Cited by 84Genetic Neurodegenerative DiseasesNeurogenesis and neuroplasticity mechanismsGenetics and Neurodevelopmental Disorders

Huntington disease oligodendrocyte maturation deficits revealed by single-nucleus RNAseq are rescued by thiamine-biotin supplementation

Open access
Lim, Ryan G., Al-Dalahmah, Osama, Wu, Jie, Gold, Maxwell P., Reidling, Jack C., Tang, Guomei, Adam, Miriam, Dansu, David K. +21 more·2022·Nature Communications

Abstract

The complexity of affected brain regions and cell types is a challenge for Huntington’s disease (HD) treatment. Here we use single nucleus RNA sequencing to investigate molecular pathology in the cortex and striatum from R6/2 mice and human HD post-mortem tissue. We identify cell type-specific and -agnostic signatures suggesting oligodendrocytes (OLs) and oligodendrocyte precursors (OPCs) are arrested in intermediate maturation states. OL-lineage regulators OLIG1 and OLIG2 are negatively correlated with CAG length in human OPCs, and ATACseq analysis of HD mouse NeuN-negative cells shows decreased accessibility regulated by OL maturation genes. The data implicates glucose and lipid metabolism in abnormal cell maturation and identify PRKCE and Thiamine Pyrophosphokinase 1 ( TPK1 ) as central genes. Thiamine/biotin treatment of R6/1 HD mice to compensate for TPK1 dysregulation restores OL maturation and rescues neuronal pathology. Our insights into HD OL pathology spans multiple brain regions and link OL maturation deficits to abnormal thiamine metabolism.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41467-022-35388-x

Cites

15 of 15 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • In the cerebral cortex of Huntington's disease patients, SGK1 protein expression is downregulated.

    “However, a more specific study has revealed that in the cerebral cortex of HD patients, SGK1 protein expression is downregulated”

    From Serum/glucocorticoid regulated kinase 1 (SGK1) in neurological disorders: pain or gain (2024) · cites this paper as Lim et al., 2022

    The Results section on causal network modeling reports that Sgk1 is downregulated in R6/2 mice. The Results section on human HD validation reports decreased cortical protein levels for PRKCE, not SGK1. Thus, the cited paper supports SGK1 downregulation in a mouse model but not the claimed decrease in SGK1 protein in patients’ cerebral cortex. (LLM, conf=0.85)

    Experimental — accuracy not yet measured
  • Detailed single-cell sequencing shows downregulation of SGK1 protein expression in oligodendrocytes in Huntington's disease.

    “Detailed single-cell sequencing has also shown a downregulation of SGK1 protein expression in oligodendrocytes”

    From Serum/glucocorticoid regulated kinase 1 (SGK1) in neurological disorders: pain or gain (2024) · cites this paper as Lim et al., 2022

    The Results section on causal network modeling reports that Sgk1 is downregulated in the oligodendrocyte/precursor-cell network of R6/2 Huntington disease mice. But single-nucleus RNA sequencing measures gene expression, not protein expression; the cited passage does not establish that SGK1 protein is reduced specifically in oligodendrocytes. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • In Huntington's disease models, oligodendrocytes exhibit maturation and functional impairments associated with changes in SGK1 expression, particularly in myelination and maintenance.

    “In HD models, oligodendrocytes exhibit maturation and functional impairments (Wilton and Stevens, 2020), associated with changes in SGK1 expression, particularly in myelination and maintenance”

    From Serum/glucocorticoid regulated kinase 1 (SGK1) in neurological disorders: pain or gain (2024) · cites this paper as Lim et al., 2022

    The Results sections on R6/2 oligodendrocytes and causal network modeling report maturation and myelination-related impairments, and identify Sgk1 as downregulated in R6/2 mice. The Discussion describes a possible inability to turn over myelin components, but does not establish that SGK1 changes specifically impair myelination or myelin maintenance. The indexed passages have no page numbers. (LLM, conf=0.85)

    Experimental — accuracy not yet measured
  • The role of SGK1 in metabolic pathways and glucose uptake may be disrupted and potentially exacerbate the pathological process of Huntington's disease.

    “The role of SGK1 in metabolic pathways and glucose uptake may be disrupted and potentially exacerbate the pathological process of HD”

    From Serum/glucocorticoid regulated kinase 1 (SGK1) in neurological disorders: pain or gain (2024) · cites this paper as Lim et al., 2022

    In Results, under causal network modeling, the paper says Sgk1 regulates transporters involved in metabolic pathways and glucose uptake and is downregulated in R6/2 mice, indicating a potential loss of function in HD. It does not establish that this loss exacerbates HD pathology. (LLM, conf=0.82)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 84

  1. [1]Vonsattel JP Keller C Del Pilar Amaya M Neuropathology of Huntington’s disease Handb. Clin. Neurol. 2008 89 599 618 10.1016/S0072-9752(07)01256-0 18631782 · DOI
  2. [2]The Huntington’s Disease Collaborative Research Group. A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington’s disease chromosomes. Cell72, 971–983 (1993). 8458085
  3. [4]Hyeon, J. W., Kim, A. H. & Yano, H. Epigenetic regulation in Huntington’s disease. Neurochem. Int.148, 105074 (2021). PMC9110274 34038804
  4. [5]Malla B Guo X Senger G Chasapopoulou Z Yildirim F A systematic review of transcriptional dysregulation in Huntington’s disease studied by RNA sequencing Front. Genet. 2021 12 751033 10.3389/fgene.2021.751033 34721539 PMC8554124 · DOI
  5. [6]Vashishtha M Targeting H3K4 trimethylation in Huntington disease Proc. Natl Acad. Sci. USA 2013 110 E3027 3036 10.1073/pnas.1311323110 23872847 PMC3740882 · DOI
  6. [7]Barnat M Huntington’s disease alters human neurodevelopment Science 2020 369 787 793 10.1126/science.aax3338 32675289 PMC7859879 · DOI · Paper page
  7. [8]Hickman RA Developmental malformations in Huntington disease: neuropathologic evidence of focal neuronal migration defects in a subset of adult brains Acta Neuropathol. 2021 141 399 413 10.1007/s00401-021-02269-4 33517535 PMC7882590 · DOI
  8. [9]Conforti P Faulty neuronal determination and cell polarization are reverted by modulating HD early phenotypes Proc. Natl Acad. Sci. USA 2018 115 E762 E771 10.1073/pnas.1715865115 29311338 PMC5789931 · DOI
  9. [10]Lee CY Cantle JP Yang XW Genetic manipulations of mutant huntingtin in mice: new insights into Huntington’s disease pathogenesis FEBS J. 2013 280 4382 4394 10.1111/febs.12418 23829302 PMC3770892 · DOI
  10. [11]Ferrari Bardile C Intrinsic mutant HTT-mediated defects in oligodendroglia cause myelination deficits and behavioral abnormalities in Huntington disease Proc. Natl Acad. Sci. USA 2019 116 9622 9627 10.1073/pnas.1818042116 31015293 PMC6511031 · DOI
  11. [12]Lim RG Huntington’s disease iPSC-derived brain microvascular endothelial cells reveal WNT-mediated angiogenic and blood-brain barrier deficits Cell Rep. 2017 19 1365 1377 10.1016/j.celrep.2017.04.021 28514657 PMC5646270 · DOI · Paper page
  12. [13]Haremaki T Self-organizing neuruloids model developmental aspects of Huntington’s disease in the ectodermal compartment Nat. Biotechnol. 2019 37 1198 1208 10.1038/s41587-019-0237-5 31501559 · DOI
  13. [14]Lee H Cell type-specific transcriptomics reveals that mutant Huntingtin leads to mitochondrial RNA release and neuronal innate immune activation Neuron 2020 107 891 908.e898 10.1016/j.neuron.2020.06.021 32681824 PMC7486278 · DOI · Paper page
  14. [15]Teo RT Structural and molecular myelination deficits occur prior to neuronal loss in the YAC128 and BACHD models of Huntington disease Hum. Mol. Genet. 2016 25 2621 2632 27126634 PMC5181633
  15. [16]Jin J Early white matter abnormalities, progressive brain pathology and motor deficits in a novel knock-in mouse model of Huntington’s disease Hum. Mol. Genet. 2015 24 2508 2527 10.1093/hmg/ddv016 25609071 PMC4383863 · DOI
  16. [17]Huang B Mutant huntingtin downregulates myelin regulatory factor-mediated myelin gene expression and affects mature oligodendrocytes Neuron 2015 85 1212 1226 10.1016/j.neuron.2015.02.026 25789755 PMC4366619 · DOI
  17. [18]Ferrari Bardile C Abnormal spinal cord myelination due to oligodendrocyte dysfunction in a model of Huntington’s disease J. Huntington’s Dis. 2021 10 377 384 10.3233/JHD-210495 34366364 · DOI
  18. [19]Benraiss A A TCF7L2-responsive suppression of both homeostatic and compensatory remyelination in Huntington disease mice Cell Rep. 2022 40 111291 10.1016/j.celrep.2022.111291 36044851 · DOI
  19. [20]Benraiss A Cell-intrinsic glial pathology is conserved across human and murine models of Huntington’s disease Cell Rep. 2021 36 109308 10.1016/j.celrep.2021.109308 34233199 · DOI
  20. [21]Meunier C Merienne N Jolle C Deglon N Pellerin L Astrocytes are key but indirect contributors to the development of the symptomatology and pathophysiology of Huntington’s disease Glia 2016 64 1841 1856 10.1002/glia.23022 27442486 · DOI
  21. [22]Osipovitch M Human ESC-derived chimeric mouse models of Huntington’s disease reveal cell-intrinsic defects in glial progenitor cell differentiation Cell Stem Cell 2019 24 107 122.e107 10.1016/j.stem.2018.11.010 30554964 PMC6700734 · DOI · Paper page
  22. [23]Teo RTY Impaired remyelination in a mouse model of Huntington disease Mol. Neurobiol. 2019 56 6873 6882 10.1007/s12035-019-1579-1 30937636 · DOI
  23. [24]Hodges A Regional and cellular gene expression changes in human Huntington’s disease brain Hum. Mol. Genet. 2006 15 965 977 10.1093/hmg/ddl013 16467349 · DOI · Paper page
  24. [25]Labadorf A RNA sequence analysis of human Huntington disease brain reveals an extensive increase in inflammatory and developmental gene expression PLoS One 2015 10 e0143563 10.1371/journal.pone.0143563 26636579 PMC4670106 · DOI
  25. [26]Wilson H Dervenoulas G Politis M Structural magnetic resonance imaging in Huntington’s disease Int. Rev. Neurobiol. 2018 142 335 380 10.1016/bs.irn.2018.09.006 30409258 · DOI
  26. [27]Myers RH Decreased neuronal and increased oligodendroglial densities in Huntington’s disease caudate nucleus J. Neuropathol. Exp. Neurol. 1991 50 729 742 10.1097/00005072-199111000-00005 1836225 · DOI
  27. [28]Gomez-Tortosa E Quantitative neuropathological changes in presymptomatic Huntington’s disease Ann. Neurol. 2001 49 29 34 10.1002/1531-8249(200101)49:1<29::AID-ANA7>3.0.CO;2-B 11198293 · DOI
  28. [29]de la Monte SM Vonsattel JP Richardson EP Jr. Morphometric demonstration of atrophic changes in the cerebral cortex, white matter, and neostriatum in Huntington’s disease J. Neuropathol. Exp. Neurol. 1988 47 516 525 10.1097/00005072-198809000-00003 2971785 · DOI
  29. [30]Gabery S Early white matter pathology in the fornix of the limbic system in Huntington disease Acta Neuropathol. 2021 142 791 806 10.1007/s00401-021-02362-8 34448021 PMC8500909 · DOI
  30. [31]Mangiarini L Exon 1 of the HD gene with an expanded CAG repeat is sufficient to cause a progressive neurological phenotype in transgenic mice Cell 1996 87 493 506 10.1016/S0092-8674(00)81369-0 8898202 · DOI · Paper page
  31. [32]Mayr JA Thiamine pyrophosphokinase deficiency in encephalopathic children with defects in the pyruvate oxidation pathway Am. J. Hum. Genet. 2011 89 806 812 10.1016/j.ajhg.2011.11.007 22152682 PMC3234371 · DOI
  32. [33]Zeng WQ Biotin-responsive basal ganglia disease maps to 2q36.3 and is due to mutations in SLC19A3 Am. J. Hum. Genet. 2005 77 16 26 10.1086/431216 15871139 PMC1226189 · DOI
  33. [34]Labay V Mutations in SLC19A2 cause thiamine-responsive megaloblastic anaemia associated with diabetes mellitus and deafness Nat. Genet. 1999 22 300 304 10.1038/10372 10391221 · DOI
  34. [35]Dhir S Tarasenko M Napoli E Giulivi C Neurological, psychiatric, and biochemical aspects of thiamine deficiency in children and adults Front. Psychiatry 2019 10 207 10.3389/fpsyt.2019.00207 31019473 PMC6459027 · DOI
  35. [36]Eden E Navon R Steinfeld I Lipson D Yakhini Z GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists BMC Bioinform. 2009 10 48 10.1186/1471-2105-10-48 PMC2644678 19192299 · DOI · Paper page
  36. [38]Trapnell C The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells Nat. Biotechnol. 2014 32 381 386 10.1038/nbt.2859 24658644 PMC4122333 · DOI · Paper page
  37. [39]Langfelder P Horvath S WGCNA: an R package for weighted correlation network analysis BMC Bioinform. 2008 9 559 10.1186/1471-2105-9-559 PMC2631488 19114008 · DOI · Paper page
  38. [40]Beckmann ND Multiscale causal networks identify VGF as a key regulator of Alzheimer’s disease Nat. Commun. 2020 11 3942 10.1038/s41467-020-17405-z 32770063 PMC7414858 · DOI · Paper page
  39. [42]Carcamo-Orive I Analysis of transcriptional variability in a large human iPSC library reveals genetic and non-genetic determinants of heterogeneity Cell Stem Cell 2017 20 518 532.e519 10.1016/j.stem.2016.11.005 28017796 PMC5384872 · DOI
  40. [44]Lobo MK Yeh C Yang XW Pivotal role of early B-cell factor 1 in development of striatonigral medium spiny neurons in the matrix compartment J. Neurosci. Res. 2008 86 2134 2146 10.1002/jnr.21666 18338816 · DOI
  41. [45]Kusko R Large-scale transcriptomic analysis reveals that pridopidine reverses aberrant gene expression and activates neuroprotective pathways in the YAC128 HD mouse Mol. Neurodegener. 2018 13 25 10.1186/s13024-018-0259-3 29783994 PMC5963017 · DOI
  42. [47]Usui N Zbtb16 regulates social cognitive behaviors and neocortical development Transl. Psychiatry 2021 11 242 10.1038/s41398-021-01358-y 33895774 PMC8068730 · DOI
  43. [48]Hinds LR Dynamic glucocorticoid-dependent regulation of Sgk1 expression in oligodendrocytes of adult male rat brain by acute stress and time of day PLoS One 2017 12 e0175075 10.1371/journal.pone.0175075 28376115 PMC5380358 · DOI · Paper page
  44. [49]Gregath A Lu QR Epigenetic modifications-insight into oligodendrocyte lineage progression, regeneration, and disease FEBS Lett. 2018 592 1063 1078 10.1002/1873-3468.12999 29427507 PMC5903970 · DOI
  45. [51]Qin Q Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data Genome Biol. 2020 21 32 10.1186/s13059-020-1934-6 32033573 PMC7007693 · DOI
  46. [52]Ma A IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq Nucleic Acids Res. 2020 48 W275 W286 10.1093/nar/gkaa394 32421805 PMC7319566 · DOI
  47. [53]Chamling X Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells Nat. Commun. 2021 12 652 10.1038/s41467-021-20892-3 33510160 PMC7844020 · DOI
  48. [54]Bentsen M ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation Nat. Commun. 2020 11 4267 10.1038/s41467-020-18035-1 32848148 PMC7449963 · DOI
  49. [55]Zhou W Ji Z Fang W Ji H Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq Nucleic Acids Res. 2019 47 e121 10.1093/nar/gkz716 31428792 PMC6821224 · DOI
  50. [56]Cao J The single-cell transcriptional landscape of mammalian organogenesis Nature 2019 566 496 502 10.1038/s41586-019-0969-x 30787437 PMC6434952 · DOI · Paper page
  51. [57]Jakel S Altered human oligodendrocyte heterogeneity in multiple sclerosis Nature 2019 566 543 547 10.1038/s41586-019-0903-2 30747918 PMC6544546 · DOI · Paper page
  52. [58]Selvaraju R Osteopontin is upregulated during in vivo demyelination and remyelination and enhances myelin formation in vitro Mol. Cell Neurosci. 2004 25 707 721 10.1016/j.mcn.2003.12.014 15080898 · DOI · Paper page
  53. [59]Cammer W Zhang H Carbonic anhydrase in distinct precursors of astrocytes and oligodendrocytes in the forebrains of neonatal and young rats Brain Res. Dev. Brain Res. 1992 67 257 263 10.1016/0165-3806(92)90226-M 1511519 · DOI
  54. [60]Ishii A Fyffe-Maricich SL Furusho M Miller RH Bansal R ERK1/ERK2 MAPK signaling is required to increase myelin thickness independent of oligodendrocyte differentiation and initiation of myelination J. Neurosci. 2012 32 8855 10.1523/JNEUROSCI.0137-12.2012 22745486 PMC3521511 · DOI
  55. [61]Yildirim F Early epigenomic and transcriptional changes reveal Elk-1 transcription factor as a therapeutic target in Huntington’s disease Proc. Natl Acad. Sci. USA 2019 116 24840 24851 10.1073/pnas.1908113116 31744868 PMC6900520 · DOI
  56. [62]Szu J Wojcinski A Jiang P Kesari S Impact of the Olig family on neurodevelopmental disorders Front. Neurosci. 2021 15 659601 659601 10.3389/fnins.2021.659601 33859549 PMC8042229 · DOI
  57. [63]Garcia FJ Single-cell dissection of the human brain vasculature Nature 2022 603 893 899 10.1038/s41586-022-04521-7 35158371 PMC9680899 · DOI
  58. [64]Kumar SS Buckmaster PS Neuron-specific nuclear antigen NeuN is not detectable in gerbil subtantia nigra pars reticulata Brain Res. 2007 1142 54 60 10.1016/j.brainres.2007.01.027 17291468 PMC2691720 · DOI
  59. [66]Asotra K Macklin WB Protein kinase C activity modulates myelin gene expression in enriched oligodendrocytes J. Neurosci. Res. 1993 34 571 588 10.1002/jnr.490340509 7683060 · DOI
  60. [68]Baron W de Jonge JC de Vries H Hoekstra D Regulation of oligodendrocyte differentiation: protein kinase C activation prevents differentiation of O2A progenitor cells toward oligodendrocytes Glia 1998 22 121 129 10.1002/(SICI)1098-1136(199802)22:2<121::AID-GLIA3>3.0.CO;2-A 9537832 · DOI
  61. [69]Damato, M. et al. Protein kinase C activation drives a differentiation program in an oligodendroglial precursor model through the modulation of specific biological networks. Int. J. Mol. Sci.10.3390/ijms22105245 (2021). PMC8156399 34063504 · DOI
  62. [70]Amaral AI Tavares JM Sonnewald U Kotter MR Oligodendrocytes: development, physiology, and glucose Metab. Adv. Neurobiol. 2016 13 275 294 10.1007/978-3-319-45096-4_10 27885633 · DOI
  63. [71]da Rosa PM High-glucose medium induces cellular differentiation and changes in metabolic functionality of oligodendroglia Mol. Biol. Rep. 2019 46 4817 4826 10.1007/s11033-019-04930-4 31270757 · DOI
  64. [72]Rinholm JE Regulation of oligodendrocyte development and myelination by glucose and lactate J. Neurosci. 2011 31 538 548 10.1523/JNEUROSCI.3516-10.2011 21228163 PMC3044866 · DOI · Paper page
  65. [73]Yan H Rivkees SA Hypoglycemia influences oligodendrocyte development and myelin formation Neuroreport 2006 17 55 59 10.1097/01.wnr.0000192733.00535.b6 16361950 · DOI
  66. [74]DeBrosse SD Spectrum of neurological and survival outcomes in pyruvate dehydrogenase complex (PDC) deficiency: lack of correlation with genotype Mol. Genet Metab. 2012 107 394 402 10.1016/j.ymgme.2012.09.001 23021068 · DOI
  67. [76]Zhang S Lachance BB Mattson MP Jia X Glucose metabolic crosstalk and regulation in brain function and diseases Prog. Neurobiol. 2021 204 102089 10.1016/j.pneurobio.2021.102089 34118354 PMC8380002 · DOI
  68. [77]Marce-Grau A Marti-Sanchez L Baide-Mairena H Ortigoza-Escobar JD Perez-Duenas B Genetic defects of thiamine transport and metabolism: a review of clinical phenotypes, genetics, and functional studies J. Inherit. Metab. Dis. 2019 42 581 597 10.1002/jimd.12125 31095747 · DOI
  69. [78]Pico S CPEB alteration and aberrant transcriptome-polyadenylation lead to a treatable SLC19A3 deficiency in Huntington’s disease Sci. Transl. Med. 2021 13 eabe7104 10.1126/scitranslmed.abe7104 34586830 · DOI
  70. [79]Stuart T Comprehensive integration of single-cell data Cell 2019 177 1888 1902 e1821 10.1016/j.cell.2019.05.031 31178118 PMC6687398 · DOI · Paper page
  71. [80]Petukhov V dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments Genome Biol. 2018 19 78 10.1186/s13059-018-1449-6 29921301 PMC6010209 · DOI
  72. [85]Welch JD Single-cell multi-omic integration compares and contrasts features of brain cell identity Cell 2019 177 1873 1887 e1817 10.1016/j.cell.2019.05.006 31178122 PMC6716797 · DOI · Paper page
  73. [86]Raudvere U g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) Nucleic Acids Res. 2019 47 W191 W198 10.1093/nar/gkz369 31066453 PMC6602461 · DOI · Paper page
  74. [87]Lun AT McCarthy DJ Marioni JC A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor F1000Res 2016 5 2122 27909575 PMC5112579
  75. [88]Al-Dalahmah O Single-nucleus RNA-seq identifies Huntington disease astrocyte states Acta Neuropathol. Commun. 2020 8 19 10.1186/s40478-020-0880-6 32070434 PMC7029580 · DOI · Paper page
  76. [90]Corces MR An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues Nat. Methods 2017 14 959 962 10.1038/nmeth.4396 28846090 PMC5623106 · DOI · Paper page
  77. [91]Smith-Geater C Aberrant development corrected in adult-onset Huntington’s disease iPSC-derived neuronal cultures via WNT signaling modulation Stem Cell Rep. 2020 14 406 419 10.1016/j.stemcr.2020.01.015 PMC7066322 32109367 · DOI
  78. [92]Scutari M Learning Bayesian Networks with the bnlearn R Package J. Stat. Softw. 2010 35 1 22 10.18637/jss.v035.i03 · DOI
  79. [93]Sachs K Perez O Pe’er D Lauffenburger DA Nolan GP Causal protein-signaling networks derived from multiparameter single-cell data Science 2005 308 523 529 10.1126/science.1105809 15845847 · DOI
  80. [94]Emery B Dugas JC Purification of oligodendrocyte lineage cells from mouse cortices by immunopanning Cold Spring Harb. Protoc. 2013 2013 854 868 10.1101/pdb.prot073973 24003195 · DOI
  81. [96]Chan RB Comparative lipidomic analysis of mouse and human brain with Alzheimer disease J. Biol. Chem. 2012 287 2678 2688 10.1074/jbc.M111.274142 22134919 PMC3268426 · DOI · Paper page
  82. [97]Hsu FF Turk J Shi Y Groisman EA Characterization of acylphosphatidylglycerols from Salmonella typhimurium by tandem mass spectrometry with electrospray ionization J. Am. Soc. Mass Spectrom. 2004 15 1 11 10.1016/j.jasms.2003.08.006 14698549 · DOI
  83. [99]Dansu DK PRMT5 interacting partners and substrates in oligodendrocyte lineage cells Front. Cell Neurosci. 2022 16 820226 10.3389/fncel.2022.820226 35370564 PMC8968030 · DOI
  84. [100]Bankhead P QuPath: open source software for digital pathology image analysis Sci. Rep. 2017 7 16878 10.1038/s41598-017-17204-5 29203879 PMC5715110 · DOI · Paper page

Cited by

Sorted by citations

Authors
Lim, R. G., Al-Dalahmah, O., Wu, J., Gold, M. P., Reidling, J. C., Tang, G., Adam, M., Dansu, D. K., Park, H.-J., Casaccia, P., Miramontes, R., Reyes-Ortiz, A. M., Lau, A., Hickman, R. A., Khan, F., Paryani, F., Tang, A., Ofori, K., Miyoshi, E., Michael, N., McClure, N., Flowers, X. E., Vonsattel, J. P., Davidson, S., Menon, V., Swarup, V., Fraenkel, E., Goldman, J. E., & Thompson, L. M.
Affiliations
  • University of California, Irvine (US)
  • Massachusetts Institute of Technology (US)
  • Columbia University Irving Medical Center (US)
  • City University of New York (US)
  • Princeton University (US)
Corresponding author
  • Goldman, James E.
  • Thompson, Leslie M.
Venue
Nature Communications
Published
2022-12-21
Volume
13
Issue
1
Pages
7791-7791
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4313340421
Cited by
84
References
15
Citations by year
2026: 28 · 2025: 27 · 2024: 17 · 2023: 11 · 2022: 1
FWCI
6.19
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc)
  • eScholarship (California Digital Library) (submittedVersion, cc-by)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (R01 NS089076, R35 NS116872)
Topics
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
Keywords
Huntington's disease, oligodendrocyte maturation, oligodendrocyte precursor cells, protein kinase C epsilon, Olig1, Olig2, CAG repeat length, thiamine metabolism, glucose metabolism, lipid metabolism, chromatin accessibility, R6/2 mice, cortical pathology, neuronal pathology
MeSH terms
Animals, Biotin, Disease Models, Animal, Humans, Huntington Disease, Mice, Transgenic, Nerve Tissue Proteins, Oligodendroglia, Thiamine, Solitary Nucleus, Dietary Supplements, Mice

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review