Seasonality of the gut microbiota of free-ranging white-faced capuchins in a tropical dry forest
Open accessAbstract
Research on the gut microbiota of free-ranging mammals is offering new insights into dietary ecology. However, for free-ranging primates, little information is available for how microbiomes are influenced by ecological variation through time. Primates inhabiting seasonal tropical dry forests undergo seasonally specific decreases in food abundance and water availability, which have been linked to adverse health effects. Throughout the course of a seasonal transition in 2014, we collected fecal samples from three social groups of free-ranging white-faced capuchin monkeys (Cebus capucinus imitator) in Sector Santa Rosa, Área de Conservación Guanacaste, Costa Rica. 16S rRNA sequencing data reveal that unlike other primates, the white-faced capuchin monkey gut is dominated by Bifidobacterium and Streptococcus. Linear mixed effects models indicate that abundances of these genera are associated with fluctuating availability and consumption of fruit and arthropods, whereas beta diversity clusters by rainfall season. Whole shotgun metagenomics revealed that the capuchin gut is dominated by carbohydrate-binding modules associated with digestion of plant polysaccharides and chitin, matching seasonal dietary patterns. We conclude that rainfall and diet are associated with the diversity, composition, and function of the capuchin gut microbiome. Additionally, microbial fluctuations are likely contributing to nutrient uptake and the health of wild primate populations.
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Seasonality may affect the function and composition of the gut microbiota in free ranging animal models in response to a seasonal change in diet.
“Free ranging animal models have suggested that seasonality may affect the function and composition of the gut microbiota [87,88] in response to a seasonal change in diet.”
From Effect of Diet on the Gut Microbiota: Rethinking Intervention Duration (2019) · cites this paper as [88]
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- Authors
- Orkin, J. D., Campos, F. A., Myers, M. S., Cheves Hernandez, S. E., Guadamuz, A., & Melin, A. D.
- Affiliations
- University of Calgary (CA)
- Duke University (US)
- Department of Anthropology & Archaeology, University of Calgary , Calgary, AB, Canada
- Guanacaste Conservation Area (CR)
- Corresponding author
- Orkin, Joseph D
- Venue
- The ISME Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-08-22
- Volume
- 13
- Issue
- 1
- Pages
- 183-196
- ISSN
- 1751-7362 (ISSN-L)
- 1751-7370
- PMC
- PMC6298967
- OpenAlex
- W2888694607
- Cited by
- 140
- References
- 86
- Citations by year
- 2026: 13 · 2025: 21 · 2024: 22 · 2023: 21 · 2022: 22 · 2021: 19 · 2020: 12 · 2019: 9 · 2018: 1
- FWCI
- 3.65
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- The ISME Journal (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Washington University in St. Louis
- University of Calgary
- Eppley Foundation for Research
- Public Health Agency of Canada
- Public Health Agency
- Centers for Disease Control and Prevention
- Alberta Children's Hospital Research Institute
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Social Sciences › Psychology › Social Psychology › Primate Behavior and Ecology
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- gut microbiota, white-fronted capuchin, Cebus capucinus imitator, seasonal variation, tropical dry forest, precipitation seasonality, dietary ecology, Bifidobacterium, Streptococcus, carbohydrate-binding module, chitin digestion, wild primates, fecal microbiota
- MeSH terms
- Gastrointestinal Microbiome, Animals, Bacteria, Cebus, Costa Rica, Diet, Feces, RNA, Bacterial, RNA, Ribosomal, 16S, Seasons, Tropical Climate, Genome, Bacterial, Metagenomics, Forests
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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