Reparative inflammation takes charge of tissue regeneration
Open accessAbstract
Inflammation underlies many chronic and degenerative diseases, but it also mitigates infections, clears damaged cells and initiates tissue repair. Many of the mechanisms that link inflammation to damage repair and regeneration in mammals are conserved in lower organisms, indicating that it is an evolutionarily important process. Recent insights have shed light on the cellular and molecular processes through which conventional inflammatory cytokines and Wnt factors control mammalian tissue repair and regeneration. This is particularly important for regeneration in the gastrointestinal system, especially for intestine and liver tissues in which aberrant and deregulated repair results in severe pathologies.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
While sterile inflammation is common in injuries and is often involved in tissue regeneration, results suggest a concept that proinflammatory signaling may directly induce transcription of progenitor-related genes for injury-induced cell dedifferentiation in mammals.
“While sterile inflammation is common in injuries and is often involved in tissue regeneration, 35 our results suggest a concept that proinflammatory signaling may directly induce the transcription of progenitor-related genes for injury-induced cell dedifferentiation in mammals.”
From Kupffer-cell-derived IL-6 is repurposed for hepatocyte dedifferentiation via activating progenitor genes from injury-specific enhancers (2023) · cites this paper as [35]
Sterile inflammation is common in injuries and is often involved in tissue regeneration.
“While sterile inflammation is common in injuries and is often involved in tissue regeneration, 35”
From Kupffer-cell-derived IL-6 is repurposed for hepatocyte dedifferentiation via activating progenitor genes from injury-specific enhancers (2023) · cites this paper as [35]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The gut microbiota--masters of host development and physiology
Sommer, F., & Bäckhed, F. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro2974 · Cited by 3,681 · see citing works
Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts
Sato, T., van Es, J. H., Snippert, H. J., Stange, D. E., Vries, R. G., van den Born, M., Barker, N., Shroyer, N. F., van de Wetering, M., & Clevers, H. (2011) · Nature · doi:10.1038/nature09637 · Cited by 2,510 · see citing works
Long-Term Culture of Genome-Stable Bipotent Stem Cells from Adult Human Liver
Huch, M., Gehart, H., van Boxtel, R., Hamer, K., Blokzijl, F., Verstegen, M. M. A., Ellis, E., van Wenum, M., Fuchs, S. A., de Ligt, J., et al. (2015) · Cell · doi:10.1016/j.cell.2014.11.050 · Cited by 1,619 · see citing works
Self-citationLiver Failure and Defective Hepatocyte Regeneration in Interleukin-6-Deficient Mice
Cressman, D. E., Greenbaum, L. E., DeAngelis, R. A., Ciliberto, G., Furth, E. E., Poli, V., & Taub, R. (1996) · Science · doi:10.1126/science.274.5291.1379 · Cited by 1,536 · see citing works
Functional Specialization of Interleukin-17 Family Members
Iwakura, Y., Ishigame, H., Saijo, S., & Nakae, S. (2011) · Immunity · doi:10.1016/j.immuni.2011.02.012 · Cited by 1,289 · see citing works
Yamada, Y., Kirillova, I., Peschon, J. J., & Fausto, N. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.4.1441 · Cited by 944 · see citing works
Initiation and perpetuation of <scp>NLRP</scp> 3 inflammasome activation and assembly
Elliott, E. I., & Sutterwala, F. S. (2015) · Immunological Reviews · doi:10.1111/imr.12286 · Cited by 821 · see citing works
Intestinal label-retaining cells are secretory precursors expressing Lgr5
Buczacki, S. J. A., Zecchini, H. I., Nicholson, A. M., Russell, R., Vermeulen, L., Kemp, R., & Winton, D. J. (2013) · Nature · doi:10.1038/nature11965 · Cited by 761 · see citing works
Chang, L., Kamata, H., Solinas, G., Luo, J.-L., Maeda, S., Venuprasad, K., Liu, Y.-C., & Karin, M. (2006) · Cell · doi:10.1016/j.cell.2006.01.021 · Cited by 706 · see citing works
Self-citationSelf-renewing diploid Axin2+ cells fuel homeostatic renewal of the liver
Wang, B., Zhao, L., Fish, M., Logan, C. Y., & Nusse, R. (2015) · Nature · doi:10.1038/nature14863 · Cited by 674 · see citing works
ER Stress Cooperates with Hypernutrition to Trigger TNF-Dependent Spontaneous HCC Development
Nakagawa, H., Umemura, A., Taniguchi, K., Font-Burgada, J., Dhar, D., Ogata, H., Zhong, Z., Valasek, M. A., Seki, E., Hidalgo, J., et al. (2014) · Cancer Cell · doi:10.1016/j.ccr.2014.07.001 · Cited by 525 · see citing works
Self-citationAntibodies to tumor necrosis factor-alpha inhibit liver regeneration after partial hepatectomy
Akerman, P., Cote, P., Yang, S. Q., McClain, C., Nelson, S., Bagby, G. J., & Diehl, A. M. (1992) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.1992.263.4.g579 · Cited by 401 · see citing works
Tschaharganeh, D. F., Chen, X., Latzko, P., Malz, M., Gaida, M. M., Felix, K., Ladu, S., Singer, S., Pinna, F., Gretz, N., et al. (2013) · Gastroenterology · doi:10.1053/j.gastro.2013.02.009 · Cited by 326 · see citing works
Song, X., Zhu, S., Shi, P., Liu, Y., Shi, Y., Levin, S. D., & Qian, Y. (2011) · Nature Immunology · doi:10.1038/ni.2155 · Cited by 312 · see citing works
IKKβ Is Required for Prevention of Apoptosis Mediated by Cell-Bound but Not by Circulating TNFα
Maeda, S., Chang, L., Li, Z.-W., Luo, J.-L., Leffert, H., & Karin, M. (2003) · Immunity · doi:10.1016/s1074-7613(03)00301-7 · Cited by 286 · see citing works
Self-citationThe Inflammation–Fibrosis Link? A Jekyll and Hyde Role for Blood Cells during Wound Repair
Stramer, B. M., Mori, R., & Martin, P. (2007) · Journal of Investigative Dermatology · doi:10.1038/sj.jid.5700811 · Cited by 251 · see citing works
c-Jun/AP-1 controls liver regeneration by repressing p53/p21 and p38 MAPK activity
Stepniak, E., Ricci, R., Eferl, R., Sumara, G., Sumara, I., Rath, M., Hui, L., & Wagner, E. F. (2006) · Genes & Development · doi:10.1101/gad.390506 · Cited by 232 · see citing works
Moh, A., Iwamoto, Y., Chai, G.-X., Zhang, S. S.-M., Kano, A., Yang, D. D., Zhang, W., Wang, J., Jacoby, J. J., Gao, B., et al. (2007) · Laboratory Investigation · doi:10.1038/labinvest.3700630 · Cited by 147 · see citing works
Flagged first, then by citations
Research works printed but not linked: 123
- [1]Clevers H The intestinal crypt, a prototype stem cell compartment Cell 2013 154 274 284 23870119
- [3]Durand A Functional intestinal stem cells after Paneth cell ablation induced by the loss of transcription factor Math1 (Atoh1) Proc. Natl Acad. Sci. USA 2012 109 8965 8970 22586121 PMC3384132
- [4]Yang J β-catenin signaling in murine liver zonation and regeneration: a Wnt-Wnt situation! Hepatology 2014 60 964 976 24700412 PMC4139486
- [6]Stanger BZ Cellular homeostasis and repair in the mammalian liver Annu. Rev. Physiol 2015 77 179 200 25668020 PMC5830102
- [7]Sun G Irvine KD Control of growth during regeneration Curr. Top. Dev. Biol 2014 108 95 120 24512707
- [8]Monga SP Role and regulation of β-catenin signaling during physiological liver growth Gene Expr 2014 16 51 62 24801166 PMC4410358
- [9]Hu M Wnt/β-catenin signaling in murine hepatic transit amplifying progenitor cells Gastroenterology 2007 133 1579 1591 17983805
- [10]Farber E Similarities in the sequence of early histological changes induced in the liver of the rat by ethionine, 2-acetylamino-fluorene, and 3?-methyl-4-dimethylaminoazobenzene Cancer Res 1956 16 142 148 13293655
- [11]Popper H Kent G Stein R Ductular cell reaction in the liver in hepatic injury J. Mt. Sinai Hosp 1957 24 551 556 13476145
- [12]West NR McCuaig S Franchini F Powrie F Emerging cytokine networks in colorectal cancer Nature Rev. Immunol 2015 15 615 629 26358393
- [13]Grivennikov SI Greten FR Karin M Immunity, inflammation, and cancer Cell 2010 140 883 899 20303878 PMC2866629
- [15]Gurtner GC Werner S Barrandon Y Longaker MT Wound repair and regeneration Nature 2008 453 314 321 18480812
- [16]Panayidou S Apidianakis Y Regenerative inflammation: lessons from Drosophila intestinal epithelium in health and disease Pathogens 2013 2 209 231 25437036 PMC4235722
- [17]Shaukat Z Liu D Gregory S Sterile inflammation in Drosophila Mediators Inflamm 2015 2015 369286 25948885 PMC4408615
- [18]Buchon N Silverman N Cherry S Immunity in Drosophila melanogaster — from microbial recognition to whole-organism physiology Nature Rev. Immunol 2014 14 796 810 25421701 PMC6190593
- [19]Ayyaz A Jasper H Intestinal inflammation and stem cell homeostasis in aging Drosophila melanogaster Front. Cell Infect. Microbiol 2013 3 98 24380076 PMC3863754
- [20]Clevers H Loh KM Nusse R An integral program for tissue renewal and regeneration: Wnt signaling and stem cell control Science 2014 346 1248012 25278615
- [21]Xu N EGFR, Wingless and JAK/STAT signaling cooperatively maintain Drosophila intestinal stem cells Dev. Biol 2011 354 31 43 21440535
- [22]Cordero JB Stefanatos RK Scopelliti A Vidal M Sansom OJ Inducible progenitor-derived Wingless regulates adult midgut regeneration in Drosophila EMBO J 2012 31 3901 3917 22948071 PMC3463851
- [23]Lozupone CA Stombaugh JI Gordon JI Jansson JK Knight R Diversity, stability and resilience of the human gut microbiota Nature 2012 489 220 230 22972295 PMC3577372
- [25]Hooper LV Littman DR Macpherson AJ Interactions between the microbiota and the immune system Science 2012 336 1268 1273 22674334 PMC4420145
- [26]Neu J Walker WA Necrotizing enterocolitis N. Engl. J. Med 2011 364 255 264 21247316 PMC3628622
- [27]Rakoff-Nahoum S Paglino J Eslami-Varzaneh F Edberg S Medzhitov R Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis Cell 2004 118 229 241 15260992 This is one of the first reports to describe the role of TLR4 signalling in control of mucosal homeostasis.
- [28]Neurath MF New targets for mucosal healing and therapy in inflammatory bowel diseases Mucosal Immunol 2014 7 6 19 24084775
- [29]Claud EC Neonatal necrotizing enterocolitis — inflammation, intestinal immaturity. Antiinflamm Antiallergy Agents Med. Chem 2009 8 248 259 PMC2874244 20498729
- [30]Lee WJ Brey PT How microbiomes influence metazoan development: insights from history and Drosophila modeling of gut-microbe interactions Annu. Rev. Cell Dev. Biol 2013 29 571 592 23808845
- [31]Cornell RP Liljequist BL Bartizal KF Depressed liver regeneration after partial hepatectomy of germ-free, athymic and lipopolysaccharide-resistant mice Hepatology 1990 11 916 922 2194922
- [32]Seki E Contribution of Toll-like receptor/myeloid differentiation factor 88 signaling to murine liver regeneration Hepatology 2005 41 443 450 15723296 This is one of the first accounts of the control of liver regeneration by TLR signalling.
- [33]Rayes N Effect of pre- and probiotics on liver regeneration after resection: a randomised, double-blind pilot study Benef. Microbes 2012 3 237 244 22968413
- [34]Taub R Liver regeneration: from myth to mechanism Nature Rev. Mol. Cell Biol 2004 5 836 847 15459664
- [36]DeAngelis RA A complement-IL-4 regulatory circuit controls liver regeneration J. Immunol 2012 188 641 648 22184721 PMC3253144
- [37]Rock KL Latz E Ontiveros F Kono H The sterile inflammatory response Annu. Rev. Immunol 2010 28 321 342 20307211 PMC4315152
- [38]Elliott EI Sutterwala FS Initiation and perpetuation of NLRP3 inflammasome activation and assembly Immunol. Rev 2015 265 35 52 25879282 PMC4400874
- [39]Dupaul-Chicoine J Control of intestinal homeostasis, colitis, and colitis-associated colorectal cancer by the inflammatory caspases Immunity 2010 32 367 378 20226691
- [40]Zaki MH The NLRP3 inflammasome protects against loss of epithelial integrity and mortality during experimental colitis Immunity 2010 32 379 391 20303296 PMC2982187
- [41]Lopetuso LR Chowdhry S Pizarro TT Opposing functions of classic and novel IL-1 family members in gut health and disease Front. Immunol 2013 4 181 23847622 PMC3705591
- [42]Nowarski R Epithelial IL-18 equilibrium controls barrier function in colitis Cell 2015 163 1 13 PMC4943028 26638073
- [43]Stevens LJ Page-McCaw A A secreted MMP is required for re-epithelialization during wound healing Mol. Biol. Cell 2012 23 1068 1079 22262460 PMC3302734
- [44]Chalaris A Critical role of the disintegrin metalloprotease ADAM17 for intestinal inflammation and regeneration in mice J. Exp. Med 2010 207 1617 1624 20603312 PMC2916135
- [45]Scheller J Chalaris A Garbers C Rose-John S ADAM17: a molecular switch to control inflammation and tissue regeneration Trends Immunol 2011 32 380 387 21752713
- [47]Liu ZG Hsu H Goeddel DV Karin M Dissection of TNF receptor 1 effector functions: JNK activation is not linked to apoptosis while NF-κB activation prevents cell death Cell 1996 87 565 576 8898208
- [48]Beg AA Baltimore D An essential role for NF-κB in preventing TNF-α-induced cell death Science 1996 274 782 784 8864118
- [49]Kamata H Reactive oxygen species promote TNFα-induced death and sustained JNK activation by inhibiting MAP kinase phosphatases Cell 2005 120 649 661 15766528
- [50]Marshall KM He S Zhong Z Atkinson C Tomlinson S Dissecting the complement pathway in hepatic injury and regeneration with a novel protective strategy J. Exp. Med 2014 211 1793 1805 25113972 PMC4144741
- [51]Chen LW The two faces of IKK and NF-κB inhibition: prevention of systemic inflammation but increased local injury following intestinal ischemia-reperfusion Nature Med 2003 9 575 581 12692538 This is the first account of the crucial protective and regenerative function of TNF-induced intestinal NF-κB.
- [52]Grivennikov S IL-6 and Stat3 are required for survival of intestinal epithelial cells and development of colitis-associated cancer Cancer Cell 2009 15 103 113 19185845 PMC2667107
- [53]Becker C TGF-β suppresses tumor progression in colon cancer by inhibition of IL-6 trans-signaling Immunity 2004 21 491 501 15485627
- [54]Bohm F Kohler UA Speicher T Werner S Regulation of liver regeneration by growth factors and cytokines EMBO Mol. Med 2010 2 294 305 20652897 PMC3377328
- [56]Yamada Y Webber EM Kirillova I Peschon JJ Fausto N Analysis of liver regeneration in mice lacking type 1 or type 2 tumor necrosis factor receptor: requirement for type 1 but not type 2 receptor Hepatology 1998 28 959 970 9755232
- [58]Ando K Induction of Notch signaling by tumor necrosis factor in rheumatoid synovial fibroblasts Oncogene 2003 22 7796 7803 14586405
- [59]Hilliard VC Frey MR Dempsey PJ Peek RM Jr Polk DB TNF-α converting enzyme-mediated ErbB4 transactivation by TNF promotes colonic epithelial cell survival Am. J. Physiol. Gastrointest. Liver Physiol 2011 301 G338 G346 21617117 PMC3154600
- [60]Anders RA Subudhi SK Wang J Pfeffer K Fu YX Contribution of the lymphotoxin β receptor to liver regeneration J. Immunol 2005 175 1295 1300 16002734
- [61]Garbers C Plasticity and cross-talk of interleukin 6-type cytokines Cytokine Growth Factor Rev 2012 23 85 97 22595692
- [62]Kishimoto T IL-6: from its discovery to clinical applications Int. Immunol 2010 22 347 352 20410258
- [63]Brandl K MyD88 signaling in non-hematopoietic cells protects mice against induced colitis by regulating specific EGF receptor ligands Proc. Natl Acad. Sci. USA 2010 107 19967 19972 21041656 PMC2993336
- [64]Makki N Thiel KW Miller FJ Jr The epidermal growth factor receptor and its ligands in cardiovascular disease Int. J. Mol. Sci 2013 14 20597 20613 24132149 PMC3821633
- [65]Taniguchi K A gp130-Src-YAP module links inflammation to epithelial regeneration Nature 2015 519 57 62 25731159 PMC4447318 This key paper describes the role of gp130-induced, Hippo-independent YAP signalling in epithelial regeneration.
- [66]Nikoopour E Bellemore SM Singh B IL-22, cell regeneration and autoimmunity Cytokine 2015 74 35 42 25467639
- [67]Zheng Y Interleukin-22 mediates early host defense against attaching and effacing bacterial pathogens Nature Med 2008 14 282 289 18264109
- [68]Sugimoto K IL-22 ameliorates intestinal inflammation in a mouse model of ulcerative colitis J. Clin. Invest 2008 118 534 544 18172556 PMC2157567
- [69]Zenewicz LA Interleukin-22 but not interleukin-17 provides protection to hepatocytes during acute liver inflammation Immunity 2007 27 647 659 17919941 PMC2149911 This paper is an important account of the unique regenerative function of IL-22
- [70]Radaeva S Sun R Pan HN Hong F Gao B Interleukin 22 (IL-22) plays a protective role in T cell-mediated murine hepatitis: IL-22 is a survival factor for hepatocytes via STAT3 activation Hepatology 2004 39 1332 1342 15122762
- [71]Pappu R Rutz S Ouyang W Regulation of epithelial immunity by IL-17 family cytokines Trends Immunol 2012 33 343 349 22476048
- [72]Hymowitz SG IL-17s adopt a cystine knot fold: structure and activity of a novel cytokine, IL-17F, and implications for receptor binding EMBO J 2001 20 5332 5341 11574464 PMC125646
- [73]Ely LK Fischer S Garcia KC Structural basis of receptor sharing by interleukin 17 cytokines Nature Immunol 2009 10 1245 1251 19838198 PMC2783927
- [76]Wang K Interleukin-17 receptor a signaling in transformed enterocytes promotes early colorectal tumorigenesis Immunity 2014 41 1052 1063 25526314 PMC4272447
- [78]Sakurai T Maeda S Chang L Karin M Loss of hepatic NF-κB activity enhances chemical hepatocarcinogenesis through sustained c-Jun N-terminal kinase 1 activation Proc. Natl Acad. Sci. USA 2006 103 10544 10551 16807293 PMC1502270
- [80]Papa S Gadd45β promotes hepatocyte survival during liver regeneration in mice by modulating JNK signaling J. Clin. Invest 2008 118 1911 1923 18382767 PMC2276398
- [81]Schwabe RF Brenner DA Mechanisms of liver injury. I. TNF-α-induced liver injury: role of IKK, JNK, and ROS pathways Am. J. Physiol. Gastrointest. Liver Physiol 2006 290 G583 G589 16537970
- [82]Hasselblatt P Rath M Komnenovic V Zatloukal K Wagner EF Hepatocyte survival in acute hepatitis is due to c-Jun/AP-1-dependent expression of inducible nitric oxide synthase Proc. Natl Acad. Sci. USA 2007 104 17105 17110 17940019 PMC2040484
- [83]Seki E Brenner DA Karin M A liver full of JNK: signaling in regulation of cell function and disease pathogenesis, and clinical approaches Gastroenterology 2012 143 307 320 22705006 PMC3523093
- [84]Jiang H Grenley MO Bravo MJ Blumhagen RZ Edgar BA EGFR/Ras/MAPK signaling mediates adult midgut epithelial homeostasis and regeneration in Drosophila Cell Stem Cell 2011 8 84 95 21167805 PMC3021119
- [85]Frey MR Golovin A Polk DB Epidermal growth factor-stimulated intestinal epithelial cell migration requires Src family kinase-dependent p38 MAPK signaling J. Biol. Chem 2004 279 44513 44521 15316018
- [86]Ben-Neriah Y Karin M Inflammation meets cancer, with NF-κB as the matchmaker Nature Immunol 2011 12 715 723 21772280
- [88]Maeda S Kamata H Luo JL Leffert H Karin M IKKβ couples hepatocyte death to cytokine-driven compensatory proliferation that promotes chemical hepatocarcinogenesis Cell 2005 121 977 990 15989949
- [89]Greten FR IKKβ links inflammation and tumorigenesis in a mouse model of colitis-associated cancer Cell 2004 118 285 296 15294155 This is the first account of the crucial tumour-promoting function of NF-κB signalling in intestinal epithelial cells and macrophages.
- [90]Egan LJ IκB-kinaseβ-dependent NF-κB activation provides radioprotection to the intestinal epithelium Proc. Natl Acad. Sci. USA 2004 101 2452 2457 14983030 PMC356971
- [91]Nenci A Epithelial NEMO links innate immunity to chronic intestinal inflammation Nature 2007 446 557 561 17361131
- [92]Eckmann L Opposing functions of IKKβ during acute and chronic intestinal inflammation Proc. Natl Acad. Sci. USA 2008 105 15058 15063 18815378 PMC2567492
- [93]Schwitalla S Intestinal tumorigenesis initiated by dedifferentiation and acquisition of stem-cell-like properties Cell 2013 152 25 38 23273993
- [94]Jiang H Edgar BA Intestinal stem cell function in Drosophila and mice Curr. Opin. Genet. Dev 2012 22 354 360 22608824 PMC3426656
- [95]Ernst M Thiem S Nguyen PM Eissmann M Putoczki TL Epithelial gp130/Stat3 functions: an intestinal signaling node in health and disease Semin. Immunol 2014 26 29 37 24434062
- [96]Kolls JK McCray PB Jr Chan YR Cytokine-mediated regulation of antimicrobial proteins Nature Rev. Immunol 2008 8 829 835 18949018 PMC2901862
- [97]Wittkopf N Activation of intestinal epithelial Stat3 orchestrates tissue defense during gastrointestinal infection PLoS ONE 2015 10 e0118401 25799189 PMC4370566
- [98]Grivennikov SI Karin M Dangerous liaisons: STAT3 and NF-κB collaboration and crosstalk in cancer Cytokine Growth Factor Rev 2010 21 11 19 20018552 PMC2834864
- [99]Bollrath J gp130-mediated Stat3 activation in enterocytes regulates cell survival and cell-cycle progression during colitis-associated tumorigenesis Cancer Cell 2009 15 91 102 19185844
- [100]Anderson CA Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47 Nature Genet 2011 43 246 252 21297633 PMC3084597
- [102]He G Hepatocyte IKKβ/NF-κB inhibits tumor promotion and progression by preventing oxidative stress-driven STAT3 activation Cancer Cell 2010 17 286 297 20227042 PMC2841312
- [103]Johnson R Halder G The two faces of Hippo: targeting the Hippo pathway for regenerative medicine and cancer treatment Nature Rev. Drug Discov 2014 13 63 79 24336504 PMC4167640
- [104]Baddour LM Cha YM Wilson WR Clinical practice. Infections of cardiovascular implantable electronic devices N. Engl. J. Med 2012 367 842 849 22931318
- [105]Zhang J YAP-dependent induction of amphiregulin identifies a non-cell-autonomous component of the Hippo pathway Nature Cell Biol 2009 11 1444 1450 19935651 PMC2819909
- [107]Yu FX Guan KL The Hippo pathway: regulators and regulations Genes Dev 2013 27 355 371 23431053 PMC3589553
- [108]Karpowicz P Perez J Perrimon N The Hippo tumor suppressor pathway regulates intestinal stem cell regeneration Development 2010 137 4135 4145 21098564 PMC2990205
- [109]Ren F Hippo signaling regulates Drosophila intestine stem cell proliferation through multiple pathways Proc. Natl Acad. Sci. USA 2010 107 21064 21069 21078993 PMC3000252
- [110]Shaw RL The Hippo pathway regulates intestinal stem cell proliferation during Drosophila adult midgut regeneration Development 2010 137 4147 4158 21068063 PMC2990206
- [111]Staley BK Irvine KD Warts and Yorkie mediate intestinal regeneration by influencing stem cell proliferation Curr. Biol 2010 20 1580 1587 20727758 PMC2955330
- [112]Zhou D Mst1 and Mst2 protein kinases restrain intestinal stem cell proliferation and colonic tumorigenesis by inhibition of Yes-associated protein (Yap) overabundance Proc. Natl Acad. Sci. USA 2011 108 e1312 e1320 22042863 PMC3241824
- [113]Camargo FD YAP1 increases organ size and expands undifferentiated progenitor cells Curr. Biol 2007 17 2054 2060 17980593
- [114]Cai J The Hippo signaling pathway restricts the oncogenic potential of an intestinal regeneration program Genes Dev 2010 24 2383 2388 21041407 PMC2964748
- [115]Fre S Notch signals control the fate of immature progenitor cells in the intestine Nature 2005 435 964 968 15959516
- [116]Stanger BZ Datar R Murtaugh LC Melton DA Direct regulation of intestinal fate by Notch Proc. Natl Acad. Sci. USA 2005 102 12443 12448 16107537 PMC1194941
- [117]van Es JH Notch/γ-secretase inhibition turns proliferative cells in intestinal crypts and adenomas into goblet cells Nature 2005 435 959 963 15959515 References 115 to 117 describe the crucial role of Notch signalling in the control of stem-cell fate in the mammalian gut.
- [118]Micchelli CA Perrimon N Evidence that stem cells reside in the adult Drosophila midgut epithelium Nature 2006 439 475 479 16340959
- [119]Cordero JB c-Src drives intestinal regeneration and transformation EMBO J 2014 33 1474 1491 24788409 PMC4194090
- [120]Korinek V Depletion of epithelial stem-cell compartments in the small intestine of mice lacking Tcf-4 Nature Genet 1998 19 379 383 9697701
- [121]Liu S Lgr4 gene deficiency increases susceptibility and severity of dextran sodium sulfate-induced inflammatory bowel disease in mice J. Biol. Chem 2013 288 8794 8803 23393138 PMC3610954
- [122]Ashton GH Focal adhesion kinase is required for intestinal regeneration and tumorigenesis downstream of Wnt/c-Myc signaling Dev. Cell 2010 19 259 269 20708588 PMC3291717
- [123]Miyoshi H Ajima R Luo CT Yamaguchi TP Stappenbeck TS Wnt5a potentiates TGF-β signaling to promote colonic crypt regeneration after tissue injury Science 2012 338 108 113 22956684 PMC3706630 This paper is an important account of the key parts played by Wnt and TGFβ in control of intestinal regeneration.
- [124]Clevers HC Bevins CL Paneth cells: maestros of the small intestinal crypts Annu. Rev. Physiol 2013 75 289 311 23398152
- [125]Potten CS Extreme sensitivity of some intestinal crypt cells to X and γ irradiation Nature 1977 269 518 521 909602
- [126]Sangiorgi E Capecchi MR Bmi1 is expressed in vivo in intestinal stem cells Nature Genet 2008 40 915 920 18536716 PMC2906135
- [127]Munoz J The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent ‘+4’ cell markers EMBO J 2012 31 3079 3091 22692129 PMC3400017
- [128]Roche KC SOX9 maintains reserve stem cells and preserves radio-resistance in mouse small intestine Gastroenterology 2015 149 1553 1563 26170137 PMC4709179
- [130]Choi TY Ninov N Stainier DY Shin D Extensive conversion of hepatic biliary epithelial cells to hepatocytes after near total loss of hepatocytes in zebrafish Gastroenterology 2014 146 776 788 24148620 PMC3943869
- [131]Grompe M Liver stem cells, where art thou? Cell Stem Cell 2014 15 257 258 25192457
- [132]Font-Burgada J Hybrid periportal hepatocytes regenerate the injured liver without giving rise to cancer Cell 2015 162 766 779 26276631 PMC4545590 This paper shows that periportal hepatocytes rather than oval cells are responsible for liver regeneration after injury, but do not give rise to cancer.
- [133]Apte U Wnt/β-catenin signaling mediates oval cell response in rodents Hepatology 2008 47 288 295 17929301
- [134]Itoh T Kamiya Y Okabe M Tanaka M Miyajima A Inducible expression of Wnt genes during adult hepatic stem/progenitor cell response FEBS Lett 2009 583 777 781 19174158
- [135]Yang W Wnt/β-catenin signaling contributes to activation of normal and tumorigenic liver progenitor cells Cancer Res 2008 68 4287 4295 18519688
- [136]Huch M In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration Nature 2013 494 247 250 23354049 PMC3634804
- [138]Boulter L Macrophage-derived Wnt opposes Notch signaling to specify hepatic progenitor cell fate in chronic liver disease Nature Med 2012 18 572 579 22388089 PMC3364717
- [139]Park HW Alternative Wnt signaling activates YAP/TAZ Cell 2015 162 780 794 26276632 PMC4538707
- [140]Chung AS An interleukin-17-mediated paracrine network promotes tumor resistance to anti-angiogenic therapy Nature Med 2013 19 1114 1123 23913124
Cited by
Sorted by citations
NF-κB, inflammation, immunity and cancer: coming of age
Taniguchi, K., & Karin, M. (2018) · Nature Reviews Immunology · doi:10.1038/nri.2017.142 · Cited by 2,679 · see citing works
Self-citationNew mitochondrial DNA synthesis enables NLRP3 inflammasome activation
Zhong, Z., Liang, S., Sanchez-Lopez, E., He, F., Shalapour, S., Lin, X.-J., Wong, J., Ding, S., Seki, E., Schnabl, B., et al. (2018) · Nature · doi:10.1038/s41586-018-0372-z · Cited by 1,208 · see citing works
Self-citationYAP/TAZ upstream signals and downstream responses
Totaro, A., Panciera, T., & Piccolo, S. (2018) · Nature Cell Biology · doi:10.1038/s41556-018-0142-z · Cited by 1,086 · see citing works
Xian, H., Watari, K., Sanchez-Lopez, E., Offenberger, J., Onyuru, J., Sampath, H., Ying, W., Hoffman, H. M., Shadel, G. S., & Karin, M. (2022) · Immunity · doi:10.1016/j.immuni.2022.06.007 · Cited by 850 · see citing works
Self-citationGut microbiome and liver diseases
Tilg, H., Cani, P. D., & Mayer, E. A. (2016) · Gut · doi:10.1136/gutjnl-2016-312729 · Cited by 525 · see citing works
Host–microbiota maladaptation in colorectal cancer
Janney, A., Powrie, F., & Mann, E. H. (2020) · Nature · doi:10.1038/s41586-020-2729-3 · Cited by 445 · see citing works
Disease tolerance and immunity in host protection against infection
Soares, M. P., Teixeira, L., & Moita, L. F. (2017) · Nature reviews. Immunology · doi:10.1038/nri.2016.136 · Cited by 376 · see citing works
Organoids in immunological research
Bar-Ephraim, Y. E., Kretzschmar, K., & Clevers, H. (2020) · Nature Reviews Immunology · doi:10.1038/s41577-019-0248-y · Cited by 361 · see citing works
Self-citationFructose stimulated de novo lipogenesis is promoted by inflammation
Todoric, J., Di Caro, G., Reibe, S., Henstridge, D. C., Green, C. R., Vrbanac, A., Ceteci, F., Conche, C., McNulty, R., Shalapour, S., et al. (2020) · Nature Metabolism · doi:10.1038/s42255-020-0261-2 · Cited by 328 · see citing works
Self-citationInflammatory Cytokine TNFα Promotes the Long-Term Expansion of Primary Hepatocytes in 3D Culture
Peng, W. C., Logan, C. Y., Fish, M., Anbarchian, T., Aguisanda, F., Álvarez-Varela, A., Wu, P., Jin, Y., Zhu, J., Li, B., et al. (2018) · Cell · doi:10.1016/j.cell.2018.11.012 · Cited by 331 · see citing works
Tissue Stem Cells: Architects of Their Niches
Fuchs, E., & Blau, H. M. (2020) · Cell Stem Cell · doi:10.1016/j.stem.2020.09.011 · Cited by 332 · see citing works
Rangan, P., Choi, I., Wei, M., Navarrete, G., Guen, E., Brandhorst, S., Enyati, N., Pasia, G., Maesincee, D., Ocon, V., et al. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.02.019 · Cited by 312 · see citing works
Nowarski, R., Jackson, R., & Flavell, R. A. (2017) · Cell · doi:10.1016/j.cell.2016.11.040 · Cited by 191 · see citing works
Axonal Degeneration during Aging and Its Functional Role in Neurodegenerative Disorders
Salvadores, N., Sanhueza, M., Manque, P., & Court, F. A. (2017) · Frontiers in Neuroscience · doi:10.3389/fnins.2017.00451 · Cited by 182 · see citing works
Bent, E. H., Gilbert, L. A., & Hemann, M. T. (2016) · Genes & Development · doi:10.1101/gad.284851.116 · Cited by 179 · see citing works
Li, L., Cui, L., Lin, P., Liu, Z., Bao, S., Ma, X., Nan, H., Zhu, W., Cen, J., Mao, Y., et al. (2023) · Cell Stem Cell · doi:10.1016/j.stem.2023.01.009 · Cited by 134 · see citing works
PPARβ/δ: linking metabolism to regeneration
Magadum, A., & Engel, F. B. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19072013 · Cited by 110 · see citing works
Nadph oxidase 1 in liver macrophages promotes inflammation and tumor development in mice
Liang, S., Ma, H.-Y., Zhong, Z., Dhar, D., Liu, X., Xu, J., Koyama, Y., Nishio, T., Karin, D., Karin, G., et al. (2019) · Gastroenterology · doi:10.1053/j.gastro.2018.11.019 · Cited by 92 · see citing works
Self-citationNon-cell autonomous effects of the senescence-associated secretory phenotype in cancer therapy.
Saleh, T., Tyutynuk-Massey, L., Cudjoe, E. K., Idowu, M. O., Landry, J. W., & Gewirtz, D. A. (2018) · Frontiers in Oncology · doi:10.3389/fonc.2018.00164 · Cited by 85 · see citing works
Alsabri, G. A., van der Horst, F., Alkaabi, S. A., Alavi, S. A., Forouzanfar, T., & Helder, M. N. (2024) · Growth Factors · doi:10.1080/08977194.2024.2432951 · Cited by 8 · see citing works
Determinants, mechanisms, and functional outcomes of myeloid cell diversity in cancer
Caronni, N., Montaldo, E., Mezzanzanica, L., Cilenti, F., Genua, M., & Ostuni, R. (2021) · Immunological Reviews · doi:10.1111/imr.12944 · Cited by 6 · see citing works
- Authors
- Karin, M., & Clevers, H.
- Affiliations
- University of California San Diego (US)
- University Medical Center Utrecht (NL)
- Corresponding author
- Karin, Michael
- Clevers, Hans
- Venue
- Nature
- Published
- 2016-01
- Volume
- 529
- Issue
- 7586
- Pages
- 307-315
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC5228603
- OpenAlex
- W2299393419
- Cited by
- 767
- References
- 18
- Citations by year
- 2026: 50 · 2025: 81 · 2024: 69 · 2023: 73 · 2022: 95 · 2021: 91 · 2020: 88 · 2019: 70 · 2018: 69 · 2017: 55 · 2016: 26
- FWCI
- 9.30
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- KNAW research portal (Royal Academy of Art and Sciences (KNAW)) (publishedVersion)
- PubMed Central (acceptedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
- Utrecht University Repository (Utrecht University) (submittedVersion)
- Funders
- National Institute of Environmental Health Sciences (P42ES010337)
- Topics
- Health Sciences › Medicine › Rehabilitation › Wound Healing and Treatments
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Wnt/β-catenin signaling in development and cancer
- Keywords
- tissue regeneration, tissue repair, inflammatory cytokines, Wnt signaling, intestinal regeneration, liver regeneration, degenerative diseases
- MeSH terms
- Animals, Drosophila melanogaster, Humans, Inflammation, Regeneration, Therapeutics, Wound Healing, Signal Transduction, Cytokines, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review