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Hearing silence: non-neutral evolution at synonymous sites in mammals
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Cites
Initial sequence of the chimpanzee genome and comparison with the human genome
The Chimpanzee Sequencing and Analysis Consortium (2005) · Nature · doi:10.1038/nature04072 · Cited by 2,459
Listening to silence and understanding nonsense: exonic mutations that affect splicing
Cartegni, L., Chew, S. L., & Krainer, A. R. (2002) · Nature Reviews Genetics · doi:10.1038/nrg775 · Cited by 2,209
O'Driscoll, M., Ruiz-Perez, V. L., Woods, C. G., Jeggo, P. A., & Goodship, J. A. (2003) · Nature Genetics · doi:10.1038/ng1129 · Cited by 794
Transcription-associated mutational asymmetry in mammalian evolution
Program, N. C. S., Green, P., Ewing, B., Miller, W., Thomas, P. J., & Green, E. D. (2003) · Nature Genetics · doi:10.1038/ng1103 · Cited by 285 · cited 1×
“First, only transcribed genes will experience biases that are associated with transcriptionally coupled mutation and repai”
BackgroundNatural Selection and Algorithmic Design of mRNA
Cohen, B., & Skiena, S. (2003) · Journal of Computational Biology · doi:10.1089/10665270360688101 · Cited by 35
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Wood, L. D., Parsons, D. W., Jones, S., Lin, J., Sjöblom, T., Leary, R. J., Shen, D., Boca, S. M., Barber, T., Ptak, J., et al. (2007) · Science · doi:10.1126/science.1145720 · Cited by 2,833
Understanding the contribution of synonymous mutations to human disease
Sauna, Z. E., & Kimchi-Sarfaty, C. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3051 · Cited by 1,022
Codon optimality, bias and usage in translation and mRNA decay
Hanson, G., & Coller, J. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2017.91 · Cited by 825
Biased gene conversion and the evolution of mammalian genomic landscapes
Duret, L., & Galtier, N. (2009) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-082908-150001 · Cited by 737
Detecting Natural Selection in Genomic Data
Vitti, J. J., Grossman, S. R., & Sabeti, P. C. (2013) · Annual Review of Genetics · doi:10.1146/annurev-genet-111212-133526 · Cited by 694
Kryukov, G. V., Pennacchio, L. A., & Sunyaev, S. R. (2007) · The American Journal of Human Genetics · doi:10.1086/513473 · Cited by 598
High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells
Kudla, G., Lipinski, L., Caffin, F., Helwak, A., & Zylicz, M. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040180 · Cited by 476
Rate-Limiting Steps in Yeast Protein Translation
Shah, P., Ding, Y., Niemczyk, M., Kudla, G., & Plotkin, J. B. (2013) · Cell · doi:10.1016/j.cell.2013.05.049 · Cited by 463
Buljan, M., Chalancon, G., Eustermann, S., Wagner, G. P., Fuxreiter, M., Bateman, A., & Babu, M. M. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.05.039 · Cited by 396
Gu, W., Zhou, T., & Wilke, C. O. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000664 · Cited by 313
Rokas, A., & Carroll, S. B. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040352 · Cited by 315
Synonymous mutations in representative yeast genes are mostly strongly non-neutral
Shen, X., Song, S., Li, C., & Zhang, J. (2022) · Nature · doi:10.1038/s41586-022-04823-w · Cited by 298
On the origin and evolution of SARS-CoV-2
Singh, D., & Yi, S. V. (2021) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00604-z · Cited by 281
Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing
Sharon, E., Chen, S.-A. A., Khosla, N. M., Smith, J. D., Pritchard, J. K., & Fraser, H. B. (2018) · Cell · doi:10.1016/j.cell.2018.08.057 · Cited by 225
Multiple roles of the coding sequence 5′ end in gene expression regulation
Tuller, T., & Zur, H. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1313 · Cited by 206
How do synonymous mutations affect fitness?
Parmley, J. L., & Hurst, L. D. (2007) · BioEssays · doi:10.1002/bies.20592 · Cited by 142
Self-citationKORSTEN, P., MUELLER, J. C., HERMANNSTÄDTER, C., BOUWMAN, K. M., DINGEMANSE, N. J., DRENT, P. J., LIEDVOGEL, M., MATTHYSEN, E., Van OERS, K., Van OVERVELD, T., et al. (2010) · Molecular Ecology · doi:10.1111/j.1365-294x.2009.04518.x · Cited by 123
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
Studer, R. A., Penel, S., Duret, L., & Robinson-Rechavi, M. (2008) · Genome Research · doi:10.1101/gr.076992.108 · Cited by 84
Belay, H., Burton, C. L., Lovic, V., Meaney, M. J., Sokolowski, M., & Fleming, A. S. (2011) · Behavioral Neuroscience · doi:10.1037/a0022891 · Cited by 61
Ren, D., Chin, K. R., & French, J. A. (2014) · PLoS ONE · doi:10.1371/journal.pone.0111638 · Cited by 28
Vertebrate codon bias indicates a highly GC-rich ancestral genome
Nabiyouni, M., Prakash, A., & Fedorov, A. (2013) · Gene · doi:10.1016/j.gene.2013.01.033 · Cited by 25
Dynamic Landscapes of tRNA Transcriptomes and Translatomes in Diverse Mouse Tissues
Yu, P., Zhou, S., Gao, Y., Liang, Y., Guo, W., Wang, D. O., Ding, S., Lin, S., Wang, J., & Cun, Y. (2023) · Genomics, Proteomics & Bioinformatics · doi:10.1016/j.gpb.2022.07.006 · Cited by 20
Sequence divergence of Mus spretus and Mus musculus across a skin cancer susceptibility locus
Mahler, K. L., Fleming, J. L., Dworkin, A. M., Gladman, N., Cho, H.-Y., Mao, J.-H., Balmain, A., & Toland, A. E. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-626 · Cited by 18
Metadata
- Authors
- Chamary, J. V., Parmley, J. L., & Hurst, L. D.
- Venue
- Nature Reviews Genetics
- Published
- 2006-02
- Volume
- 7
- Issue
- 2
- Pages
- 98-108
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2076793571
- Cited by
- 831
- References
- 5
- FWCI
- 4.87
- Type
- journal article
- Language
- en
- Open access
- closed
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
