The bifidobacterial distribution in the microbiome of captive primates reflects parvorder and feed specialization of the host
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Bifidobacteria, which commonly inhabit the primate gut, are beneficial contributors to host wellbeing. Anatomical differences and natural habitat allow an arrangement of primates into two main parvorders; New World monkeys (NWM) and Old World monkeys (OWM). The number of newly described bifidobacterial species is clearly elevated in NWM. This corresponds to our finding that bifidobacteria were the dominant group of cultivated gut anaerobes in NWM, while their numbers halved in OWM and were often replaced by Clostridiaceae with sarcina morphology. We examined an extended MALDI-TOF MS database as a potential identification tool for rapid screening of bifidobacterial distribution in captive primates. Bifidobacterial isolates of NWM were assigned mainly to species of primate origin, while OWM possessed typically multi-host bifidobacteria. Moreover, bifidobacterial counts reflected the feed specialization of captive primates decreasing from frugivore-insectivores, gummivore-insectivores, frugivore-folivores to frugivore-omnivores. Amplicon sequencing analysis supported this trend with regards to the inverse ratio of Actinobacteria and Firmicutes. In addition, a significantly higher diversity of the bacterial population in OWM was found. The evolution specialization of primates seems to be responsible for Bifidobacterium abundance and species occurrence. Balanced microbiota of captive primates could be supported by optimized prebiotic and probiotic stimulation based on the primate host.
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The phylogenetically related B. bifidum species (PBS) are predominantly inhabitants of the non-human primates' gut.
“The phylogenetically related B. bifidum species (PBS), collectively forming the B. bifidum group, and Ninclude B. aerophilum, B. amazonense, B. biavatii, B. goeldii, B. hapali, B. jacchi, B. leontopitheci, B. miconis, B. ramosum, B. samirii, B. scardovii, and B. simiiventris , are predominantly inhabitants of the non-human primates' gut [25-28] .”
From Genome-scale insights into the metabolic landscape and evolutionary development of Bifidobacterium bifidum (2026) · cites this paper as [27]
The Results (Cultivation analysis and Amplicon sequencing analysis; page unavailable) identify B. ramosum, B. biavatii, and B. aerophilum in non-human primates, supporting the gut association for some named species. Our copy does not identify the listed species collectively as a phylogenetically related B. bifidum group or establish that the group predominantly inhabits non-human primate guts. (LLM, conf=0.82)
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Self-citationIUCN Red List of Threatened Primate Species
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Flagged first, then by citations
2 of the 122 references couldn’t be matched to a known paper.
Research works printed but not linked: 1
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Cited by
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Feed Insects as a Reservoir of Granadaene-Producing Lactococci
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Culture-dependent screening of endospore-forming clostridia in infant feces
Ingribelli, E., Modráčková, N., Tejnecký, V., Killer, J., Schwab, C., & Bunešová, V. (2023) · BMC Microbiology · doi:10.1186/s12866-023-03104-4 · Cited by 4 · see citing works
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Insectivore Nutrition – A Review of Current Knowledge
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Defined Pig Microbiota Mixture as Promising Strategy against Salmonellosis in Gnotobiotic Piglets
Modráčková, N., Horváthová, K., Mekadim, C., Šplı́chal, I., Šplı́chalová, A., Amin, A., Mrázek, J., Vlková, E., & Bunešová, V. (2024) · Animals · doi:10.3390/ani14121779 · Cited by 2 · see citing works
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Additional file 1 of Culture-dependent screening of endospore-forming clostridia in infant feces
Ingribelli, E., Modráčková, N., Tejnecký, V., Killer, J., Schwab, C., & Bunešová, V. (2024) · Figshare · doi:10.6084/m9.figshare.26641711
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- Authors
- Modrackova, N., Stovicek, A., Burtscher, J., Bolechova, P., Killer, J., Domig, K. J., & Neuzil-Bunesova, V.
- Affiliations
- BOKU University (AT)
- Venue
- Scientific Reports
- Published
- 2021-07-27
- Volume
- 11
- Issue
- 1
- Pages
- 15273-15273
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC8316555
- OpenAlex
- W3185334909
- Cited by
- 32
- References
- 122
- Citations by year
- 2026: 6 · 2025: 6 · 2024: 6 · 2023: 7 · 2022: 2 · 2021: 5
- FWCI
- 1.73
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- European Regional Development Fund (02.1.01/0.0/0.0, CZ.02, CZ.02.1.01, CZ.02.1.01/0.0, CZ.02.1.01 / 0.0 / 0.0 / 16_019 / 0000845, CZ.02.1.01/0.0/0.0, /16_019)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Keywords
- Bifidobacterium, captive primates, New World monkeys, Old World monkeys, dietary specialization, frugivory, folivory, insectivory, Clostridiaceae, MALDI-TOF identification, actinobacteria, Firmicutes, bacterial diversity, prebiotics, probiotics
- MeSH terms
- Animals, Bifidobacterium, Feces, Primates, RNA, Ribosomal, 16S, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Probiotics, Microbiota
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