. A., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1718635115 · Cited by 272 · see citing works
Accounting for reciprocal host–microbiome interactions in experimental science
Stappenbeck, T. S., & Virgin, H. W. (2016) · Nature · doi:10.1038/nature18285 · Cited by 270 · see citing works
Self-citationDietary Fibers from Fruits and Vegetables and Their Health Benefits via Modulation of Gut Microbiota
Cui, J., Lian, Y., Zhao, C., Du, H., Han, Y., Gao, W. Y., Xiao, H., & Zheng, J. (2019) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12489 · Cited by 243 · see citing works
Transkingdom control of viral infection and immunity in the mammalian intestine
Pfeiffer, J. K., & Virgin, H. W. (2016) · Science · doi:10.1126/science.aad5872 · Cited by 240 · see citing works
Self-citationThe microbiome and autoimmunity: a paradigm from the gut–liver axis
Li, B., Selmi, C. F., Tang, R., Gershwin, M. E., & Ma, X. (2018) · Cellular and Molecular Immunology · doi:10.1038/cmi.2018.7 · Cited by 234 · see citing works
Yang, C., Mogno, I., Contijoch, E. J., Borgerding, J. N., Aggarwala, V., Li, Z., Siu, S., Grasset, E. K., Helmus, D. S., Dubinsky, M. C., et al. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.01.016 · Cited by 221 · see citing works
Sutterella Species, IgA-degrading Bacteria in Ulcerative Colitis.
Kaakoush, N. (2020) · Trends in Microbiology · doi:10.1016/j.tim.2020.02.018 · Cited by 180 · see citing works
Diversity and dynamism of IgA−microbiota interactions
Huus, K. E., Petersen, C., & Finlay, B. B. (2021) · Nature Reviews Immunology · doi:10.1038/s41577-021-00506-1 · Cited by 198 · see citing works
Wang, S., Martins, R., Sullivan, M. C., Friedman, E. S., Misic, A. M., El‐Fahmawi, A., Martinis, E. C. P. D., O’Brien, K. M., Chen, Y., Bradley, C. W., et al. (2019) · Microbiome · doi:10.1186/s40168-019-0740-4 · Cited by 200 · see citing works
Life history and eco‐evolutionary dynamics in light of the gut microbiota
Macke, E., Tasiemski, A., Massol, F., Callens, M., & Decaestecker, E. (2016) · Oikos · doi:10.1111/oik.03900 · Cited by 193 · see citing works
Dance to the Tune of Life: Biological Relativity
Noble, D. (2017) · Cited by 195 · see citing works
Tang, C., Sun, J. G., Zhou, B., Jin, C., Liu, J., Kan, J., Qian, C., & Zhang, N. (2017) · Food & Function · doi:10.1039/c7fo01302g · Cited by 187 · see citing works
Munyaka, P. M., Eissa, N., Bernstein, C. N., Khafipour, E., & Ghia, J. (2015) · PLoS ONE · doi:10.1371/journal.pone.0142536 · Cited by 183 · see citing works
An Immunologic Mode of Multigenerational Transmission Governs a Gut Treg Setpoint
Ramanan, D., Sefik, E., Galván-Peña, S., Wu, M., Yang, L., Yang, Z., Kostic, A. D., Golovkina, T. V., Kasper, D. L., Mathis, D. J., et al. (2020) · Cell · doi:10.1016/j.cell.2020.04.030 · Cited by 173 · see citing works
IL-33 regulates the IgA-microbiota axis to restrain IL-1α–dependent colitis and tumorigenesis
Malik, A., Sharma, D., Zhu, Q., Karki, R., Guy, C. S., Vogel, P., & Kanneganti, T. (2016) · Journal of Clinical Investigation · doi:10.1172/jci88625 · Cited by 176 · see citing works
Liu, T., Kern, J. T., Jain, U., Sonnek, N. M., Xiong, S., Simpson, K. F., VanDussen, K. L., Winkler, E. S., Haritunians, T., Malique, A., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.04.004 · Cited by 173 · see citing works
Self-citationIntrinsic Defense Mechanisms of the Intestinal Epithelium
Ramanan, D., & Cadwell, K. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.03.003 · Cited by 153 · see citing works
Gut Microbiota Modulation on Intestinal Mucosal Adaptive Immunity
Wang, L., Zhu, L., & Qin, S. (2019) · Journal of Immunology Research · doi:10.1155/2019/4735040 · Cited by 154 · see citing works
Ma, N., Zhang, J., Reiter, R. J., & Ma, X. (2019) · Medicinal Research Reviews · doi:10.1002/med.21628 · Cited by 153 · see citing works
The bilateral responsiveness between intestinal microbes and IgA
Macpherson, A. J., Köller, Y., & McCoy, K. D. (2015) · Trends in Immunology · doi:10.1016/j.it.2015.06.006 · Cited by 151 · see citing works
Chen, Y., Yang, B. K., Stanton, C., Ross, R. P., Zhao, J., Zhang, H., & Chen, W. (2021) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.0c06329 · Cited by 150 · see citing works
The gut microbiota and inflammatory bowel diseases
Miyoshi, J., & Chang, E. B. (2016) · Translational research · doi:10.1016/j.trsl.2016.06.002 · Cited by 141 · see citing works
The intestinal epithelium as guardian of gut barrier integrity
Zhang, K., Hornef, M. W., & Dupont, A. (2015) · Cellular Microbiology · doi:10.1111/cmi.12501 · Cited by 138 · see citing works
Nieves, M., Partida‐Rodríguez, O., Laforest‐Lapointe, I., Reynolds, L. A., Brown, E., Valdez-Salazar, A., Morán-Silva, P., Rojas-Velázquez, L., Morien, E., Parfrey, L. W., et al. (2018) · mSystems · doi:10.1128/msystems.00007-18 · Cited by 136 · see citing works
Hypoxia and Mucosal Inflammation
Colgan, S. P., Campbell, E. L., & Kominsky, D. J. (2016) · Annual Review of Pathology Mechanisms of Disease · doi:10.1146/annurev-pathol-012615-044231 · Cited by 133 · see citing works
Microbiota and host immune responses: a love–hate relationship
Tomkovich, S., & Jobin, C. (2015) · Immunology · doi:10.1111/imm.12538 · Cited by 129 · see citing works
Sporadic colorectal cancer: microbial contributors to disease prevention, development and therapy
Drewes, J. L., Housseau, F., & Sears, C. L. (2016) · British Journal of Cancer · doi:10.1038/bjc.2016.189 · Cited by 121 · see citing works
Selvanantham, T., Lin, Q., Guo, C. X., Surendra, A., Fiévé, S., Escalante, N. K., Guttman, D. S., Streutker, C., Robertson, S. J., Philpott, D. J., et al. (2016) · The Journal of Immunology · doi:10.4049/jimmunol.1601410 · Cited by 121 · see citing works
Interactions between host genetics and gut microbiota determine susceptibility to CNS autoimmunity
Montgomery, T. L., Künstner, A., Kennedy, J. J., Fang, Q., Asarian, L., Culp‐Hill, R., D’Alessandro, A., Teuscher, C., Busch, H. S., & Krementsov, D. N. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2002817117 · Cited by 117 · see citing works
Composition and diverse differences of intestinal microbiota in ulcerative colitis patients
Zhu, S., Han, M., Liu, S., Fan, L., Shi, H., & Li, P. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.953962 · Cited by 117 · see citing works
Xu, H., Huang, W., Hou, Q., Kwok, L., Wuri, L., Wang, Y., Ma, H., Sun, Z., & Zhang, H. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.00666 · Cited by 107 · see citing works
Commensal-bacteria-derived butyrate promotes the T-cell-independent IgA response in the colon
Isobe, J., Maeda, S., Obata, Y., Iizuka, K., Nakamura, Y., Fujimura, Y., Kimizuka, T., Hattori, K., Kim, Y., Morita, T., et al. (2019) · International Immunology · doi:10.1093/intimm/dxz078 · Cited by 105 · see citing works
Ingle, H., Lee, S., Ai, T. L., Orvedahl, A., Rodgers, R., Zhao, G., Sullender, M. E., Peterson, S. T., Locke, M. C., Liu, T., et al. (2019) · Nature Microbiology · doi:10.1038/s41564-019-0416-7 · Cited by 104 · see citing works
Self-citationNakajima, A., Sasaki, T., Itoh, K., Kitahara, T., Takema, Y., Hiramatsu, K., Ishikawa, D., Shibuya, T., Kobayashi, O., Osada, T., et al. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.00405-20 · Cited by 104 · see citing works
The gut microbiota posttranslationally modifies IgA1 in autoimmune glomerulonephritis
Gleeson, P. J., Benech, N., Chemouny, J., Metallinou, E. T., Berthelot, L., da Silva, J., Bex-Coudrat, J., Boedec, E., Canesi, F., Bounaix, C., et al. (2024) · Science Translational Medicine · doi:10.1126/scitranslmed.adl6149 · Cited by 99 · see citing works
Defensive Mutualism Rescues NADPH Oxidase Inactivation in Gut Infection
Pîrcălăbioru, G. G., Aviello, G., Kubica, M., Zhdanov, A. V., Paclet, M., Brennan, L., Hertzberger, R. Y., Papkovsky, D. B., Bourke, B., & Knaus, U. G. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.04.007 · Cited by 98 · see citing works
Cognition, Information Fields and Hologenomic Entanglement: Evolution in Light and Shadow
Miller, W. B. (2016) · Biology · doi:10.3390/biology5020021 · Cited by 97 · see citing works
The emerging roles of bacterial proteases in intestinal diseases
Caminero, A., Guzman, M., Libertucci, J., & Lomax, A. E. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2181922 · Cited by 92 · see citing works
Catron, T. R., Keely, S. P., Brinkman, N. E., Zurlinden, T. J., Wood, C. E., Wright, J., Phelps, D. W., Wheaton, E. A., Kvasnicka, A., Gaballah, S., et al. (2018) · Toxicological Sciences · doi:10.1093/toxsci/kfy261 · Cited by 87 · see citing works
Beller, A. V., Kruglov, A., Durek, P., von Goetze, V., Werner, K., Heinz, G. A., Ninnemann, J., Lehmann, K., Maier, R., Hoffmann, U., et al. (2020) · European Journal of Immunology · doi:10.1002/eji.201948474 · Cited by 88 · see citing works
Glutamine-Induced Secretion of Intestinal Secretory Immunoglobulin A: A Mechanistic Perspective
Ren, W., Wang, K., Yin, J., Chen, S., Liu, G., Tan, B., Wu, G., Bazer, F. W., Peng, Y., & Yin, Y. (2016) · Frontiers in Immunology · doi:10.3389/fimmu.2016.00503 · Cited by 85 · see citing works
Lynch, J. P., Werder, R. B., Loh, Z., Sikder, M. A. A., Curren, B. F., Zhang, V., Rogers, M. J., Lane, K., Simpson, J., Mazzone, S. B., et al. (2017) · The Journal of Experimental Medicine · doi:10.1084/jem.20170298 · Cited by 82 · see citing works
Interaction between smoking and ATG16L1T300A triggers Paneth cell defects in Crohn’s disease
Liu, T., Kern, J. T., VanDussen, K. L., Xiong, S., Kaiko, G. E., Wilen, C. B., Rajala, M. W., Caruso, R., Holtzman, M. J., Gao, F., et al. (2018) · Journal of Clinical Investigation · doi:10.1172/jci120453 · Cited by 81 · see citing works
Self-citationChallenges in IBD Research: Preclinical Human IBD Mechanisms
Pizarro, T. T., Stappenbeck, T. S., Rieder, F., Rosen, M. J., Colombel, J., Donowitz, M., Towne, J. E., Mazmanian, S. K., Faith, J. J., Hodin, R. A., et al. (2019) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izz075 · Cited by 80 · see citing works
Self-citationConrey, P. E., Denu, L., O’Boyle, K. C., Rozich, I., Green, J., Maslanka, J. R., Lubin, J., Duranova, T., Haltzman, B. L., Gianchetti, L., et al. (2023) · Science Immunology · doi:10.1126/sciimmunol.ade2335 · Cited by 81 · see citing works
The gut microbiome-immune axis as a target for nutrition-mediated modulation of food allergy
Wang, Z., Zhong, J., Meng, X., Gao, J., Li, H., Sun, J., Li, X., & Chen, H. (2021) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2021.05.021 · Cited by 79 · see citing works
High-throughput mouse phenomics for characterizing mammalian gene function
Brown, S. D. M., Holmes, C. C., Mallon, A., Meehan, T. F., Smedley, D. P., & Wells, S. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0005-2 · Cited by 77 · see citing works
Immunoglobulin A and liver diseases
Inamine, T., & Schnabl, B. (2018) · Journal of Gastroenterology · doi:10.1007/s00535-017-1400-8 · Cited by 76 · see citing works
Mother-newborn separation at birth in hospitals: A possible risk for neurodevelopmental disorders?
Császár-Nagy, N., & Bókkon, I. (2017) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2017.08.013 · Cited by 73 · see citing works
Miller, P. G., Bonn, M. B., Franklin, C. L., Ericsson, A. C., & McKarns, S. C. (2015) · The Journal of Immunology · doi:10.4049/jimmunol.1501664 · Cited by 71 · see citing works
Jang, K. K., Heaney, T., London, M., Ding, Y., Putzel, G., Yeung, F., Ercelen, D., Chen, Y.-H., Axelrad, J., Gurunathan, S., et al. (2023) · Cell Host & Microbe · doi:10.1016/j.chom.2023.08.002 · Cited by 70 · see citing works
Miclotte, L., Callewaert, C., Paepe, K. D., Rymenans, L., Raes, J., Rajković, A., Camp, J. V., & de Wiele, T. V. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.577474 · Cited by 70 · see citing works
Tissue adaptation: Implications for gut immunity and tolerance
Faria, A. M. C., Reis, B. S., & Mucida, D. (2017) · The Journal of Experimental Medicine · doi:10.1084/jem.20162014 · Cited by 67 · see citing works
Epithelial wound healing in inflammatory bowel diseases: the next therapeutic frontier
Liu, C. Y., Cham, C. M., & Chang, E. B. (2021) · Translational research · doi:10.1016/j.trsl.2021.06.001 · Cited by 69 · see citing works
Maintaining and Monitoring the Defined Microbiota Status of Gnotobiotic Rodents
Nicklas, W., Keubler, L. M., & Bleich, A. (2015) · ILAR Journal · doi:10.1093/ilar/ilv029 · Cited by 66 · see citing works
Miyoshi, J., Leone, V., Nobutani, K., Musch, M. W., Martinez, K., Wang, Y., Miyoshi, S., Bobe, A. M., Eren, A. M., & Chang, E. B. (2018) · PeerJ · doi:10.7717/peerj.5166 · Cited by 65 · see citing works
Schierová, D., Březina, J., Mrázek, J., Fliegerova, K. O., Kvasnová, S., Bajer, L., & Drastich, P. (2020) · Cells · doi:10.3390/cells9102283 · Cited by 67 · see citing works
In-vivo biotransformation of citrus functional components and their effects on health
Karn, A., Zhao, C., Yang, F., Cui, J., Gao, Z., Wang, M., Wang, F., Xiao, H., & Zheng, J. (2020) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2020.1746234 · Cited by 66 · see citing works
Depletion of dietary aryl hydrocarbon receptor ligands alters microbiota composition and function
Brawner, K. M., Yeramilli, V. A., Duck, L. W., Van Der Pol, W., Smythies, L. E., Morrow, C. D., Elson, C. O., & Martin, C. A. (2019) · Scientific Reports · doi:10.1038/s41598-019-51194-w · Cited by 64 · see citing works
The Eukaryotic Microbiome: Origins and Implications for Fetal and Neonatal Life
Miller, W. B. (2016) · Frontiers in Pediatrics · doi:10.3389/fped.2016.00096 · Cited by 65 · see citing works
Osteoprotegerin-dependent M cell self-regulation balances gut infection and immunity
Kimura, S., Nakamura, Y., Kobayashi, N., Shiroguchi, K., Kawakami, E., Mutoh, M., Takahashi‐Iwanaga, H., Yamada, T., Hisamoto, M., Nakamura, M., et al. (2020) · Nature Communications · doi:10.1038/s41467-019-13883-y · Cited by 62 · see citing works
Yi, Y., Lu, W., Shen, L., Wu, Y. F., & Zhang, Z. (2023) · Experimental Hematology and Oncology · doi:10.1186/s40164-023-00410-5 · Cited by 62 · see citing works
Zhang, Y., Zhang, B., Dong, L., & Chang, P. (2018) · Advances in Nutrition · doi:10.1093/advances/nmy076 · Cited by 61 · see citing works
Salameh, M. A., Burney, Z. A., Mhaimeed, N., Laswi, I., Yousri, N. A., Bendriss, G., & Zakaria, D. (2019) · Scandinavian Journal of Immunology · doi:10.1111/sji.12855 · Cited by 62 · see citing works
Emerging functions of tissue-resident eosinophils
Gurtner, A., Crepaz, D., & Arnold, I. C. (2023) · The Journal of Experimental Medicine · doi:10.1084/jem.20221435 · Cited by 64 · see citing works
Fantastic IgA plasma cells and where to find them
Isho, B., Florescu, A., Wang, A. A., & Gommerman, J. (2021) · Immunological Reviews · doi:10.1111/imr.12980 · Cited by 54 · see citing works
miRNA-Based Potential Biomarkers and New Molecular Insights in Ulcerative Colitis
Zhou, J., Jialing, L., Gao, Y., Shen, L., Li, S., & Chen, S. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.707776 · Cited by 60 · see citing works
Guardians of the oral and nasopharyngeal galaxy: IgA and protection against SARS‐CoV ‐2 infection*
Sheikh‐Mohamed, S., Sanders, E. C., Gommerman, J. L., & Tal, M. C. (2022) · Immunological Reviews · doi:10.1111/imr.13118 · Cited by 57 · see citing works
Fang, X., Liu, H., Du, Y., Jiang, L., Gao, F., Wang, Z., Chi, Z., Shi, B., & Zhao, X. (2024) · Research · doi:10.34133/research.0415 · Cited by 56 · see citing works
Exploring the microbiome in health and disease
Scotti, E., Boué, S., Sasso, G. L., Zanetti, F., Belcastro, V., Poussin, C., Sierro, N., Battey, J. N. D., Gimalac, A., Ivanov, N. V., et al. (2017) · Toxicology Research and Application · doi:10.1177/2397847317741884 · Cited by 55 · see citing works
Investigating a holobiont: Microbiota perturbations and transkingdom networks
Greer, R. L., Dong, X., Morgun, A., & Shulzhenko, N. (2016) · Gut Microbes · doi:10.1080/19490976.2015.1128625 · Cited by 53 · see citing works
Tian, T., Zhao, Y., Yang, Y., Wang, T., Jin, S., Guo, J., & Liu, Z. (2020) · PubMed Central · Cited by 52 · see citing works
Cortés, A., Wills, J., Su, X.-P., Hewitt, R. E., Robertson, J., Scotti, R., Price, D., Bartley, Y., McNeilly, T., Krause, L., et al. (2019) · Microbiome · doi:10.1186/s40168-020-00818-9 · Cited by 45 · see citing works
Distinct B cell subsets in Peyer’s patches convey probiotic effects by Limosilactobacillus reuteri
Liu, H., Giraud, A., Seignez, C., Ahl, D., Guo, F., Sedin, J., Waldén, T. B., Oh, J., van Pijkeren, J. P., Holm, L. P., et al. (2021) · Microbiome · doi:10.1186/s40168-021-01128-4 · Cited by 51 · see citing works
The microbiome and cognitive aging: a review of mechanisms
Komanduri, M., Gondalia, S. V., Scholey, A. B., & Stough, C. K. K. (2019) · Psychopharmacology · doi:10.1007/s00213-019-05231-1 · Cited by 48 · see citing works
Li, Y., Ye, Z., Zhu, J., Fang, S., Meng, L., & Zhou, C. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.844335 · Cited by 45 · see citing works
Non-Random Genome Editing and Natural Cellular Engineering in Cognition-Based Evolution
Miller, W. B., Enguita, F. J., & Leitão, A. L. (2021) · Cells · doi:10.3390/cells10051125 · Cited by 47 · see citing works
- Authors
- Moon, C., Baldridge, M. T., Wallace, M. A., Burnham, C.-A. D., Virgin, H. W., & Stappenbeck, T. S.
- Affiliations
- Washington University in St. Louis (US)
- Corresponding author
- Virgin, Herbert W.
- Stappenbeck, Thaddeus S.
- ORCID
- Venue
- Nature
- Published
- 2015-02-16
- Volume
- 521
- Issue
- 7550
- Pages
- 90-93
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC4425643
- OpenAlex
- W2086224292
- Cited by
- 268
- References
- 36
- Citations by year
- 2026: 9 · 2025: 15 · 2024: 24 · 2023: 22 · 2022: 18 · 2021: 37 · 2020: 29 · 2019: 27 · 2018: 24 · 2017: 21 · 2016: 28 · 2015: 13
- FWCI
- 12.44
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- National Institutes of Health (R01OD011170)
- National Cancer Institute (T32CA009547)
- National Institute of Allergy and Infectious Diseases (AI08488702, T32AI007163)
- National Institute of Diabetes and Digestive and Kidney Diseases (DK7161907, R01DK071619, R01DK097079, R01DK101354, P30DK052574)
- National Institute of Arthritis and Musculoskeletal and Skin Diseases (P30AR048335)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Inflammatory Bowel Disease
- Keywords
- vertical transmission, gut microbiota, phenotypic variability, wild-type mice, cohousing, secretory component, experimental replication, inter-laboratory variability, injury response
- MeSH terms
- Ampicillin, Anaerobiosis, Animals, Feces, Female, Immunoglobulin A, Immunoglobulin A, Secretory, Male, Mutation, Phenotype, Secretory Component, Reproducibility of Results, Biomarkers, Chromosomes, Mammalian, Mice, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review