Evolutionary development and co‐phylogeny of primate‐associated bifidobacteria
Abstract
Summary: In recent years, bifidobacterial populations in the gut of various monkey species have been assessed in several ecological surveys, unveiling a diverse, yet unexplored ecosystem harbouring novel species. In the current study, we investigated the species distribution of bifidobacteria present in 23 different species of primates, including human samples, by means of 16S rRNA microbial profiling and internal transcribed spacer bifidobacterial profiling. Based on the observed bifidobacterial‐host co‐phylogeny, we found a statistically significant correlation between the Hominidae family and particular bifidobacterial species isolated from humans, indicating phylosymbiosis between these lineages. Furthermore, phylogenetic and glycobiome analyses, based on 40 bifidobacterial species isolated from primates, revealed that members of the Bifidobacterium tissieri phylogenetic group, which are typical gut inhabitants of members of the Cebidae family, descend from an ancient ancestor with respect to other bifidobacterial taxa isolated from primates.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
At a phylogenetic level, B. bifidum differs from other HBS, which cluster into two specific subgroups (B. adolescentis group and B. longum group), whereas B. bifidum forms a separate phylogenetic group of its own.
“At a phylogenetic level, B. bifidum differs from other HBS, which cluster into two specific subgroups, i.e., the B. adolescentis group and the B. longum group, whereas B. bifidum forms a separate phylogenetic group of its own [25] .”
From Genome-scale insights into the metabolic landscape and evolutionary development of Bifidobacterium bifidum (2026) · cites this paper as [25]
The Results and Discussion (pp. 12–13) identify B. bifidum, B. adolescentis, and B. longum as distinct phylogenetic groups, supporting the claimed separation. But the statement that all other human-origin bifidobacteria fall into the latter two groups is too broad: the B. bifidum group also contains B. scardovii, which the paper identifies as a species of human origin (p. 13). (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe phylogenetically related B. bifidum species (PBS) are predominantly inhabitants of the non-human primates' gut.
“The phylogenetically related B. bifidum species (PBS), collectively forming the B. bifidum group, and Ninclude B. aerophilum, B. amazonense, B. biavatii, B. goeldii, B. hapali, B. jacchi, B. leontopitheci, B. miconis, B. ramosum, B. samirii, B. scardovii, and B. simiiventris , are predominantly inhabitants of the non-human primates' gut [25-28] .”
From Genome-scale insights into the metabolic landscape and evolutionary development of Bifidobacterium bifidum (2026) · cites this paper as [25]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Part of this paper’s reference list could not be split into single entries.
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works
DADA2: High–resolution sample inference from Illumina amplicon data
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., & Holmes, S. P. (2016) · Nature Methods · doi:10.1038/nmeth.3869 · Cited by 35,698 · see citing works
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1219 · Cited by 33,055 · see citing works
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology · doi:10.1038/s41587-019-0209-9 · Cited by 23,742 · see citing works
Self-citationSearch and clustering orders of magnitude faster than BLAST
Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,617 · see citing works
Prodigal: prokaryotic gene recognition and translation initiation site identification
Hyatt, D., Chen, G.-L., LoCascio, P. F., Land, M., Larimer, F. W., & Hauser, L. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-119 · Cited by 12,426 · see citing works
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815 · see citing works
The carbohydrate-active enzymes database (CAZy) in 2013
Lombard, V., Ramulu, H. G., Drula, É., Coutinho, P. M., & Henrissat, B. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt1178 · Cited by 6,355 · see citing works
Diversity, stability and resilience of the human gut microbiota
Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K., & Knight, R. (2012) · Nature · doi:10.1038/nature11550 · Cited by 5,533 · see citing works
An efficient algorithm for large-scale detection of protein families
Enright, A. J. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.7.1575 · Cited by 3,536 · see citing works
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
Kumar, S., Stecher, G., Suleski, M., & Hedges, S. B. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx116 · Cited by 2,730 · see citing works
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Zhang, H., Yohe, T., Huang, L., Entwistle, S., Wu, P., Yang, Z., Busk, P. K., Xu, Y., & Yin, Y. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky418 · Cited by 2,224 · see citing works
Milani, C., Duranti, S., Bottacini, F., Casey, E., Turroni, F., Mahony, J., Belzer, C., Delgado Palacio, S., Arboleya Montes, S., Mancabelli, L., et al. (2017) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00036-17 · Cited by 1,950 · see citing works
Self-citationnhmmer: DNA homology search with profile HMMs
Wheeler, T. J., & Eddy, S. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt403 · Cited by 903 · see citing works
Gut Bifidobacteria Populations in Human Health and Aging
Arboleya, S., Watkins, C., Stanton, C., & Ross, R. P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01204 · Cited by 683 · see citing works
PGAP: pan-genomes analysis pipeline
Zhao, Y., Wu, J., Yang, J., Sun, S., Xiao, J., & Yu, J. M. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr655 · Cited by 518 · see citing works
A Statistical Test for Host–Parasite Coevolution
Legendre, P., Desdevises, Y., & Bazin, É. (2002) · Systematic Biology · doi:10.1080/10635150252899734 · Cited by 501 · see citing works
Bifidobacteria and Their Health-Promoting Effects
Hidalgo-Cantabrana, C., Delgado, S., Ruiz, L., Ruas-Madiedo, P., Sánchez, B., & Margolles, A. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.bad-0010-2016 · Cited by 490 · see citing works
Genome-scale analyses of health-promoting bacteria: probiogenomics
Ventura, M., O'Flaherty, S., Claesson, M. J., Turroni, F., Klaenhammer, T. R., van Sinderen, D., & O'Toole, P. W. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2047 · Cited by 471 · see citing works
Self-citationLewis, Z. T., Totten, S. M., Smilowitz, J. T., Popović, M., Parker, E. A., Lemay, D. G., Tassell, M. L. V., Miller, M. J., Jin, Y., German, J. B., et al. (2015) · Microbiome · doi:10.1186/s40168-015-0071-z · Cited by 412 · see citing works
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
Amato, K. R., Sanders, J. G., Song, S. J., Nute, M., Metcalf, J. L., Thompson, L., Morton, J. T., Amir, A., McKenzie, V. J., Humphrey, G., et al. (2018) · The ISME Journal · doi:10.1038/s41396-018-0175-0 · Cited by 368 · see citing works
Duranti, S., Lugli, G. A., Mancabelli, L., Armanini, F., Turroni, F., James, K., Ferretti, P., Gorfer, V., Ferrario, C., Milani, C., et al. (2017) · Microbiome · doi:10.1186/s40168-017-0282-6 · Cited by 327 · see citing works
Self-citationAssessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol
Milani, C., Hevia, A., Foroni, E., Duranti, S., Turroni, F., Lugli, G. A., Sánchez, B., Martín, R., Gueimonde, M., van Sinderen, D., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0068739 · Cited by 304 · see citing works
Self-citationBifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
Milani, C., Lugli, G. A., Duranti, S., Turroni, F., Mancabelli, L., Ferrario, C., Mangifesta, M., Hevia, A., Viappiani, A., Scholz, M., et al. (2015) · Scientific Reports · doi:10.1038/srep15782 · Cited by 284 · see citing works
Self-citationDe Filippo, C., Di Paola, M., Ramazzotti, M., Albanese, D., Pieraccini, G., Banci, E., Miglietta, F., Cavalieri, D., & Lionetti, P. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01979 · Cited by 270 · see citing works
Milani, C., Turroni, F., Duranti, S., Lugli, G. A., Mancabelli, L., Ferrario, C., van Sinderen, D., & Ventura, M. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.03500-15 · Cited by 225 · see citing works
Self-citationTurroni, F., Milani, C., Duranti, S., Mancabelli, L., Mangifesta, M., Viappiani, A., Lugli, G. A., Ferrario, C., Gioiosa, L., Ferrarini, A., et al. (2016) · The ISME Journal · doi:10.1038/ismej.2015.236 · Cited by 207 · see citing works
Self-citationBifidobacteria and the infant gut: an example of co-evolution and natural selection
Turroni, F., Milani, C., Duranti, S., Ferrario, C., Lugli, G. A., Mancabelli, L., van Sinderen, D., & Ventura, M. (2017) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-017-2672-0 · Cited by 205 · see citing works
Self-citationEgan, M., Motherway, M. O., Kilcoyne, M., Kane, M., Joshi, L., Ventura, M., & van Sinderen, D. (2014) · BMC Microbiology · doi:10.1186/s12866-014-0282-7 · Cited by 192 · see citing works
Self-citationGarrido, D. A., Ruiz‐Moyano, S., Lemay, D. G., Sela, D. A., German, J. B., & Mills, D. A. (2015) · Scientific Reports · doi:10.1038/srep13517 · Cited by 189 · see citing works
Meta‐analysis of the human gut microbiome from urbanized and pre‐agricultural populations
Mancabelli, L., Milani, C., Lugli, G. A., Turroni, F., Ferrario, C., van Sinderen, D., & Ventura, M. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13692 · Cited by 172 · see citing works
Self-citationExtensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut
Ellegaard, K., Tamarit, D., Javelind, E., Olofsson, T. C., Andersson, S. G. E., & Vásquez, A. (2015) · BMC Genomics · doi:10.1186/s12864-015-1476-6 · Cited by 153 · see citing works
James, K., Motherway, M. O., Bottacini, F., & van Sinderen, D. (2016) · Scientific Reports · doi:10.1038/srep38560 · Cited by 153 · see citing works
Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut
Bottacini, F., Milani, C., Turroni, F., Sánchez, B., Foroni, E., Duranti, S., Serafini, F., Viappiani, A., Strati, F., Ferrarini, A., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0044229 · Cited by 144 · see citing works
Self-citationSeasonality of the gut microbiota of free-ranging white-faced capuchins in a tropical dry forest
Orkin, J. D., Campos, F. A., Myers, M. S., Cheves Hernandez, S. E., Guadamuz, A., & Melin, A. D. (2019) · The ISME Journal · doi:10.1038/s41396-018-0256-0 · Cited by 140 · see citing works
Home chemical and microbial transitions across urbanization
McCall, L., Callewaert, C., Zhu, Q., Song, S. J., Bouslimani, A., Minich, J. J., Ernst, M., Ruiz-Calderón, J. F., Cavallín, H., Pereira, H. D. S., et al. (2019) · Nature Microbiology · doi:10.1038/s41564-019-0593-4 · Cited by 132 · see citing works
Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life
Milani, C., Mangifesta, M., Mancabelli, L., Lugli, G. A., James, K., Duranti, S., Turroni, F., Ferrario, C., Ossiprandi, M. C., van Sinderen, D., et al. (2017) · The ISME Journal · doi:10.1038/ismej.2017.138 · Cited by 119 · see citing works
Self-citationDuranti, S., Milani, C., Lugli, G. A., Mancabelli, L., Turroni, F., Ferrario, C., Mangifesta, M., Viappiani, A., Sánchez, B., Margollés, A., et al. (2016) · Scientific Reports · doi:10.1038/srep23971 · Cited by 116 · see citing works
Self-citationMEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation
Lugli, G. A., Milani, C., Mancabelli, L., van Sinderen, D., & Ventura, M. (2016) · FEMS Microbiology Letters · doi:10.1093/femsle/fnw049 · Cited by 107 · see citing works
Self-citationBifidobacterial utilization of human milk oligosaccharides
Sela, D. A. (2011) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2011.01.025 · Cited by 105 · see citing works
Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family
Lugli, G. A., Milani, C., Turroni, F., Duranti, S., Mancabelli, L., Mangifesta, M., Ferrario, C., Modesto, M., Mattarelli, P., Killer, J., et al. (2017) · BMC Genomics · doi:10.1186/s12864-017-3955-4 · Cited by 100 · see citing works
Self-citationMilani, C., Lugli, G. A., Turroni, F., Mancabelli, L., Duranti, S., Viappiani, A., Mangifesta, M., Segata, N., van Sinderen, D., & Ventura, M. (2014) · FEMS Microbiology Ecology · doi:10.1111/1574-6941.12410 · Cited by 88 · see citing works
Self-citationPlasticity in the Human Gut Microbiome Defies Evolutionary Constraints
Gomez, A. M., Sharma, A. K., Mallott, E. K., Petrželková, K. J., Robinson, C. A. J., Yeoman, C. J., Carbonero, F. G., Pafčo, B., Rothman, J. M., ULANOV, A. V., et al. (2019) · mSphere · doi:10.1128/msphere.00271-19 · Cited by 79 · see citing works
Colonization of the human gut by bovine bacteria present in Parmesan cheese
Milani, C., Duranti, S., Napoli, S., Alessandri, G., Mancabelli, L., Anzalone, R., Longhi, G., Viappiani, A., Mangifesta, M., Lugli, G. A., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09303-w · Cited by 78 · see citing works
Self-citationTracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach
Lugli, G. A., Milani, C., Duranti, S., Mancabelli, L., Mangifesta, M., Turroni, F., Viappiani, A., van Sinderen, D., & Ventura, M. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.02249-17 · Cited by 60 · see citing works
Self-citationIsolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches
Lugli, G. A., Milani, C., Duranti, S., Alessandri, G., Turroni, F., Mancabelli, L., Tatoni, D., Ossiprandi, M. C., van Sinderen, D., & Ventura, M. (2019) · Genome biology · doi:10.1186/s13059-019-1711-6 · Cited by 60 · see citing works
Self-citationGreene, L. K., Bornbusch, S. L., McKenney, E. A., Harris, R. L., Gorvetzian, S. R., Yoder, A. D., & Drea, C. M. (2019) · American Journal of Primatology · doi:10.1002/ajp.22974 · Cited by 48 · see citing works
Bifidobacteria in the digestive tract of bumblebees
Killer, J., Kopečný, J., Mrázek, J., Rada, V., Dubná, S., & Marounek, M. (2009) · Anaerobe · doi:10.1016/j.anaerobe.2009.07.007 · Cited by 37 · see citing works
Lugli, G. A., Mangifesta, M., Duranti, S., Anzalone, R., Milani, C., Mancabelli, L., Alessandri, G., Turroni, F., Ossiprandi, M. C., van Sinderen, D., et al. (2018) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2018.01.002 · Cited by 36 · see citing works
Self-citationMichelini, S., Modesto, M., Filippini, G., Spiezio, C., Sandri, C., Biavati, B., Pisi, A., & Mattarelli, P. (2016) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2016.04.005 · Cited by 35 · see citing works
Duranti, S., Lugli, G. A., Napoli, S., Anzalone, R., Milani, C., Mancabelli, L., Alessandri, G., Turroni, F., Ossiprandi, M. C., van Sinderen, D., et al. (2019) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.003306 · Cited by 34 · see citing works
Self-citationDigestion in the common marmoset (Callithrix jacchus), a gummivore–frugivore
Power, M. L., & Myers, E. W. (2009) · American Journal of Primatology · doi:10.1002/ajp.20737 · Cited by 33 · see citing works
Evaluation of the ability of Bifidobacterium longum to metabolize human intestinal mucus
Ruíz, L., Gueimonde, M., Couté, Y., Salminen, S., Sanchez, J., Reyes‐Gavilán, C. G. D. L., & Margollés, A. (2010) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2010.02159.x · Cited by 29 · see citing works
Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator)
Duranti, S., Mangifesta, M., Lugli, G. A., Turroni, F., Anzalone, R., Milani, C., Mancabelli, L., Ossiprandi, M. C., & Ventura, M. (2017) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.002243 · Cited by 29 · see citing works
Self-citationModesto, M., Puglisi, E., Bonetti, A., Michelini, S., Spiezio, C., Sandri, C., Sgorbati, B., Morelli, L., & Mattarelli, P. (2018) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2018.07.005 · Cited by 28 · see citing works
Modesto, M., Michelini, S., Oki, K., Biavati, B., Watanabe, K., & Mattarelli, P. (2018) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.002545 · Cited by 26 · see citing works
Albert, K., Rani, A., & Sela, D. A. (2018) · Microbial Genomics · doi:10.1099/mgen.0.000183 · Cited by 26 · see citing works
Garrido, D. A., Ruiz‐Moyano, S., Lemay, D. G., Sela, D. A., German, J. B., & Mills, D. A. (2015) · Scientific Reports · doi:10.1038/srep15311 · Cited by 25 · see citing works
Modesto, M., Michelini, S., Sansosti, M. C., Filippo, C. D., Cavalieri, D., Qvirist, L., Andlid, T. A., Spiezio, C., Sandri, C., Pascarelli, S., et al. (2017) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.002472 · Cited by 23 · see citing works
Modesto, M., Watanabe, K., Arita, M., Satti, M., Oki, K., Sciavilla, P., Patavino, C., Cammà, C., Michelini, S., Sgorbati, B., et al. (2019) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.003518 · Cited by 21 · see citing works
Comparative genomics of Bifidobacterium species isolated from marmosets and humans
Brown, C. J., Mtui, D., Oswald, B. P., Leuven, J. T. V., Vallender, E. J., SCHULTZ‐DARKEN, N. J., Ross, C. N., Tardif, S. D., Austad, S. N., & Forney, L. J. (2019) · American Journal of Primatology · doi:10.1002/ajp.22983 · Cited by 17 · see citing works
A comparative study of gut microbiomes in captive nocturnal strepsirrhines
Bornbusch, S. L., Greene, L. K., McKenney, E. A., Volkoff, S. J., Midani, F. S., Joseph, G., Gerhard, W. A., Iloghalu, U. B., Granek, J. A., & Gunsch, C. K. (2019) · American Journal of Primatology · doi:10.1002/ajp.22986 · Cited by 17 · see citing works
Garber, P. A. (2019) · American Journal of Primatology · doi:10.1002/ajp.23052 · Cited by 13 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
The gut microbiome of exudivorous marmosets in the wild and captivity
Malukiewicz, J., Cartwright, R. A., Dergam, J. A., Igayara, C. S., Kessler, S. E., Moreira, S. B., Nash, L. T., Nicola, P. A., Pereira, L. C. M., Pissinatti, A., et al. (2022) · Scientific Reports · doi:10.1038/s41598-022-08797-7 · Cited by 40 · see citing works
Home-site advantage for host species–specific gut microbiota
Sprockett, D. D., Price, J. D., Juritsch, A. F., Schmaltz, R. J., Real, M. V. F., Goldman, S. L., Sheehan, M. J., Ramer‐Tait, A. E., & Moeller, A. H. (2023) · Science Advances · doi:10.1126/sciadv.adf5499 · Cited by 36 · see citing works
Modrackova, N., Stovicek, A., Burtscher, J., Bolechova, P., Killer, J., Domig, K. J., & Neuzil-Bunesova, V. (2021) · Scientific Reports · doi:10.1038/s41598-021-94824-y · Cited by 32 · see citing works
Bifidobacteria: insights into the biology of a key microbial group of early life gut microbiota
Turroni, F., van Sinderen, D., & Ventura, M. (2021) · Microbiome Research Reports · doi:10.20517/mrr.2021.02 · Cited by 22 · see citing works
Self-citationLugli, G. A., Calvete-Torre, I., Alessandri, G., Milani, C., Turroni, F., Laiolo, P., Ossiprandi, M. C., Margolles, A., Ruiz, L., & Ventura, M. (2021) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2021.126273 · Cited by 21 · see citing works
Self-citationCreating an atlas to visualize the biodiversity of the mammalian gut microbiota
Alessandri, G., Rizzo, S. M., Ossiprandi, M. C., van Sinderen, D., & Ventura, M. (2021) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2021.06.028 · Cited by 18 · see citing works
Self-citationCharacterization of Bifidobacterium asteroides Isolates
Pino, A., Benkaddour, B., Inturri, R., Amico, P., Vaccaro, S., Russo, N., Vaccalluzzo, A., Agolino, G., Caggia, C., Hadadji, M., et al. (2022) · Microorganisms · doi:10.3390/microorganisms10030655 · Cited by 17 · see citing works
Kujawska, M., Seki, D., Chalklen, L., Malsom, J., Kiu, R., Goatcher, S., Christoforou, I., Mitra, S., Crouch, L. I., & Hall, L. J. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2025.08.008 · Cited by 15 · see citing works
Anzà, S., Schneider, D., Daniel, R., Heistermann, M., Sangmaneedet, S., Ostner, J., & Schülke, O. (2023) · Microbiome · doi:10.1186/s40168-023-01596-w · Cited by 13 · see citing works
Lugli, G. A., Alessandri, G., Milani, C., Viappiani, A., Fontana, F., Tarracchini, C., Mancabelli, L., Argentini, C., Ruíz, L., Margollés, A., et al. (2021) · Environmental Microbiology · doi:10.1111/1462-2920.15559 · Cited by 12 · see citing works
Self-citationA Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium
Sabater, C., Ruíz, L., & Margollés, A. (2021) · Microorganisms · doi:10.3390/microorganisms9051034 · Cited by 11 · see citing works
Alessandri, G., Lugli, G. A., Tarracchini, C., Rizzo, S. M., Argentini, C., Viappiani, A., Mancabelli, L., Fontana, F., Milani, C., Turroni, F., et al. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.02038-21 · Cited by 11 · see citing works
Self-citationMalukiewicz, J., D’arc, M., Dias, C. A., Cartwright, R. A., Grativol, A. D., Moreira, S. B., Souza, A. R., Tavares, M. C. H., Pissinatti, A., Ruiz-Miranda, C. R., et al. (2023) · Scientific Reports · doi:10.1038/s41598-023-42059-4 · Cited by 8 · see citing works
Kujawska, M., Raulo, A., Millar, M. E., Warren, F. J., Baltrūnaitė, L., Knowles, S. C. L., & Hall, L. J. (2022) · ISME Communications · doi:10.1038/s43705-022-00102-x · Cited by 6 · see citing works
Kozakai, T., Nakajima, A., Miyazawa, K., Sasaki, Y., Odamaki, T., Katoh, T., Fukuma, T., Xiao, J., Suzuki, T., Katayama, T., et al. (2024) · iScience · doi:10.1016/j.isci.2024.111080 · Cited by 6 · see citing works
Zhang, D., Yang, M., Song, X., Xia, Y., Ai, L., & Xiong, Z. (2024) · LWT · doi:10.1016/j.lwt.2024.117207 · Cited by 5 · see citing works
Haute, M. J. S. V., Chacón-Vargas, K., Christensen, C. M., Yumul, S. R. P., Abdulaali, F. F., Benson, A. K., Hutkins, R. W., & Auchtung, T. A. (2025) · mSphere · doi:10.1128/msphere.00673-25 · Cited by 3 · see citing works
Oral and fecal microbiome of confiscated Bengal slow lorises in response to confinement duration
Ni, Q., Dong, S., Xing, B., Zeng, B., Kong, F., Xu, H., Yao, Y., Li, D., Zhang, M., Fan, X., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.941261 · Cited by 3 · see citing works
Prenatal maternal stress effects in wild Assamese macaques (Macaca assamensis)
Anzà, S. (2022) · doi:10.53846/goediss-9510 · Cited by 3 · see citing works
Complete genome sequence of the probiotic Bifidobacterium adolescentis strain iVS-1
Chacón-Vargas, K., Haute, M. J. S. V., Kessinger, I. M. K., McClain, K., Yumul, S. R. P., Christensen, C. M., Lewis, Z. T., & Auchtung, T. A. (2023) · Microbiology Resource Announcements · doi:10.1128/mra.00541-23 · Cited by 2 · see citing works
Lugli, G. A., Selleri, E., Tarracchini, C., Muscò, A., Petraro, S., Longhi, G., Mancabelli, L., Milani, C., Turroni, F., & Ventura, M. (2026) · Microbiome Research Reports · doi:10.20517/mrr.2025.119 · Cited by 1 · see citing works
Self-citationSelleri, E., Longhi, G., Tarracchini, C., Carolis, E. D., Petraro, S., Mancabelli, L., Milani, C., Turroni, F., Ventura, M., & Lugli, G. A. (2026) · Microbiome Research Reports · doi:10.20517/mrr.2026.19
Self-citationZhang, H., Zhao, Q., Luo, B., Zhang, X., Huang, J., Lu, Y., Tian, F., Sun, H., & Ni, Y. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1814222
Bifidobacteria: biogeography, host adaptation and ecological functions
Tarracchini, C., Milani, C., Jones, C. N. L., Turroni, F., Burgess, G., Mahony, J., Hall, L. J., Ventura, M., & van Sinderen, D. (2026) · Nature Reviews Microbiology · doi:10.1038/s41579-026-01367-y
Self-citation
- Authors
- Lugli, G. A., Alessandri, G., Milani, C., Mancabelli, L., Ruiz, L., Fontana, F., Borragán, S., González, A., Turroni, F., Ossiprandi, M. C., Margolles, A., van Sinderen, D., & Ventura, M.
- Affiliations
- University of Parma (IT)
- Department of Microbiology and Biochemistry, Dairy Research Institute of Asturias Spanish National Research Council (IPLA‐CSIC) Paseo Río Linares s/n Villaviciosa Asturias 33300 Spain
- Parque de Cabárceno 39690 Obregón Cantabria Spain
- Zoo de Santillana Avda. del Zoo 2 Santillana del Mar Cantabria 39330 Spain
- APC Microbiome Institute and School of Microbiology, Bioscience Institute National University of Ireland T12 YT20 Cork Ireland
- Corresponding author
- Ventura, Marco
- ORCID
- Venue
- Environmental Microbiology
- Publisher
- Wiley
- Published
- 2020-06-24
- Volume
- 22
- Issue
- 8
- Pages
- 3375-3393
- ISSN
- 1462-2912 (ISSN-L)
- 1462-2920
- OpenAlex
- W3033941599
- Cited by
- 24
- References
- 64
- Citations by year
- 2026: 4 · 2025: 2 · 2024: 2 · 2023: 4 · 2022: 6 · 2021: 6
- FWCI
- 1.30
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Environmental Microbiology (publishedVersion)
- PubMed (publishedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion)
- Funders
- Joint Programming Initiative A healthy diet for a healthy life (15/JP‐HDHL/3280)
- Science Foundation Ireland (SFI/12/RC/2273a, SFI/12/RC/2273b)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Keywords
- Bifidobacterium, primates, gut microbiota, phylosymbiosis, Cebidae, Hominidae, 16S rRNA gene profiling, ITS region, primate evolution, human gut microbiome
- MeSH terms
- Gastrointestinal Microbiome, Animals, Bifidobacterium, Biological Evolution, Humans, Phylogeny, Primates, RNA, Ribosomal, 16S, Ecosystem
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
