Adaptation–not by sweeps alone

Introduction to Quantitative Genetics.

Edwards, A. W. F., & Falconer, D. S. (1982) · Biometrics · doi:10.2307/2529912 · Cited by 21,447

Introduction to Quantitative Genetics

J.-M., G., & Falconer, D. S. (1962) · Population · doi:10.2307/1525780 · Cited by 3,773

The hitch-hiking effect of a favourable gene

Smith, J. M., & Haigh, J. (1974) · Genetical Research · doi:10.1017/s0016672300014634 · Cited by 3,415

The hitch-hiking effect of a favourable gene

Smith, J. M., & Haigh, J. (2007) · Genetics Research · doi:10.1017/s0016672308009579 · Cited by 2,675

The causes of molecular evolution

Gillespie, J. H. (1992) · Choice Reviews Online · doi:10.5860/choice.30-2064 · Cited by 1,214

Positive Natural Selection in the Human Lineage

Sabeti, P. C., Schaffner, S. F., Fry, B., Lohmueller, J., Varilly, P., Shamovsky, O., Palma, A., Mikkelsen, T. S., Altshuler, D., & Lander, E. S. (2006) · Science · doi:10.1126/science.1124309 · Cited by 1,157

Untitled work

Hermisson (2005) · doi:10.1534/genetics.104.036947 · Cited by 1,009

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

Pritchard, J. K., Pickrell, J. K., & Coop, G. (2010) · Current Biology · doi:10.1016/j.cub.2009.11.055 · Cited by 932

Understanding quantitative genetic variation

Barton, N., & Keightley, P. D. (2002) · Nature Reviews Genetics · doi:10.1038/nrg700 · Cited by 833

Genome-wide association analysis identifies 20 loci that influence adult height

Initiative, D. G., Weedon, M. N., The Wellcome Trust Case Control Consortium, Cambridge GEM Consortium, Lango, H., Lindgren, C. M., Wallace, C., Evans, D. M., Mangino, M., Freathy, R. M., et al. (2008) · Nature Genetics · doi:10.1038/ng.121 · Cited by 826

Population Differentiation: Measures

Mona, S., & Bertorelle, G. (2013) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0005456.pub3

Sweep model is swept away

Flintoft, L. (2011) · Nature Reviews Genetics · doi:10.1038/nrg2978

Investigating genome wide patterns of natural selection in eukaryotes

Gossmann, T. I. (2012) · Sussex Research Online (University of Sussex)

Complex diseases: a genome-wide assessment of the role of selective pressure on the human genome

Amato, R. (2011)

Genetics of Local Adaptation in theThree-spined Stickleback

DeFaveri, J. (2013) · Työväentutkimus Vuosikirja

Population Genetic Methods and Applications to Human Genomes

Gattepaille, L. M. (2015) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

Using exome sequencing to study adaptive evolution in non-human primates and human populations

George, R. D. (2012) · ResearchWorks at the University of Washington (University of Washington)

Wide genome involvement in response to long-term selection for antibody response in an experimental population of White Leghorn chickensPreprint

Lillie, M., Sheng, Z., Honaker, C. F., Dorshorst, B., Siegel, P. B., & Carlborg, Ö. (2016) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/046953

The genomic signatures of adaptive evolution in Populus

Wang, J. (2016) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

Detecting Polygenic Evolution: Problems, Pitfalls, and

Wellenreuther, P., & Hansson, B. (2016)

Migratory Genomics of Lake Sturgeon

Whitaker, J. M. (2016) · doi:10.33915/etd.6941

Explorations of the polygenic genetic architecture of flowering time in the worldwide Arabidopsis thaliana populationPreprint

Zan, Y., & Carlborg, Ö. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/206706

Detecting Natural Selection in the Genome

Kelley, J. L. (2017) · Oxford University Press eBooks · doi:10.1093/obo/9780199941728-0088

Hitchhiking and Selective Sweeps

Walsh, B., & Lynch, M. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780198830870.003.0008

Modes of rapid polygenic adaptationPreprint

Jain, K., & Stephan, W. (2018) · arXiv (Cornell University) · doi:10.48550/arxiv.1810.07983

Comparative genomic approaches to human evolutionary history

Cagan, A. (2017) · Qucosa (Saxon State and University Library Dresden)

Genomic inbreeding trends in the global Thoroughbred horse population driven by influential sire lines and selection for exercise trait-related genesPreprint

McGivney, B. A., Han, H., Corduff, L. R., Katz, L. M., Tozaki, T., MacHugh, D. E., & Hill, E. W. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/770545

Association Genetics and Local Adaptation of Populus trichocarpa Torr. & Gray

Chhetri, H. B. (2019) · The Research Repository @ WVU (West Virginia University) · doi:10.33915/etd.7478

Natural Variation and Evolutionary Responses to Climate Change Stressors in Marine Invertebrates

Griffiths, J. S. (2020) · doi:10.31390/gradschool_dissertations.5168

Grasping the genetic determinants of human adaptations: the "Kings of the Mountains" (Sherpa) case study.

Sazzini, M. (2019) · PubMed · doi:10.4436/jass.97011

Evidence for stabilizing selection at pleiotropic loci for human complex traitsPreprint

Wong, E. S. W., Chenoweth, S. F., Blows, M. W., & Powell, J. E. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/126888

Influência da seleção natural em populações nativas de diferentes ecorregiões americanas

da Silva, C. M. C. (2021) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.41.2021.tde-20072021-104246

Statistics, machine learning and deep learning for population genetic inference

Qin, X. (2021) · St Andrews Research Repository (St Andrews Research Repository) · doi:10.17630/sta/118

The Genomic Basis of the Genetic Differentiation and Local Adaptive Evolution of Pampus Echinogaster based on SLAF-seqPreprint

Li, Y., Lou, F., Li, H., Wang, R., Cai, Z., Zhang, R., Weng, Y., Lin, L., & Zhuang, X. (2021) · Research Square · doi:10.21203/rs.3.rs-640424/v1

The Evolution of Larger Size in High Altitude Drosophila melanogaster has a Polymorphic Genetic ArchitecturePreprint

Sprengelmeyer, Q. D., Lack, J., Braun, D. T., Monette, M. J., & Pool, J. E. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.10.05.463286

Complex adaptive architecture of quantitative resistance erosion in a plant fungal pathogenPreprint

Dumartinet, T., Ravel, S., Roussel, V., Vicente, L. P., Aguayo, J., Abadie, C., & Carlier, J. P. (2021) · doi:10.22541/au.163256054.40998405/v1

Genetic structure, phylogeography, adaptive variation and speciation in the tropical tree genus Symphonia

Torroba-Balmori, P. (2022) · doi:10.35376/10324/55204

Viability Selection at Linked Sites

Eldon, B. (2023) · Mathematics · doi:10.3390/math11030569

Human Genome

Choin, J., & Quintana‐Murci, L. (2023) · Springer eBooks · doi:10.1007/978-3-031-25910-4_80

Microevolutionary Hypothesis of the Obesity EpidemicPreprint

Fraiman, J., Baver, S., & Henneberg, M. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.29.555238

Convergent evolution of complex adaptive traits enabled human life at high altitudesPreprint

Ferraretti, G., Rill, A., Abondio, P., Smith, K. N., Ojeda‐Granados, C., Fanti, S. D., Izzi, M., Sherpa, P. T., Cocco, P., Tiriticco, M., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.10.24.563738

Convergent evolution on oceanic islands: comparative genomics reveals species-specific processes in birdsPreprint

Recuerda, M., Montoya, J. C. H., Blanco, G., & Milá, B. (2024) · doi:10.22541/au.171025860.06543673/v1

Additional file 1 of Rapid genomic evolution in Brassica rapa with bumblebee selection in experimental evolution

Frachon, L., & Schiestl, F. P. (2024) · Figshare · doi:10.6084/m9.figshare.24971316

Genomic profiling of selective sweeps through haplotype differentiation unravelled genes associated with production and reproduction traits in Indian goat breeds

Thomas, M., Radhika, G., Thirupathy, R., & Aravindakshan, T. V. (2024) · Tropical Animal Health and Production · doi:10.1007/s11250-024-04136-2

Enhancing detection of polygenic adaptation: a comparative study of machine learning and statistical approaches using simulated evolve-and-resequence data

Caliendo, C., Gerber, S., & Pfenninger, M. (2026) · BMC Genomics · doi:10.1186/s12864-026-13163-2

Building evolutionary resilience: a framework for managing safe haven populationsPreprint

Slavenko, A., Ahrens, C. W., Manning, A. D., & Weeks, A. R. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.11.669227

Additional file 3 of Rapid genomic evolution in Brassica rapa with bumblebee selection in experimental evolution

Frachon, L., & Schiestl, F. P. (2024) · Figshare · doi:10.6084/m9.figshare.26665810

Additional file 1 of Genomic history of the Italian population recapitulates key evolutionary dynamics of both Continental and Southern Europeans

Sazzini, M., Abondio, P., Sarno, S., Gnecchi‐Ruscone, G. A., Ragno, M., Giuliani, C., De Fanti, S., Ojeda‐Granados, C., Boattini, A., Marquis, J., et al. (2020) · Figshare · doi:10.6084/m9.figshare.12355664

Additional file 2 of Rapid genomic evolution in Brassica rapa with bumblebee selection in experimental evolution

Frachon, L., & Schiestl, F. P. (2024) · Figshare · doi:10.6084/m9.figshare.24971644

Additional file 4 of Rapid genomic evolution in Brassica rapa with bumblebee selection in experimental evolution

Frachon, L., & Schiestl, F. P. (2024) · Figshare · doi:10.6084/m9.figshare.26665813

Additional file 1 of Signatures of adaptation in myopia-related genes on the sunlight exposure hypothesis

Xia, T., & Nakayama, K. (2023) · Figshare · doi:10.6084/m9.figshare.24494188

Neutral or Non-neutral: A Case Study of the Microsatellite Loci Used in Apostichopus Japonicus Population-genetic Analysis for its Monitoring and Conservation

Yagodina, V. D., Bondar, E. I., & Brykov, V. A. (2026) · Thalassas An International Journal of Marine Sciences · doi:10.1007/s41208-026-01038-y

Bases génétiques et histoire de la différenciation adaptative chez Mytilus

Gosset, C. C. (2012) · theses.fr (ABES) · doi:10.70675/bd21cc23z65f6z43dfza6acz32fde1e4dd7c

Le défi évolutif du changement climatique, processus adaptatifs chez le corail rouge (Corallium rubrum)

Pratlong, M. (2016) · theses.fr (ABES) · doi:10.70675/2f48e6ddza822z455eza9d5zf10fc679949c

Étude de l’adaptation du mil à la variation climatique : analyse phénotypique, d’association génotype / phénotype et de sélection

Salia, O. I. (2016) · theses.fr (ABES) · doi:10.70675/5ecf0d6azbefcz4fb5za921z64ccfbb0c56f

Origins and adaptation in humans : a case study of taste and lifestyle

Sjöstrand, A. E. (2015) · theses.fr (ABES) · doi:10.70675/0b1e0427za184z4d38z84f3zaf79e3d63d76 · Cited by 1

Génomique de l'adaptation de Globodera pallida aux résistances de la pomme de terre et conséquences sur les traits d'histoire de vie du nématode

Eoche‐Bosy, D. (2016) · theses.fr (ABES) · doi:10.70675/3b37585bzc9b3z4bc5za4c1zd35513003ea3

Génétique de l’adaptation et de la spéciation : théorie et analyse de données de séquençage haut-débit dans le complexe d’espèces Mytilus edulis

Fraïssé, C. (2014) · theses.fr (ABES) · doi:10.70675/36bf0a28z47d6z42e4z8855z4e20221465b4

Sélection naturelle et adaptation aux changements rapides de pressions environnementales chez l'Homme

Lopez, M. (2018) · theses.fr (ABES) · doi:10.70675/df71047dz87f5z482cz96b0zf7bc6df59e0f

Adaptation génétique et détection de la sélection dans le cadre d'évolutions expérimentales

Barthélémy, C. (2020) · theses.fr (ABES) · doi:10.70675/7dc68194za756z484bzaaa9z8e735e872a79

Etude de l'adaptation aux résistances variétales chez le champignon Pseudocercospora fijiensis, agent causal de la maladie des raies noires du bananier

Dumartinet, T. (2021) · doi:10.70675/e82cb95fza363z44edzbe25z4ac07b8ab630

Divergent Selection on Dispersal Targets Chemosensory and Neuronal Genes in Tribolium castaneum

Pointer, M. D., Nash, W. J., Spurgin, L. G., McMullan, M., Butler, S. J., & Richardson, D. S. (2026) · Molecular Ecology · doi:10.1111/mec.70350

Genetic basis of temporal variation in phenology in a woody perennial plant

Liu, Y. (2026) · npj Systems Biology and Applications · doi:10.1038/s41540-026-00691-6

Genetics

Roseman, C. C., & Weaver, T. D. (2026) · Cambridge University Press eBooks · doi:10.1017/9781316756492.021

Perspectives and Overviews

Cowgill, L. W., & Maddux, S. D. (2026) · Cambridge University Press eBooks · doi:10.1017/9781316756492.017

Contrasting selection on GxE and main effect loci for soybean grain yield

Happ, M. M., Graef, G. L., Howard, R., & Hyten, D. L. (2026) · Genetics · doi:10.1093/genetics/iyag151

Haplotype structure: an overlooked key factor shaping the genomic selection response

Xiao, C., Nolte, V., & Schlötterer, C. (2026) · Genetics · doi:10.1093/genetics/iyag181

Climate warming reduces the speed and predictability of polygenic adaptation to salinity declinePreprint

Du, Z., Taylor, A., Larsen, L., Lu, S., & Lee, C. E. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.01.742181

Cave evolution on repeat: reuse of the same genomic regions across lineages of Astyanax mexicanus

Richards, E. J., Moran, R. L., Wiese, J., O’Gorman, M., Hutton, P., Rastogi, A., North, O. W., Manning, A. E., Roback, E. Y., Kowalko, J. E., et al. (2026) · Genetics · doi:10.1093/genetics/iyag223

What constrains directional selection on complex traits in the wild

Mojica, J. P. (2011) · KU ScholarWorks (The University of Kansas)

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

Pritchard, J. K., Pickrell, J. K., & Coop, G. (2010) · Current Biology · doi:10.1016/j.cub.2009.11.055 · Cited by 932

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic

Pritchard, J. K., Pickrell, J. K., & Coop, G. (2010)

Modes of Rapid Polygenic Adaptation

Jain, K., & Stephan, W. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx240 · Cited by 80

Polygenic adaptation: a unifying framework to understand positive selection

Barghi, N., Hermisson, J., & Schlötterer, C. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-0250-z · Cited by 425

Polygenic adaptation: From sweeps to subtle frequency shifts

Höllinger, I., Pennings, P. S., & Hermisson, J. (2019) · PLoS Genetics · doi:10.1371/journal.pgen.1008035 · Cited by 145