Genome-wide analysis of mammalian promoter architecture and evolution

Cluster analysis and display of genome-wide expression patterns

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

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The Transcriptional Landscape of the Mammalian Genome

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Sequence logos: a new way to display consensus sequences

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NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

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The two NF-κB activation pathways and their role in innate and adaptive immunity

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The ENCODE (ENCyclopedia Of DNA Elements) Project

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The UCSC Genome Browser Database

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Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals

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Antisense Transcription in the Mammalian Transcriptome

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Whole-genome sequencing analysis identifies rare, large-effect noncoding variants and regulatory regions associated with circulating protein levels

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Genome-wide approaches for cancer gene discovery

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Genome-wide detection of a TFIID localization element from an initial human disease mutation

Yang, M. Q., Laflamme, K., Gotea, V., Joiner, C. H., Seidel, N. E., Wong, C., Petrykowska, H. M., Lichtenberg, J., Lee, S. B., Welch, L. R., et al. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq1035 · Cited by 26

Computational methods to dissect cis-regulatory transcriptional networks

Rani, V. (2007) · Journal of Biosciences · doi:10.1007/s12038-007-0142-9 · Cited by 27

Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus

Motti, D., Duigou, C. L., Eugène, E., Chémaly, N., Wittner, L., Lazarević, D., Krmac, H., Marstrand, T. T., Valen, E., Sanges, R., et al. (2010) · European Journal of Neuroscience · doi:10.1111/j.1460-9568.2010.07403.x · Cited by 26

Alternative polyadenylation signals and promoters act in concert to control tissue-specific expression of the Opitz Syndrome gene MID1

Winter, J., Kunath, M., Roepcke, S., Krause, S., Schneider, R., & Schweiger, S. (2007) · BMC Molecular Biology · doi:10.1186/1471-2199-8-105 · Cited by 26

Differential motif enrichment analysis of paired ChIP-seq experiments

Lesluyes, T., Johnson, J., Machanick, P., & Bailey, T. L. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-752 · Cited by 26

What functional genomics has taught us about transcriptional regulation in malaria parasites

Toenhake, C. G., & Bártfai, R. (2019) · Briefings in Functional Genomics · doi:10.1093/bfgp/elz004 · Cited by 26

TATA and paused promoters active in differentiated tissues have distinct expression characteristics

Ramalingam, V., Natarajan, M., Johnston, J., & Zeitlinger, J. (2021) · Molecular Systems Biology · doi:10.15252/msb.20209866 · Cited by 26

A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms

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Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters

Bellora, N., Farré, D., & Albà, M. M. (2007) · BMC Genomics · doi:10.1186/1471-2164-8-459 · Cited by 26

Alternate RNA StructuresPreprint

Wu, M. T.-P., & D’Souza, V. M. (2020) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a032425 · Cited by 27

The Role of XPB/Ssl2 dsDNA Translocase Processivity in Transcription Start-site Scanning

Tomko, E. J., Luyties, O., Rimel, J. K., Tsai, C.-L., Fuss, J. O., Fishburn, J., Hahn, S., Tsutakawa, S. E., Taatjes, D. J., & Galburt, E. A. (2021) · Journal of Molecular Biology · doi:10.1016/j.jmb.2021.166813 · Cited by 25

Bilaterian-like promoters in the highly compact Amphimedon queenslandica genome

Fernández-Valverde, S. L., & Degnan, B. M. (2016) · Scientific Reports · doi:10.1038/srep22496 · Cited by 27

Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases

Zucchelli, S., Fedele, S., Vatta, P., Calligaris, R., Heutink, P., Rizzu, P., Itoh, M., Persichetti, F., Santoro, C., Kawaji, H., et al. (2019) · Molecular Neurobiology · doi:10.1007/s12035-018-1465-2 · Cited by 25

Differential regulation of alternative promoters emerges from unified kinetics of enhancer-promoter interaction

Wang, J., Zhang, S., Lu, H., & Xu, H. (2022) · Nature Communications · doi:10.1038/s41467-022-30315-6 · Cited by 25

Discovery of Regulatory Elements is Improved by a Discriminatory Approach

Valen, E., Sandelin, A., Winther, O., & Krogh, A. (2009) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000562 · Cited by 25

Whole transcriptome analysis: what are we still missing?

Saxena, A., & Carninci, P. (2010) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.135 · Cited by 25

A p53-dependent promoter associated with polymorphic tandem repeats controls the expression of a viral transcript encoding clustered microRNAs

Stik, G., Laurent, S., Coupeau, D., Coutaud, B., Dambrine, G., Rasschaert, D., & Muylkens, B. (2010) · RNA · doi:10.1261/rna.2121210 · Cited by 32

Polymorphism of Myostatin (MSTN) Promoter Gene and its Association with Growth and Muscling Traits in Bali Cattle

Khasanah, H., Gunawan, A., Priyanto, R., Ulum, M. F., & Jakaria, J. (2016) · Media Peternakan · doi:10.5398/medpet.2016.39.2.95 · Cited by 26

CpG Islands Shape the Epigenome Landscape

Papin, C., Gras, S. L., Ibrahim, A., Salem, H., Karimi, M. M., Stoll, I., Ugrinova, I., Schröder, M., Fontaine, E., Omran, Z., et al. (2020) · Journal of Molecular Biology · doi:10.1016/j.jmb.2020.09.018 · Cited by 25

Experimental and bioinformatic characterisation of the promoter region of the Marfan syndrome gene, FBN1

SUMMERS, K. M., Bokil, N. J., Baisden, J. M., West, M., Sweet, M. J., Raggatt, L. J., & Hume, D. A. (2009) · Genomics · doi:10.1016/j.ygeno.2009.06.005 · Cited by 25

Identification and analysis of the promoter region of the human DHCR24 gene: involvement of DNA methylation and histone acetylation

Drzewińska‐Chańko, J., Walczak‐Drzewiecka, A., & Ratajewski, M. (2010) · Molecular Biology Reports · doi:10.1007/s11033-010-0206-z · Cited by 25

Transcriptional Regulation of NMDA Receptor Expression

Bai, G., & Hoffman, P. W. (2008) · Frontiers in neuroscience · doi:10.1201/9781420044157.ch5 · Cited by 26

Gene promoters show chromosome-specificity and reveal chromosome territories in humans

Gagniuc, P. A., & Ionescu-Tirgoviste, C. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-278 · Cited by 24

CHO genome mining for synthetic promoter design

Johari, Y. B., Brown, A. J., Alves, C. S., Zhou, Y., Wright, C. M., Estes, S. D., Kshirsagar, R., & James, D. C. (2019) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2019.01.015 · Cited by 24

Chromatin Signature and Transcription Factor Binding Provide a Predictive Basis for Understanding Plant Gene Expression

Wu, Z., Tang, J. Y., Zhuo, J., Tian, Y., Zhao, F., Li, Z., Yan, Y., & Yang, R. (2019) · Plant and Cell Physiology · doi:10.1093/pcp/pcz051 · Cited by 24

Sequencing of first-strand cDNA library reveals full-length transcriptomes

Agarwal, S., Macfarlan, T. S., Sartor, M. A., & Iwase, S. (2015) · Nature Communications · doi:10.1038/ncomms7002 · Cited by 24

Regulation of plasma-membrane-associated sialidase NEU3 gene by Sp1/Sp3 transcription factors

Yamaguchi, K., Koseki, K., Shiozaki, M., Shimada, Y., Wada, T., & Miyagi, T. (2010) · Biochemical Journal · doi:10.1042/bj20100350 · Cited by 24

Diversification of TOLLIP isoforms in mouse and man

Lo, Y.-L.-S., Beckhouse, A. G., Boulus, S. L., & Wells, C. A. (2009) · Mammalian Genome · doi:10.1007/s00335-009-9188-3 · Cited by 25

Molecular switch for cold acclimation — anatomy of the cold-inducible promoter in plants

Jiang, Y., Peng, D., Bai, L.-P., Ma, H., Chen, L., Zhao, M., Xu, Z., & Guo, Z. (2013) · Biochemistry (Moscow) · doi:10.1134/s0006297913040032 · Cited by 24

Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships

Yokoyama, K. D., Ohler, U., & Wray, G. A. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp423 · Cited by 24

NCPHLDA: a novel method for human lncRNA–disease association prediction based on network consistency projection

Xie, G., Huang, Z., Liu, Z., Lin, Z., & Ma, L. (2019) · Molecular Omics · doi:10.1039/c9mo00092e · Cited by 24

Combined Chromatin and Expression Analysis Reveals Specific Regulatory Mechanisms within Cytokine Genes in the Macrophage Early Immune Response

Iglesias, M. J., Reilly, S., Emanuelsson, O., Sennblad, B., Pirmoradian, M., Folkersen, L., Mälarstig, A., Lagergren, J., Eriksson, P. O., Hamsten, A., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032306 · Cited by 24

Understanding the regulatory genome

Alonso, M. E., Pernaute, B., Crespo, M., Gómez-Skármeta, J. L., & Manzanares, M. (2009) · The International Journal of Developmental Biology · doi:10.1387/ijdb.072428ma · Cited by 25

Causal role of a promoter polymorphism in natural variation of the Arabidopsis floral repressor gene FLC

Zhu, P., Schon, M. A., Questa, J. I., Nodine, M. D., & Dean, C. (2023) · Current Biology · doi:10.1016/j.cub.2023.08.079 · Cited by 23

TRF2: TRansForming the view of general transcription factors

Zehavi, Y., Kedmi, A., Ideses, D., & Juven‐Gershon, T. (2015) · Transcription · doi:10.1080/21541264.2015.1004980 · Cited by 23

Mapping active promoters by Ch IP ‐seq profiling of H3K4me3 in cichlid fish – a first step to uncover cis‐regulatory elements in ecological model teleosts

Kratochwil, C. F., & Meyer, A. (2014) · Molecular Ecology Resources · doi:10.1111/1755-0998.12350 · Cited by 23

PPARγ and NF-κB regulate the gene promoter activity of their shared repressor, TNIP1

Gurevich, I., Zhang, C., Encarnacao, P. C., Struzynski, C. P., Livings, S. E., & Aneskievich, B. J. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.09.006 · Cited by 23

Fanconi Anemia Core Complex Gene Promoters Harbor Conserved Transcription Regulatory Elements

Meier, D., & Schindler, D. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022911 · Cited by 24

Transcriptional Regulation During Zygotic Genome Activation in Zebrafish and Other Anamniote Embryos

Wragg, J. W., & Müller, F. (2016) · Advances in genetics · doi:10.1016/bs.adgen.2016.05.001 · Cited by 25

Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters

Dreos, R., Ambrosini, G., & Bücher, P. (2016) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005144 · Cited by 24

Developmental Functions of the Dynamic DNA Methylome and Hydroxymethylome in the Mouse and Zebrafish: Similarities and Differences

Jessop, P., Ruzov, A. S., & Gering, M. (2018) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2018.00027 · Cited by 23

Genome annotation across species using deep convolutional neural networks

Khodabandelou, G., Routhier, E., & Mozziconacci, J. (2020) · PeerJ Computer Science · doi:10.7717/peerj-cs.278 · Cited by 23

Identification and Characterization of Human snoRNA Core Promoters

Li, T., Zhou, X., Wang, X., Zhu, D., & Zhang, Y. (2010) · Genomics · doi:10.1016/j.ygeno.2010.03.010 · Cited by 23

Making ends meet: coordination between RNA 3′‐end processing and transcription initiation

Andersen, P. K., Jensen, T. H., & Lykke‐Andersen, S. (2013) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1156 · Cited by 22

Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes

Fan, K., Moore, J. E., Zhang, X.-O., & Weng, Z. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab345 · Cited by 23

An overview of transcription in dinoflagellates

Zaheri, B., & Morse, D. (2022) · Gene · doi:10.1016/j.gene.2022.146505 · Cited by 23

Nuclear Respiratory Factor 1 Mediates the Transcription Initiation of Insulin-Degrading Enzyme in a TATA Box-Binding Protein-Independent Manner

Zhang, L., Ding, Q., & Wang, Z. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042035 · Cited by 22

Abundance, arrangement, and function of sequence motifs in the chicken promoters

Abe, H., & Gemmell, N. J. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-900 · Cited by 22

Computational Design and Application of Endogenous Promoters for Transcriptionally Targeted Gene Therapy for Rheumatoid Arthritis

Geurts, J., Joosten, L. A. B., Takahashi, N., Arntz, O. J., Glück, A., Bennink, M. B., van den Berg, W. B., & van de Loo, F. A. J. (2009) · Molecular Therapy · doi:10.1038/mt.2009.182 · Cited by 22

Rare k-mer DNA: Identification of sequence motifs and prediction of CpG island and promoter

Hashim, E. K. M., & Abdullah, R. (2015) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2015.09.014 · Cited by 22

Molecular cloning of novel transcripts of human kallikrein-related peptidases 5, 6, 7, 8 and 9 (KLK5 – KLK9), using Next-generation sequencing

Adamopoulos, P. G., Kontos, C. K., & Scorilas, A. (2017) · Scientific Reports · doi:10.1038/s41598-017-16269-6 · Cited by 22

Splicing and Transcription Differ between Spore and Intracellular Life Stages in the Parasitic Microsporidia

Gill, E. E., Lee, R. C. H., Corradi, N., Grisdale, C. J., Limpright, V. O., Keeling, P. J., & Fast, N. M. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq050 · Cited by 22

Functional Annotation of Human Long Non-Coding RNAs via Molecular PhenotypingPreprint

Ramilowski, J. A., Yip, C. W., Agrawal, S., Chang, J.-C., Ciani, Y., Kulakovskiy, I. V., Mendez, M., Ooi, J. L. C., Ouyang, J. F., Parkinson, N., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/700864 · Cited by 22

The Long Road to Understanding RNAPII Transcription Initiation and Related Syndromes

Compe, E., & Egly, J. (2021) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-090220-112253 · Cited by 21

PARP-1 Expression in the Mouse is Controlled by an Autoregulatory Loop: PARP-1 Binding to an Upstream S/MAR Element and to a Novel Recognition Motif in its Promoter Suppresses Transcription

Vidaković, M., Gluch, A., Qiao, J., Oumard, A., Frisch, M., Poznanović, G., & Bode, J. (2009) · Journal of Molecular Biology · doi:10.1016/j.jmb.2009.03.032 · Cited by 21

Spermatogenesis Associated 4 Promotes Sertoli Cell Proliferation Modulated Negatively by Regulatory Factor X1

Jiang, J., Zhang, N., Shiba, H., Li, L., & Wang, Z. (2013) · PLoS ONE · doi:10.1371/journal.pone.0075933 · Cited by 21

Promoter, alternative splice forms, and genomic structure of protocadherin 15

Alagramam, K. N., Miller, N. D., Adappa, N. D., Pitts, D. R., Heaphy, J. C., Yuan, H., & Smith, R. J. (2007) · Genomics · doi:10.1016/j.ygeno.2007.06.007 · Cited by 21

No Gene in the Genome Makes Sense Except in the Light of Evolution

Haerty, W., & Ponting, C. P. (2014) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-090413-025621 · Cited by 21

Theory of the Origin, Evolution, and Nature of Life

Andrulis, E. D. (2011) · Life · doi:10.3390/life2010001 · Cited by 22

Strategies to identify natural antisense transcripts

Sun, Y., Li, D., Zhang, R., Shang, P., Zhang, G., Yang, T., & Qian, A. (2016) · Biochimie · doi:10.1016/j.biochi.2016.11.006 · Cited by 21

Promoter Motifs in NCLDVs: An Evolutionary Perspective

Oliveira, G. P., Andrade, A., Rodrigues, R. A. L., Arantes, T. S., Boratto, P. V. D. M., Silva, L. C. A., Dornas, F. P., Trindade, G. D. S., Drumond, B. P., Scola, B. L., et al. (2017) · Viruses · doi:10.3390/v9010016 · Cited by 21

Chromatin dynamics at the maternal to zygotic transition: recent advances from the zebrafish model

Akdogan‐Ozdilek, B., Duval, K. L., & Goll, M. G. (2020) · F1000Research · doi:10.12688/f1000research.21809.1 · Cited by 21

High-Resolution Mapping of Transcription Initiation in the Asexual Stages of Toxoplasma gondii

Markus, B. M., Waldman, B. S., Lorenzi, H., & Lourido, S. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.617998 · Cited by 23

Systemic identification of estrogen-regulated genes in breast cancer cells through cap analysis of gene expression mapping

Yamaga, R., Ikeda, K., Boele, J., Horie‐Inoue, K., Takayama, K., Urano, T., Kaida, K., Carninci, P., Kawai, J., Hayashizaki, Y., et al. (2014) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2014.04.033 · Cited by 21

Activation of alternative Jdp2 promoters and functional protein isoforms in T-cell lymphomas by retroviral insertion mutagenesis

Rasmussen, M. H., Wang, B., Wabl, M. R., Nielsen, A. L., & Pedersen, F. S. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp469 · Cited by 21

Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment

Romano, O., Peano, C., Tagliazucchi, G. M., Petiti, L., Poletti, V., Cocchiarella, F., Rizzi, E., Severgnini, M., Cavazza, A., Rossi, C., et al. (2016) · Scientific Reports · doi:10.1038/srep24724 · Cited by 22

The Hox cluster microRNA miR-615: a case study of intronic microRNA evolution

Quah, S., & Holland, P. W. H. (2015) · EvoDevo · doi:10.1186/s13227-015-0027-1 · Cited by 20

Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME

Finocchiaro, G., Mancuso, F. M., Cittaro, D., & Müller, H. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm119 · Cited by 20

Macrophages.com: An on-line community resource for innate immunity research

Robert, C., Lu, X., Law, A., Freeman, T. C., & Hume, D. A. (2011) · Immunobiology · doi:10.1016/j.imbio.2011.07.025 · Cited by 22

Exploiting Nucleotide Composition to Engineer Promoters

Grabherr, M. G., Pontiller, J., Mauceli, E., Ernst, W., Baumann, M., Biagi, T., Swofford, R., Russell, P. H., Zody, M. C., Palma, F. D., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0020136 · Cited by 21

Whole Exome Sequencing to Identify Genetic Variants Associated with Raised Atherosclerotic Lesions in Young Persons

Hixson, J. E., Jun, G., Shimmin, L. C., Wang, Y., Yu, G., Mao, C., Warren, A. S., Howard, T. D., Heide, R. S. V., Eyk, J. E. V., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-04433-x · Cited by 21

Regulation of PPARGC1A gene expression in trained and untrained human skeletal muscle

Popov, D. V., Lysenko, E. A., Makhnovskii, P. A., Kurochkina, N. S., & Виноградова, О. Л. (2017) · Physiological Reports · doi:10.14814/phy2.13543 · Cited by 20

Novel alternative splice variants of the human protein arginine methyltransferase 1 (PRMT1) gene, discovered using next-generation sequencing

Adamopoulos, P. G., Mavrogiannis, A. V., Kontos, C. K., & Scorilas, A. (2019) · Gene · doi:10.1016/j.gene.2019.02.072 · Cited by 20

TransPrise: a novel machine learning approach for eukaryotic promoter prediction

Pachganov, S., Murtazalieva, K., Зарубин, А. А., Sokolov, D., Chartier, D. R., & Tatarinova, T. V. (2019) · PeerJ · doi:10.7717/peerj.7990 · Cited by 20

The Normal Structure and Regulation of Human Globin Gene Clusters

Forget, B. G., & Hardison, R. C. (2009) · Cambridge University Press eBooks · doi:10.1017/cbo9780511596582.007 · Cited by 20

Regulation of the Pannexin-1 Promoter in the Rat Epididymis1

Dufresne, J., & Cyr, D. G. (2014) · Biology of Reproduction · doi:10.1095/biolreprod.114.122168 · Cited by 20

Mutations on the DNA Binding Surface of TBP Discriminate between Yeast TATA and TATA-Less Gene Transcription

Kamenova, I., Warfield, L., & Hahn, S. (2014) · Molecular and Cellular Biology · doi:10.1128/mcb.01685-13 · Cited by 20

Illuminating eukaryotic transcription start sites

Stamatoyannopoulos, J. A. (2010) · Nature Methods · doi:10.1038/nmeth0710-501 · Cited by 20

Defective signal transduction in B lymphocytes lacking presenilin proteins

Yagi, T., Giallourakis, C. C., Mohanty, S., Scheidig, C., Shen, J., Zheng, H., Xavier, R. J., & Shaw, A. C. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0707755105 · Cited by 20

Transcriptional regulation and function of the Neurospora clock gene white collar 2 and its isoforms

Neiss, A., Schafmeier, T., & Brunner, M. (2008) · EMBO Reports · doi:10.1038/embor.2008.113 · Cited by 20

Genome-wide uniformity of human ‘open’ pre-initiation complexesPreprint

Lai, W., & Pugh, B. F. (2016) · Genome Research · doi:10.1101/gr.210955.116 · Cited by 21

Dissection of core promoter syntax through single nucleotide resolution modeling of transcription initiationPreprint

He, A. Y., & Danko, C. G. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.13.583868 · Cited by 24

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Schaefer, U., Kodzius, R., Kai, C., Kawai, J., Carninci, P., Hayashizaki, Y., & Bajić, V. B. (2010) · PLoS ONE · doi:10.1371/journal.pone.0013934 · Cited by 19

Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host

Volkening, J. D., Spatz, S. J., Ponnuraj, N., Akbar, H., Arrington, J. V., Vega‐Rodriguez, W., & Jarosinski, K. W. (2023) · PLoS Pathogens · doi:10.1371/journal.ppat.1011204 · Cited by 19

Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression

Zhang, M., Sjöström, M., Cui, X., Foye, A., Farh, K. K., Shrestha, R., Lundberg, A., Dang, H. X., Li, H., Febbo, P. G., et al. (2024) · Nature Cell Biology · doi:10.1038/s41556-024-01438-3 · Cited by 19

DNA Structure and Promoter Engineering

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A Polymorphic Microsatellite Repeat within the ECE-1c Promoter Is Involved in Transcriptional Start Site Determination, Human Evolution, and Alzheimer's Disease

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