Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

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18. Characterizing the avian gut microbiota: membership, driving influences, and potential function
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19. Species–function relationships shape ecological properties of the human gut microbiome
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20. Mild cognitive impairment has similar alterations as Alzheimer's disease in gut microbiota
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29. Next-generation sequencing: insights to advance clinical investigations of the microbiome
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30. Association of host genome with intestinal microbial composition in a large healthy cohort
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35. QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling
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36. Oral Microbiome Composition Reflects Prospective Risk for Esophageal Cancers
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39. High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model
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40. Variations in oral microbiota associated with oral cancer
    Hongsen Zhao, Min Chu, Zhengwei Huang, Xi Yang, Shujun Ran, Bin Hu, Chenping Zhang, Jingping Liang · 2017 · Scientific Reports
41. Randomised clinical trial: gut microbiome biomarkers are associated with clinical response to a low <scp>FODMAP</scp> diet in children with the irritable bowel syndrome
    Chumpitazi, B. P., Cope, J. L., Hollister, E. B., Tsai, C. M., McMeans, A. R., Luna, R. A., Versalovic, J., Shulman, R. J. · 2015 · Alimentary Pharmacology &amp; Therapeutics
42. Brief Report: Intestinal Dysbiosis in Ankylosing Spondylitis
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43. The role of the intestinal microbiota in type 1 diabetes mellitus
    Mikael Knip, Heli Siljander · 2016 · Nature Reviews Endocrinology
44. Gut microbial profile is altered in primary biliary cholangitis and partially restored after UDCA therapy
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    Ning Ling, Chen Zhu, Chao Xue, Huan Chen, Yinghua Duan, Chang Peng, Shiwei Guo, Qirong Shen · 2016 · Soil Biology and Biochemistry
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